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Volumn 76, Issue 24, 2002, Pages 12654-12662

RNA recombination in Brome mosaic virus: Effects of strand-specific stem-loop inserts

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

EID: 0036893345     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.76.24.12654-12662.2002     Document Type: Article
Times cited : (22)

References (50)
  • 1
    • 0028910588 scopus 로고
    • Secondary structure model for the last two domains of single-stranded RNA phage Q beta
    • Beekwilder, M. J., R. Nieuwenhuizen, and J. van Duin. 1995. Secondary structure model for the last two domains of single-stranded RNA phage Q beta. J. Mol. Biol. 247:903-917.
    • (1995) J. Mol. Biol. , vol.247 , pp. 903-917
    • Beekwilder, M.J.1    Nieuwenhuizen, R.2    Van Duin, J.3
  • 2
    • 0033999634 scopus 로고    scopus 로고
    • Frequent homologous recombination events between molecules of one RNA component in a multipartite RNA virus
    • Bruyere, A., M. Wantroba, S. Flasinski, A. Dzianott, and J. J. Bujarski. 2000. Frequent homologous recombination events between molecules of one RNA component in a multipartite RNA virus. J. Virol. 74:4214-4219.
    • (2000) J. Virol. , vol.74 , pp. 4214-4219
    • Bruyere, A.1    Wantroba, M.2    Flasinski, S.3    Dzianott, A.4    Bujarski, J.J.5
  • 3
    • 0030332528 scopus 로고    scopus 로고
    • Comparison of the replication of positive-stranded RNA viruses of plants and animals
    • Buck, K. W. 1996. Comparison of the replication of positive-stranded RNA viruses of plants and animals. Adv. Virus Res. 47:159-251.
    • (1996) Adv. Virus Res. , vol.47 , pp. 159-251
    • Buck, K.W.1
  • 4
    • 0031610452 scopus 로고    scopus 로고
    • Bromovirus isolation and RNA extraction
    • Bujarski, J. J. 1998. Bromovirus isolation and RNA extraction. Methods Mol. Biol. 81:183-188.
    • (1998) Methods Mol. Biol. , vol.81 , pp. 183-188
    • Bujarski, J.J.1
  • 5
    • 0030432592 scopus 로고    scopus 로고
    • Experimental systems of genetic recombination and defective RNA formation in RNA viruses. Part I
    • Bujarski, J. J. 1996. Experimental systems of genetic recombination and defective RNA formation in RNA viruses. Part I. Semin. Virol. 7:361-362.
    • (1996) Semin. Virol. , vol.7 , pp. 361-362
    • Bujarski, J.J.1
  • 6
    • 0031455317 scopus 로고    scopus 로고
    • Experimental systems of genetic recombination and defective RNA formation in RNA viruses. Part II
    • Bujarski, J. J. 1997. Experimental systems of genetic recombination and defective RNA formation in RNA viruses. Part II. Semin. Virol. 8:75-76.
    • (1997) Semin. Virol. , vol.8 , pp. 75-76
    • Bujarski, J.J.1
  • 7
    • 0028035957 scopus 로고
    • Molecular studies of genetic RNA-RNA recombination in brome mosaic virus
    • Bujarski, J. J., P. Nagy, and S. Flasinski. 1994. Molecular studies of genetic RNA-RNA recombination in brome mosaic virus. Adv. Virus Res. 43:275-302.
    • (1994) Adv. Virus Res. , vol.43 , pp. 275-302
    • Bujarski, J.J.1    Nagy, P.2    Flasinski, S.3
  • 8
    • 0022524928 scopus 로고
    • Genetic recombination between RNA components of a multipartite plant virus
    • Bujarski, J. J., and P. Kaesberg. 1986. Genetic recombination between RNA components of a multipartite plant virus. Nature 321:528-531.
