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Volumn 8, Issue 9, 2013, Pages

Hydrophobic Fluorescent Probes Introduce Artifacts into Single Molecule Tracking Experiments Due to Non-Specific Binding

Author keywords

[No Author keywords available]

Indexed keywords

EPIDERMAL GROWTH FACTOR RECEPTOR; FLUORESCENT DYE; GREEN FLUORESCENT PROTEIN;

EID: 84884182966     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0074200     Document Type: Article
Times cited : (146)

References (38)
  • 2
    • 23744499004 scopus 로고    scopus 로고
    • Fluorescence imaging with one nanometer accuracy: application to molecular motors
    • Yildiz A, Selvin PR, (2005) Fluorescence imaging with one nanometer accuracy: application to molecular motors. Accounts of chemical research 38: 574-582.
    • (2005) Accounts of Chemical Research , vol.38 , pp. 574-582
    • Yildiz, A.1    Selvin, P.R.2
  • 3
    • 44449134820 scopus 로고    scopus 로고
    • A practical guide to single-molecule FRET
    • Roy R, Hohng S, Ha T, (2008) A practical guide to single-molecule FRET. Nature methods 5: 507-516.
    • (2008) Nature Methods , vol.5 , pp. 507-516
    • Roy, R.1    Hohng, S.2    Ha, T.3
  • 4
    • 84877066745 scopus 로고    scopus 로고
    • Measuring EGFR separations on cells with ∼10 nm resolution via fluorophore localization imaging with photobleaching
    • Needham SR, Hirsch M, Rolfe DJ, Clarke DT, Zanetti-Domingues LC, et al. (2013) Measuring EGFR separations on cells with ∼10 nm resolution via fluorophore localization imaging with photobleaching. PloS one 8: e62331.
    • (2013) PloS One , vol.8
    • Needham, S.R.1    Hirsch, M.2    Rolfe, D.J.3    Clarke, D.T.4    Zanetti-Domingues, L.C.5
  • 5
    • 78650055727 scopus 로고    scopus 로고
    • Photoactivated localization microscopy (PALM): an optical technique for achieving ∼10-nm resolution
    • Zhong H, (2010) Photoactivated localization microscopy (PALM): an optical technique for achieving ∼10-nm resolution. Cold Spring Harbor protocols 2010: pdb.top91.
    • (2010) Cold Spring Harbor Protocols , vol.2010
    • Zhong, H.1
  • 6
    • 33749026335 scopus 로고    scopus 로고
    • Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • Rust MJ, Bates M, Zhuang X, (2006) Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nature methods 3: 793-795.
    • (2006) Nature Methods , vol.3 , pp. 793-795
    • Rust, M.J.1    Bates, M.2    Zhuang, X.3
  • 7
    • 0027504198 scopus 로고
    • Confined lateral diffusion of membrane receptors as studied by single particle tracking (nanovid microscopy). Effects of calcium-induced differentiation in cultured epithelial cells
    • Kusumi A, Sako Y, Yamamoto M, (1993) Confined lateral diffusion of membrane receptors as studied by single particle tracking (nanovid microscopy). Effects of calcium-induced differentiation in cultured epithelial cells. Biophysical journal 65: 2021-2040.
    • (1993) Biophysical Journal , vol.65 , pp. 2021-2040
    • Kusumi, A.1    Sako, Y.2    Yamamoto, M.3
  • 8
    • 84866647031 scopus 로고    scopus 로고
    • A systematic investigation of differential effects of cell culture substrates on the extent of artifacts in single-molecule tracking
    • Zanetti-Domingues LC, Martin-Fernandez ML, Needham SR, Rolfe DJ, Clarke DT, (2012) A systematic investigation of differential effects of cell culture substrates on the extent of artifacts in single-molecule tracking. PloS one 7: e45655.
    • (2012) PloS One , vol.7
