Novel tripartite aromatic acid transporter essential for terephthalate uptake in Comamonas sp. strain e6

Applied and Environmental Microbiology

Volumn 79, Issue 19, 2013, Pages 6148-6155

  Hosaka, Masaru ^a   Kamimura, Naofumi ^a   Toribami, Shotaro ^a   Mori, Kosuke ^a   Kasai, Daisuke ^a   Fukuda, Masao ^a   Masai, Eiji ^a  

^a NAGAOKA UNIVERSITY OF TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CATABOLIC GENES; CATABOLIC OPERON; MEMBRANE COMPONENTS; PROTOCATECHUATE; PROTON-MOTIVE FORCES; PSEUDOMONAS STRAIN; SUBSTRATE-BINDING; TRANS-MEMBRANE PROTEINS;

AROMATIC COMPOUNDS; ENCODING (SYMBOLS); GENE ENCODING; PROTEINS;

TRANSCRIPTION;

BACTERIUM; BIOLOGICAL UPTAKE; GENE EXPRESSION; GROWTH; ORGANIC ACID; PROTEIN; SUBSTRATE;

BACTERIAL DNA; CARRIER PROTEIN; PHTHALIC ACID DERIVATIVE; TEREPHTHALIC ACID;

ARTICLE; CHEMISTRY; COMAMONAS; DNA SEQUENCE; ENZYME SPECIFICITY; ENZYMOLOGY; GENE DELETION; GENE EXPRESSION PROFILING; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

COMAMONAS; DNA, BACTERIAL; GENE DELETION; GENE EXPRESSION PROFILING; MEMBRANE TRANSPORT PROTEINS; MOLECULAR SEQUENCE DATA; PHTHALIC ACIDS; SEQUENCE ANALYSIS, DNA; SUBSTRATE SPECIFICITY;

EID: 84884179751     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01600-13     Document Type: Article

References (45)