    • (1986) Nature , vol.321 , pp. 528-531
    • Bujarski, J.J.1    Kaesberg, P.2
  • 9
    • 0025302678 scopus 로고
    • Recombination between satellite RNAs of turnip crinkle virus
    • Cascone, P. J., C. D. Carpenter, X. H. Li, and A. E. Simon. 1990. Recombination between satellite RNAs of turnip crinkle virus. EMBO J. 9:1709-1715.
    • (1990) EMBO J. , vol.9 , pp. 1709-1715
    • Cascone, P.J.1    Carpenter, C.D.2    Li, X.H.3    Simon, A.E.4
  • 10
    • 0030975364 scopus 로고    scopus 로고
    • Nonhomologous RNA recombination in a cell-free system: Evidence for a transesterification mechanism guided by secondary structure
    • Chetverin, A. B., H. V. Chetverina, A. A. Demidenko, and V. I. Ugarov. 1997. Nonhomologous RNA recombination in a cell-free system: Evidence for a transesterification mechanism guided by secondary structure. Cell 88:503-513.
    • (1997) Cell , vol.88 , pp. 503-513
    • Chetverin, A.B.1    Chetverina, H.V.2    Demidenko, A.A.3    Ugarov, V.I.4
  • 11
    • 0032538282 scopus 로고    scopus 로고
    • Sequence-dependent extrusion of a small DNA hairpin at the N4 virion RNA polymerase promoters
    • Dai, X., M. Kloster, and L. B. Rothman-Denes. 1998. Sequence-dependent extrusion of a small DNA hairpin at the N4 virion RNA polymerase promoters. J. Mol. Biol. 283:43-58.
    • (1998) J. Mol. Biol. , vol.283 , pp. 43-58
    • Dai, X.1    Kloster, M.2    Rothman-Denes, L.B.3
  • 12
    • 0031455537 scopus 로고    scopus 로고
    • Elongation properties of vaccinia virus RNA polymerase: Pausing, slippage, 3′ end addition, and termination site choice
    • Deng, L., and S. Shuman. 1997. Elongation properties of vaccinia virus RNA polymerase: Pausing, slippage, 3′ end addition, and termination site choice. Biochemistry 36:15892-15899.
    • (1997) Biochemistry , vol.36 , pp. 15892-15899
    • Deng, L.1    Shuman, S.2
  • 13
    • 0028950942 scopus 로고
    • Foreign complementary sequences facilitate genetic recombination in brome mosaic virus
    • Dzianott, A., S. Flasinski, S. Pratt, and J. J. Bujarski. 1995. Foreign complementary sequences facilitate genetic recombination in brome mosaic virus. Virology 208:370-375.
    • (1995) Virology , vol.208 , pp. 370-375
    • Dzianott, A.1    Flasinski, S.2    Pratt, S.3    Bujarski, J.J.4
  • 14
    • 0035840796 scopus 로고    scopus 로고
    • Studies on functional interaction between brome mosaic virus replicase proteins during RNA recombination, using combined mutants in vivo and in vitro
    • Dzianott, A., N. Rauffer-Bruyere, and J. J. Bujarski. 2001. Studies on functional interaction between brome mosaic virus replicase proteins during RNA recombination, using combined mutants in vivo and in vitro. Virology 289:137-149.
    • (2001) Virology , vol.289 , pp. 137-149
    • Dzianott, A.1    Rauffer-Bruyere, N.2    Bujarski, J.J.3
  • 15
    • 0031048602 scopus 로고    scopus 로고
    • A mutation in the putative RNA polymerase gene inhibits nonhomologous, but not homologous, genetic recombination in an RNA virus
    • Figlerowicz, M., P. D. Nagy, and J. J. Bujarski. 1997. A mutation in the putative RNA polymerase gene inhibits nonhomologous, but not homologous, genetic recombination in an RNA virus. Proc. Natl. Acad. Sci. USA 94:2073-2078.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 2073-2078
    • Figlerowicz, M.1    Nagy, P.D.2    Bujarski, J.J.3
  • 16
    • 0031658935 scopus 로고    scopus 로고
    • Mutations in the N terminus of the brome mosaic virus polymerase affect genetic RNA-RNA recombination
    • Figlerowicz, M., P. D. Nagy, N. Tang, C. C. Kao, and J. J. Bujarski. 1998. Mutations in the N terminus of the brome mosaic virus polymerase affect genetic RNA-RNA recombination. J. Virol. 72:9192-9200.