    • Zanetti-Domingues, L.C.1    Martin-Fernandez, M.L.2    Needham, S.R.3    Rolfe, D.J.4    Clarke, D.T.5
  • 10
    • 34347380371 scopus 로고    scopus 로고
    • Phage display selection of Affibody molecules with specific binding to the extracellular domain of the epidermal growth factor receptor
    • Friedman M, Nordberg E, Hoiden-Guthenberg I, Brismar H, Adams GP, et al. (2007) Phage display selection of Affibody molecules with specific binding to the extracellular domain of the epidermal growth factor receptor. Protein engineering, design & selection 20: 189-199.
    • (2007) Protein Engineering, Design & Selection , vol.20 , pp. 189-199
    • Friedman, M.1    Nordberg, E.2    Hoiden-Guthenberg, I.3    Brismar, H.4    Adams, G.P.5
  • 13
    • 84884200080 scopus 로고    scopus 로고
    • ATTO-TEC GmbH, Available:. Accessed 2013 Jul 2
    • ATTO-TEC GmbH (2011) Product Information: ATTO 647N. Available: http://www.atto-tec.com/fileadmin/user_upload/Katalog_Flyer_Support/ATTO_647N.pdf. Accessed 2013 Jul 2.
    • (2011) Product Information: ATTO 647N
  • 15
    • 84884173049 scopus 로고    scopus 로고
    • VWR International, Available:. Accessed 2013 Jul 2
    • VWR International. CF Dye Q&A. 3-5. Available: https://media.vwr.com/stibo/hi_res/8562525.pdf. Accessed 2013 Jul 2.
    • CF Dye Q&A , pp. 3-5
  • 16
    • 84884181700 scopus 로고    scopus 로고
    • Biotium Inc, Available:. Accessed 2013 Jul 2
    • Biotium Inc. CF Dyes Selection Guide. Available: http://www.biotium.com/product/product_info/flyer/CF%20dye%20selection%20guide.pdf. Accessed 2013 Jul 2.
    • CF Dyes Selection Guide
  • 17
    • 0041876386 scopus 로고    scopus 로고
    • Methods of single-molecule fluorescence spectroscopy and microscopy
    • Moerner WE, Fromm DP, (2003) Methods of single-molecule fluorescence spectroscopy and microscopy. Review of Scientific Instruments 74: 3597-3597.
    • (2003) Review of Scientific Instruments , vol.74 , pp. 3597
    • Moerner, W.E.1    Fromm, D.P.2
  • 18
    • 0023436481 scopus 로고
    • Hemocompatibility of hydrogel with polyethyleneoxide chains
    • Nakao A, Nagaoka S, Mori Y, (1987) Hemocompatibility of hydrogel with polyethyleneoxide chains. J Biomater Appl 2: 219-234.
    • (1987) J Biomater Appl , vol.2 , pp. 219-234
    • Nakao, A.1    Nagaoka, S.2    Mori, Y.3
  • 19
    • 33846706548 scopus 로고    scopus 로고
    • Customized PEG-derived copolymers for tissue-engineering applications
    • Tessmar JK, Göpferich AM, (2007) Customized PEG-derived copolymers for tissue-engineering applications. Macromol Biosci 7: 23-39.
    • (2007) Macromol Biosci , vol.7 , pp. 23-39
    • Tessmar, J.K.1    Göpferich, A.M.2
  • 21
    • 77953513171 scopus 로고    scopus 로고
    • Crosstalk between integrin and receptor tyrosine kinase signaling in breast carcinoma progression
    • Soung YH, Clifford JL, Chung J, (2010) Crosstalk between integrin and receptor tyrosine kinase signaling in breast carcinoma progression. BMB Rep 43: 311-318.
    • (2010) BMB Rep , vol.43 , pp. 311-318
    • Soung, Y.H.1    Clifford, J.L.2    Chung, J.3
  • 22
    • 0033947684 scopus 로고    scopus 로고
    • Integrin alpha 2 beta 1-dependent EGF receptor activation at cell-cell contact sites
    • Yu X, Miyamoto S, Mekada E, (2000) Integrin alpha 2 beta 1-dependent EGF receptor activation at cell-cell contact sites. J Cell Sci 113: 2139-2147.
    • (2000) J Cell Sci , vol.113 , pp. 2139-2147
    • Yu, X.1    Miyamoto, S.2    Mekada, E.3
  • 23
    • 0022444873 scopus 로고
    • Large deletions in the cytoplasmic kinase domain of the epidermal growth factor receptor do not affect its laternal mobility
    • Livneh E, Benveniste M, Prywes R, Felder S, Kam Z, et al. (1986) Large deletions in the cytoplasmic kinase domain of the epidermal growth factor receptor do not affect its laternal mobility. J Cell Biol 103: 327-331.
    • (1986) J Cell Biol , vol.103 , pp. 327-331
    • Livneh, E.1    Benveniste, M.2    Prywes, R.3    Felder, S.4    Kam, Z.5
  • 24
    • 0023766718 scopus 로고
    • Overexpression of epidermal growth factor receptor in NIH-3T3-transfected cells slows its lateral diffusion and rate of endocytosis
    • Benveniste M, Livneh E, Schlessinger J, Kam Z, (1988) Overexpression of epidermal growth factor receptor in NIH-3T3-transfected cells slows its lateral diffusion and rate of endocytosis. J Cell Biol 106: 1903-1909.
    • (1988) J Cell Biol , vol.106 , pp. 1903-1909
    • Benveniste, M.1    Livneh, E.2    Schlessinger, J.3    Kam, Z.4
  • 25
    • 23244442694 scopus 로고    scopus 로고
    • Cholesterol dictates the freedom of EGF receptors and HER2 in the plane of the membrane
    • Orr G, Hu D, Ozçelik S, Opresko LK, Wiley HS, et al. (2005) Cholesterol dictates the freedom of EGF receptors and HER2 in the plane of the membrane. Biophysical journal 89: 1362-1373.
    • (2005) Biophysical Journal , vol.89 , pp. 1362-1373
    • Orr, G.1    Hu, D.2    Ozçelik, S.3    Opresko, L.K.4    Wiley, H.S.5
  • 27
    • 77950460037 scopus 로고    scopus 로고
    • Spatial control of EGF receptor activation by reversible dimerization on living cells
    • Chung I, Akita R, Vandlen R, Toomre D, Schlessinger J, et al. (2010) Spatial control of EGF receptor activation by reversible dimerization on living cells. Nature 464: 783-787.
    • (2010) Nature , vol.464 , pp. 783-787
    • Chung, I.1    Akita, R.2    Vandlen, R.3    Toomre, D.4    Schlessinger, J.5
  • 28
    • 77149166955 scopus 로고    scopus 로고
    • Role of TI-VAMP and CD82 in EGFR cell-surface dynamics and signaling
    • Danglot L, Chaineau M, Dahan M, Gendron MC, Boggetto N, et al. (2010) Role of TI-VAMP and CD82 in EGFR cell-surface dynamics and signaling. J Cell Sci 123: 723-735.
    • (2010) J Cell Sci , vol.123 , pp. 723-735
    • Danglot, L.1    Chaineau, M.2    Dahan, M.3    Gendron, M.C.4    Boggetto, N.5
  • 29
    • 34548662875 scopus 로고    scopus 로고
    • Membrane mobility and microdomain association of the dopamine transporter studied with fluorescence correlation spectroscopy and fluorescence recovery after photobleaching
    • Adkins EM, Samuvel DJ, Fog JU, Eriksen J, Jayanthi LD, et al. (2007) Membrane mobility and microdomain association of the dopamine transporter studied with fluorescence correlation spectroscopy and fluorescence recovery after photobleaching. Biochemistry 46: 10484-10497.
    • (2007) Biochemistry , vol.46 , pp. 10484-10497
    • Adkins, E.M.1    Samuvel, D.J.2    Fog, J.U.3    Eriksen, J.4    Jayanthi, L.D.5
  • 30
    • 41049104403 scopus 로고    scopus 로고
    • Studies of distribution, location and dynamic properties of EGFR on the cell surface measured by image correlation spectroscopy
    • Keating E, Nohe A, Petersen NO, (2008) Studies of distribution, location and dynamic properties of EGFR on the cell surface measured by image correlation spectroscopy. European biophysics journal 37: 469-481.
    • (2008) European Biophysics Journal , vol.37 , pp. 469-481
    • Keating, E.1    Nohe, A.2    Petersen, N.O.3
  • 31
    • 34347264140 scopus 로고    scopus 로고