    • (1998) J. Virol. , vol.72 , pp. 9192-9200
    • Figlerowicz, M.1    Nagy, P.D.2    Tang, N.3    Kao, C.C.4    Bujarski, J.J.5
  • 17
    • 0032249157 scopus 로고    scopus 로고
    • RNA recombination in brome mosaic virus, a model plus strand RNA virus
    • Figlerowicz, M., and J. J. Bujarski. 1998. RNA recombination in brome mosaic virus, a model plus strand RNA virus. Acta Biochim. Pol. 45:847-868.
    • (1998) Acta Biochim. Pol. , vol.45 , pp. 847-868
    • Figlerowicz, M.1    Bujarski, J.J.2
  • 18
    • 0343729917 scopus 로고    scopus 로고
    • RNA motifs mediating in vivo site-specific nonhomologous recombination in positive RNA virus enforce in vitro nonhomologous crossovers with HIV-1 reverse transcriptase
    • Figlerowicz, M., and A. Bibillo. 2000. RNA motifs mediating in vivo site-specific nonhomologous recombination in positive RNA virus enforce in vitro nonhomologous crossovers with HIV-1 reverse transcriptase. RNA 6:339-351.
    • (2000) RNA , vol.6 , pp. 339-351
    • Figlerowicz, M.1    Bibillo, A.2
  • 19
    • 0026423027 scopus 로고
    • Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops
    • Heus, H. A., and A. Pardi. 1991. Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops. Science 253:191-194.
    • (1991) Science , vol.253 , pp. 191-194
    • Heus, H.A.1    Pardi, A.2
  • 20
    • 0034718567 scopus 로고    scopus 로고
    • Misincorporation by wild type and mutant T7 RNA polymerases: Identification of interactions that reduce misincorporation rates by stabilizing the catalytically incompetent open conformation
    • Huang, J., L. G. Brieba, and R. Sousa. 2000. Misincorporation by wild type and mutant T7 RNA polymerases: Identification of interactions that reduce misincorporation rates by stabilizing the catalytically incompetent open conformation. Biochemistry 39:11571-11580.
    • (2000) Biochemistry , vol.39 , pp. 11571-11580
    • Huang, J.1    Brieba, L.G.2    Sousa, R.3
  • 21
    • 0039792280 scopus 로고    scopus 로고
    • Getting a grip: Polymerases and their substrate complexes
    • Jager, J., and J. D. Pata. 1999. Getting a grip: Polymerases and their substrate complexes. Curr. Opin. Struct. Biol. 9:21-28.
    • (1999) Curr. Opin. Struct. Biol. , vol.9 , pp. 21-28
    • Jager, J.1    Pata, J.D.2
  • 22
    • 0023273613 scopus 로고
    • High efficiency T7 polymerase synthesis of infectious RNA from cloned brome mosaic virus cDNA and effects of 5′ extensions of transcript infectivity
    • Janda, M., R. French, and P. Ahlquist. 1987. High efficiency T7 polymerase synthesis of infectious RNA from cloned brome mosaic virus cDNA and effects of 5′ extensions of transcript infectivity. Virology 158:259-262.
    • (1987) Virology , vol.158 , pp. 259-262
    • Janda, M.1    French, R.2    Ahlquist, P.3
  • 23
    • 0025801332 scopus 로고
    • The polymerase in its labyrinth: Mechanisms and implications of RNA recombination
    • Jarvis, T. C., and K. Kirkegaard. 1991. The polymerase in its labyrinth: Mechanisms and implications of RNA recombination. Trends Genet. 7:186-191.