    • Spatially resolved total internal reflection fluorescence correlation microscopy using an electron multiplying charge-coupled device camera
    • Kannan B, Guo L, Sudhaharan T, Ahmed S, Maruyama I, et al. (2007) Spatially resolved total internal reflection fluorescence correlation microscopy using an electron multiplying charge-coupled device camera. Anal Chem 79: 4463-4470.
    • (2007) Anal Chem , vol.79 , pp. 4463-4470
    • Kannan, B.1    Guo, L.2    Sudhaharan, T.3    Ahmed, S.4    Maruyama, I.5
  • 32
    • 34447313361 scopus 로고    scopus 로고
    • Oligomerization of the EGF receptor investigated by live cell fluorescence intensity distribution analysis
    • Saffarian S, Li Y, Elson EL, Pike LJ, (2007) Oligomerization of the EGF receptor investigated by live cell fluorescence intensity distribution analysis. Biophysical journal 93: 1021-1031.
    • (2007) Biophysical Journal , vol.93 , pp. 1021-1031
    • Saffarian, S.1    Li, Y.2    Elson, E.L.3    Pike, L.J.4
  • 34
    • 43249092403 scopus 로고    scopus 로고
    • Antibody conjugates for cell biology
    • Chapter 16: Unit 16.15
    • Haugland RP (2001) Antibody conjugates for cell biology. Curr Protoc Cell Biol Chapter 16: Unit 16.15.
    • (2001) Curr Protoc Cell Biol
    • Haugland, R.P.1
  • 35
    • 60549118187 scopus 로고    scopus 로고
    • In vivo molecular imaging of cancer with a quenching near-infrared fluorescent probe using conjugates of monoclonal antibodies and indocyanine green
    • Ogawa M, Kosaka N, Choyke PL, Kobayashi H, (2009) In vivo molecular imaging of cancer with a quenching near-infrared fluorescent probe using conjugates of monoclonal antibodies and indocyanine green. Cancer Res 69: 1268-1272.
    • (2009) Cancer Res , vol.69 , pp. 1268-1272
    • Ogawa, M.1    Kosaka, N.2    Choyke, P.L.3    Kobayashi, H.4
  • 36
    • 84862651310 scopus 로고    scopus 로고
    • Evaluation of Four Affibody-Based Near-Infrared Fluorescent Probes for Optical Imaging of Epidermal Growth Factor Receptor Positive Tumors
    • Qi S, Miao Z, Liu H, Xu Y, Feng Y, et al. (2012) Evaluation of Four Affibody-Based Near-Infrared Fluorescent Probes for Optical Imaging of Epidermal Growth Factor Receptor Positive Tumors. Bioconjug Chem 23: 1149-1156.
    • (2012) Bioconjug Chem , vol.23 , pp. 1149-1156
    • Qi, S.1    Miao, Z.2    Liu, H.3    Xu, Y.4    Feng, Y.5
  • 37
    • 80053515350 scopus 로고    scopus 로고
    • Optics clustered to output unique solutions: a multi-laser facility for combined single molecule and ensemble microscopy
    • Clarke DT, Botchway SW, Coles BC, Needham SR, Roberts SK, et al. (2011) Optics clustered to output unique solutions: a multi-laser facility for combined single molecule and ensemble microscopy. The Review of scientific instruments 82: 093705.
    • (2011) The Review of Scientific Instruments , vol.82 , pp. 093705
    • Clarke, D.T.1    Botchway, S.W.2    Coles, B.C.3    Needham, S.R.4    Roberts, S.K.5
  • 38
    • 82755189439 scopus 로고    scopus 로고
    • Automated multidimensional single molecule fluorescence microscopy feature detection and tracking
    • Rolfe DJ, McLachlan CI, Hirsch M, Needham SR, Tynan CJ, et al. (2011) Automated multidimensional single molecule fluorescence microscopy feature detection and tracking. European biophysics journal 40: 1167-1186.
    • (2011) European Biophysics Journal , vol.40 , pp. 1167-1186
    • Rolfe, D.J.1    McLachlan, C.I.2    Hirsch, M.3    Needham, S.R.4    Tynan, C.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.