    • (1991) Trends Genet. , vol.7 , pp. 186-191
    • Jarvis, T.C.1    Kirkegaard, K.2
  • 24
    • 0023017765 scopus 로고
    • The mechanism of RNA recombination in poliovirus
    • Kirkegaard, K., and D. Baltimore. 1986. The mechanism of RNA recombination in poliovirus. Cell 47:433-443.
    • (1986) Cell , vol.47 , pp. 433-443
    • Kirkegaard, K.1    Baltimore, D.2
  • 25
    • 0030719864 scopus 로고    scopus 로고
    • Rescue of the RNA phage genome from RNase III cleavage
    • Klovins, J., J. van Duin, and R. C. L. Olsthoorn. 1997. Rescue of the RNA phage genome from RNase III cleavage. Nucleic Acids Res. 25:4201-4208.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4201-4208
    • Klovins, J.1    Van Duin, J.2    Olsthoorn, R.C.L.3
  • 27
    • 0027294694 scopus 로고
    • Contributions of the brome mosaic virus RNA-3 3′-nontranslated region to replication and translation
    • Lahser, F. C., L. E. Marsh, and T. C. Hall. 1993. Contributions of the brome mosaic virus RNA-3 3′-nontranslated region to replication and translation. J. Virol. 67:3295-3303.
    • (1993) J. Virol. , vol.67 , pp. 3295-3303
    • Lahser, F.C.1    Marsh, L.E.2    Hall, T.C.3
  • 28
    • 0026602984 scopus 로고
    • RNA recombination in animal and plant viruses
    • Lai, M. M. C. 1992. RNA recombination in animal and plant viruses. Microbiol. Rev. 56:1-79.
    • (1992) Microbiol. Rev. , vol.56 , pp. 1-79
    • Lai, M.M.C.1
  • 29
    • 0027324884 scopus 로고
    • Nonhomologous RNA recombination during negative-strand synthesis of flock house virus RNA
    • Li, Y., and L. A. Ball. 1993. Nonhomologous RNA recombination during negative-strand synthesis of flock house virus RNA. J. Virol. 67:3854-3860.
    • (1993) J. Virol. , vol.67 , pp. 3854-3860
    • Li, Y.1    Ball, L.A.2
  • 30
    • 0023801497 scopus 로고
    • Primary structure and translation of a defective interfering RNA of murine coronavirus
    • Makino, S., C.-K. Shieh, L. H. Soe, S. C. Baker, and M. M. C. Lai. 1988. Primary structure and translation of a defective interfering RNA of murine coronavirus. Virology 166:550-560.
    • (1988) Virology , vol.166 , pp. 550-560
    • Makino, S.1    Shieh, C.-K.2    Soe, L.H.3    Baker, S.C.4    Lai, M.M.C.5
  • 31
    • 0027313424 scopus 로고
    • Targeting the site of RNA-RNA recombination in brome mosaic virus with antisense sequences
    • Nagy, P. D., and J. J. Bujarski. 1993. Targeting the site of RNA-RNA recombination in brome mosaic virus with antisense sequences. Proc. Natl. Acad. Sci. USA 90:6390-6394.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 6390-6394
    • Nagy, P.D.1    Bujarski, J.J.2
  • 32
    • 0028936186 scopus 로고
    • Efficient system of homologous RNA recombination in brome mosaic virus: Sequence and structure requirements and accuracy of crossovers
    • Nagy, P. D., and J. J. Bujarski. 1995. Efficient system of homologous RNA recombination in brome mosaic virus: Sequence and structure requirements and accuracy of crossovers. J. Virol. 69:131-140.
    • (1995) J. Virol. , vol.69 , pp. 131-140
    • Nagy, P.D.1    Bujarski, J.J.2
  • 33
    • 0030900659 scopus 로고    scopus 로고
    • Engineering of homologous recombination hotspots with AU-rich sequences in brome mosaic virus
    • Nagy, P. D., and J. J. Bujarski. 1997. Engineering of homologous recombination hotspots with AU-rich sequences in brome mosaic virus. J. Virol. 71:3799-3810.
    • (1997) J. Virol. , vol.71 , pp. 3799-3810
    • Nagy, P.D.1    Bujarski, J.J.2
  • 34
    • 0031883260 scopus 로고    scopus 로고
    • Silencing homologous RNA recombination hot spots with GC-rich sequences in brome mosaic virus
    • Nagy, P. D., and J. J. Bujarski. 1998. Silencing homologous RNA recombination hot spots with GC-rich sequences in brome mosaic virus. J. Virol. 72:1122-1130.
    • (1998) J. Virol. , vol.72 , pp. 1122-1130
    • Nagy, P.D.1    Bujarski, J.J.2
  • 35
    • 0028940477 scopus 로고
    • Effect of mutations in the helicase-like domain of la protein on RNA-RNA recombination in brome mosaic virus
    • Nagy, P. D., A. Dzianott, P. Ahlquist, and J. J. Bujarski. 1994. Effect of mutations in the helicase-like domain of la protein on RNA-RNA recombination in brome mosaic virus. J. Virol. 69:2547-2556.
    • (1994) J. Virol. , vol.69 , pp. 2547-2556
    • Nagy, P.D.1    Dzianott, A.2    Ahlquist, P.3    Bujarski, J.J.4
  • 36
    • 0030759896 scopus 로고    scopus 로고
    • New insights into the mechanisms of RNA recombination
    • Nagy, P. D., and A. E. Simon. 1997. New insights into the mechanisms of RNA recombination. Virology 235:1-9.
    • (1997) Virology , vol.235 , pp. 1-9
    • Nagy, P.D.1    Simon, A.E.2
  • 37
    • 0033079816 scopus 로고    scopus 로고
    • Mapping sequences active in homologous RNA recombination in brome mosaic virus: Prediction of recombination hot spots
    • Nagy, P. D., C. Ogiela, and J. J. Bujarski. 1999. Mapping sequences active in homologous RNA recombination in brome mosaic virus: Prediction of recombination hot spots. Virology 254:92-104.
    • (1999) Virology , vol.254 , pp. 92-104
    • Nagy, P.D.1    Ogiela, C.2    Bujarski, J.J.3
  • 38
    • 0032522539 scopus 로고    scopus 로고
    • Dissecting RNA recombination in vitro: Role of RNA sequences and the viral replicase
    • Nagy, P. D., C. Zhang, and A. E. Simon. 1998. Dissecting RNA recombination in vitro: Role of RNA sequences and the viral replicase. EMBO J. 17:2392-2403.
    • (1998) EMBO J. , vol.17 , pp. 2392-2403
    • Nagy, P.D.1    Zhang, C.2    Simon, A.E.3
  • 39
    • 0026486193 scopus 로고
    • Mechanism of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase
    • Peliska, J. A., and S. J. Benkovic. 1992. Mechanism of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase. Science 258:1112-1118.
    • (1992) Science , vol.258 , pp. 1112-1118
    • Peliska, J.A.1    Benkovic, S.J.2
  • 40
    • 0025334745 scopus 로고
    • Use of Chenopodium hybridum facilitates isolation of brome mosaic virus RNA recombinants
    • Rao, A. L., B. P. Sullivan, and T. C. Hall. 1990. Use of Chenopodium hybridum facilitates isolation of brome mosaic virus RNA recombinants. J. Gen. Virol. 71:1403-1407.
    • (1990) J. Gen. Virol. , vol.71 , pp. 1403-1407
    • Rao, A.L.1    Sullivan, B.P.2    Hall, T.C.3
  • 41
    • 0027312436 scopus 로고
    • Characterizations of defective interfering RNA components that increase symptom severity of broad bean mottle virus infections
    • Romero, J., Q. Huang, J. Pogany, and J. J. Bujarski. 1993. Characterizations of defective interfering RNA components that increase symptom severity of broad bean mottle virus infections. Virology 194:576-584.
    • (1993) Virology , vol.194 , pp. 576-584
    • Romero, J.1    Huang, Q.2    Pogany, J.3    Bujarski, J.J.4
  • 42
    • 0032562751 scopus 로고    scopus 로고
    • Template strand switching by T7 RNA polymerase
    • Rong, M., R. K. Durbin, and W. T. McAllister. 1998. Template strand switching by T7 RNA polymerase. J. Biol. Chem. 273:10253-10260.
    • (1998) J. Biol. Chem. , vol.273 , pp. 10253-10260
    • Rong, M.1    Durbin, R.K.2    McAllister, W.T.3
  • 43
    • 0030614142 scopus 로고    scopus 로고
    • Mechanisms of plant-virus evolution
    • Roossinck, M. 1997. Mechanisms of plant-virus evolution. Annu. Rev. Phytopathol. 35:191-209.
    • (1997) Annu. Rev. Phytopathol. , vol.35 , pp. 191-209
    • Roossinck, M.1
  • 44
    • 0023634933 scopus 로고
    • Studies on the recombination between RNA genomes of poliovirus: The primary structure and nonrandom distribution of crossover regions in the genomes of intertypic poliovirus recombinants
    • Tolskaya, E. A., L. I. Romanova, V. M. Blinov, E. G. Viktorova, A. N. Sinyakov, M. S. Kolesnikova, and V. L. Agol. 1987. Studies on the recombination between RNA genomes of poliovirus: The primary structure and nonrandom distribution of crossover regions in the genomes of intertypic poliovirus recombinants. Virology 161:54-61.
    • (1987) Virology , vol.161 , pp. 54-61
    • Tolskaya, E.A.1    Romanova, L.I.2    Blinov, V.M.3    Viktorova, E.G.4    Sinyakov, A.N.5    Kolesnikova, M.S.6    Agol, V.L.7
  • 45
    • 0025804214 scopus 로고
    • Ribonuclease T1 generates circular RNA molecules from viroid-specific RNA transcripts by cleavage and intramolecular ligation
    • Tsagris, M., M. Tabler, and H. L. Sanger. 1991. Ribonuclease T1 generates circular RNA molecules from viroid-specific RNA transcripts by cleavage and intramolecular ligation. Nucleic Acids Res. 19:1605-1612.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1605-1612
    • Tsagris, M.1    Tabler, M.2    Sanger, H.L.3
  • 46
    • 0031459888 scopus 로고    scopus 로고
    • Escherichia coli RNA polymerase terminates transcription efficiently at rho-independent terminators on single-stranded DNA templates
    • Uptain, S. M., and M. J. Chamberlain. 1997. Escherichia coli RNA polymerase terminates transcription efficiently at rho-independent terminators on single-stranded DNA templates. Proc. Natl. Acad. Sci. USA 94:13548-13553.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 13548-13553
    • Uptain, S.M.1    Chamberlain, M.J.2
  • 48
    • 0032584643 scopus 로고    scopus 로고
    • An integrated model of the transcription complex in elongation, termination, and editing
    • von Hippel, P. H. 1998. An integrated model of the transcription complex in elongation, termination, and editing. Science 281:660-665.
    • (1998) Science , vol.281 , pp. 660-665
    • Von Hippel, P.H.1
  • 49
    • 0029447820 scopus 로고
    • RNA determinants of junction site selection in RNA virus recombinants and defective interfering RNAs
    • White, K. A., and T. J. Morris. 1995. RNA determinants of junction site selection in RNA virus recombinants and defective interfering RNAs. RNA 1:1029-1040.
    • (1995) RNA , vol.1 , pp. 1029-1040
    • White, K.A.1    Morris, T.J.2
  • 50
    • 0029073396 scopus 로고
    • Transcription termination at intrinsic terminators: The role of the RNA hairpin
    • Wilson, K. S., and P. H. von Hippel. 1995. Transcription termination at intrinsic terminators: The role of the RNA hairpin. Proc. Natl. Acad. Sci. USA 92:8793-8797.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 8793-8797
    • Wilson, K.S.1    Von Hippel, P.H.2


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