1. Pao SS, Paulsen IT, Saier MH, Jr. 1998. Major facilitator superfamily. Microbiol. Mol. Biol. Rev. 62:1-34.
2. Nichols NN, Harwood CS. 1997. PcaK, a high-affinity permease for the aromatic compounds 4-hydroxybenzoate and protocatechuate from Pseudomonas putida. J. Bacteriol. 179:5056-5061.
3. Leveau JH, Zehnder AJ, van der Meer JR. 1998. The tfdK gene product facilitates uptake of 2,4-dichlorophenoxyacetate by Ralstonia eutropha JMP134(pJP4). J. Bacteriol. 180:2237-2243.
4. Collier LS, Nichols NN, Neidle EL. 1997. benK encodes a hydrophobic permease-like protein involved in benzoate degradation by Acinetobacter sp. strain ADP1. J. Bacteriol. 179:5943-5946.
5. Xu Y, Wang SH, Chao HJ, Liu SJ, Zhou NY. 2012. Biochemical and molecular characterization of the gentisate transporter GenK in Corynebacterium glutamicum. PLoS One 7:e38701. doi:10.1371/journal.pone.0038701.
6. Xu Y, Gao X, Wang SH, Liu H, Williams PA, Zhou NY. 2012. MhbT is a specific transporter for 3-hydroxybenzoate uptake by Gram-negative bacteria. Appl. Environ. Microbiol. 78:6113-6120.
7. Davidson AL, Dassa E, Orelle C, Chen J. 2008. Structure, function, and evolution of bacterial ATP-binding cassette systems. Microbiol. Mol. Biol. Rev. 72:317-364.
8. Chang HK, Dennis JJ, Zylstra GJ. 2009. Involvement of two transport systems and a specific porin in the uptake of phthalate by Burkholderia spp. J. Bacteriol. 191:4671-4673.
9. Hara H, Stewart GR, Mohn WW. 2010. Involvement of a novel ABC transporter and monoalkyl phthalate ester hydrolase in phthalate ester catabolism by Rhodococcus jostii RHA1. Appl. Environ. Microbiol. 76: 1516-1523.
10. Arias-Barrau E, Sandoval A, Naharro G, Olivera ER, Luengo JM. 2005. A two-component hydroxylase involved in the assimilation of 3-hydroxyphenyl acetate in Pseudomonas putida. J. Biol. Chem. 280:26435-26447.
11. YuroffAS, Sabat G, Hickey WJ. 2003. Transporter-mediated uptake of 2-chloro- and 2-hydroxybenzoate by Pseudomonas huttiensis strain D1. Appl. Environ. Microbiol. 69:7401-7408.
12. Allende JL, Gibello A, Fortún A, Mengs G, Ferrer E, Martín M. 2000. 4-Hydroxybenzoate uptake in an isolated soil Acinetobacter sp. Curr. Microbiol. 40:34-39.
13. Allende JL, Gibello A, Martin M, Garrido-Pertierra A. 1992. Transport of 4-hydroxyphenylacetic acid in Klebsiella pneumoniae. Arch. Biochem. Biophys. 292:583-588.
14. Mulligan C, Fischer M, Thomas GH. 2011. Tripartite ATP-independent periplasmic (TRAP) transporters in bacteria and archaea. FEMS Microbiol. Rev. 35:68-86.
15. Winnen B, Hvorup RN, Saier MH, Jr. 2003. The tripartite tricarboxylate transporter (TTT) family. Res. Microbiol. 154:457-465.
16. Chae JC, Zylstra GJ. 2006. 4-Chlorobenzoate uptake in Comamonas sp. strain DJ-12 is mediated by a tripartite ATP-independent periplasmic transporter. J. Bacteriol. 188:8407-8412.
17. Sweet GD, Kay CM, Kay WW. 1984. Tricarboxylate-binding proteins of Salmonella typhimurium. Purification, crystallization, and physical properties. J. Biol. Chem. 259:1586-1592.
18. Widenhorn KA, Boos W, Somers JM, Kay WW. 1988. Cloning and properties of the Salmonella typhimurium tricarboxylate transport operon in Escherichia coli. J. Bacteriol. 170:883-888.
19. Widenhorn KA, Somers JM, Kay WW. 1988. Expression of the divergent tricarboxylate transport operon (tctI) of Salmonella typhimurium. J. Bacteriol. 170:3223-3227.
20. Antoine R, Jacob-Dubuisson F, Drobecq H, Willery E, Lesjean S, Locht C. 2003. Overrepresentation of a gene family encoding extracytoplasmic solute receptors in Bordetella. J. Bacteriol. 185:1470-1474.
21. Antoine R, Huvent I, Chemlal K, Deray I, Raze D, Locht C, Jacob-Dubuisson F. 2005. The periplasmic binding protein of a tripartite tricarboxylate transporter is involved in signal transduction. J. Mol. Biol. 351: 799-809.
22. Huvent I, Belrhali H, Antoine R, Bompard C, Locht C, Jacob-Dubuisson F, Villeret V. 2006. Crystal structure of Bordetella pertussis BugD solute receptor unveils the basis of ligand binding in a new family of periplasmic binding proteins. J. Mol. Biol. 356:1014-1026.
23. Sasoh M, Masai E, Ishibashi S, Hara H, Kamimura N, Miyauchi K, Fukuda M. 2006. Characterization of the terephthalate degradation genes of Comamonas sp. strain E6. Appl. Environ. Microbiol. 72:1825-1832.
24. Fukuhara Y, Inakazu K, Kodama N, Kamimura N, Kasai D, Katayama Y, Fukuda M, Masai E. 2010. Characterization of the isophthalate degradation genes of Comamonas sp. strain E6. Appl. Environ. Microbiol. 76:519-527.
25. Antoine R, Raze D, Locht C. 2000. Genomics of Bordetella pertussis toxins. Int. J. Med. Microbiol. 290:301-305.
26. Kasai D, Kamimura N, Tani K, Umeda S, Abe T, Fukuda M, Masai E. 2012. Characterization of FerC, a MarR-type transcriptional regulator, involved in transcriptional regulation of the ferulate catabolic operon in Sphingobium sp. strain SYK-6. FEMS Microbiol. Lett. 332:68-75.
27. Krogh A, Larsson B, von Heijne G, Sonnhammer EL. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305:567-580.
28. Claros MG, von Heijne G. 1994. TopPred II: an improved software for membrane protein structure predictions. Comput. Appl. Biosci. 10:685-686.
29. Hirokawa T, Boon-Chieng S, Mitaku S. 1998. SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinformatics 14:378-379.
30. Sato Y, Moriuchi H, Hishiyama S, Otsuka Y, Oshima K, Kasai D, Nakamura M, Ohara S, Katayama Y, Fukuda M, Masai E. 2009. Identification of three alcohol dehydrogenase genes involved in the stereospecific catabolism of arylglycerol-β-aryl ether by Sphingobium sp. strain SYK-6. Appl. Environ. Microbiol. 75:5195-5201.
31. Kamimura N, Aoyama T, Yoshida R, Takahashi K, Kasai D, Abe T, Mase K, Katayama Y, Fukuda M, Masai E. 2010. Characterization of the protocatechuate 4,5-cleavage pathway operon in Comamonas sp. strain E6 and discovery of a novel pathway gene. Appl. Environ. Microbiol. 76: 8093-8101.
32. Widenhorn KA, Somers JM, Kay WW. 1989. Genetic regulation of the tricarboxylate transport operon (tctI) of Salmonella typhimurium. J. Bacteriol. 171:4436-4441.
33. Ma YF, Zhang Y, Zhang JY, Chen DW, Zhu Y, Zheng H, Wang SY, Jiang CY, Zhao GP, Liu SJ. 2009. The complete genome of Comamonas testosteroni reveals its genetic adaptations to changing environments. Appl. Environ. Microbiol. 75:6812-6819.
34. Xiong J, Li D, Li H, He M, Miller SJ, Yu L, Rensing C, Wang G. 2011. Genome analysis and characterization of zinc efflux systems of a highly zinc-resistant bacterium, Comamonas testosteroni S44. Res. Microbiol. 162:671-679.
35. Gong W, Kisiela M, Schilhabel MB, Xiong G, Maser E. 2012. Genome sequence of Comamonas testosteroni ATCC 11996, a representative strain involved in steroid degradation. J. Bacteriol. 194:1633-1634.
36. Ohtsubo Y, Maruyama F, Mitsui H, Nagata Y, Tsuda M. 2012. Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinatedbiphenyl degrader. J. Bacteriol. 194:6970-6971.
37. Oosterkamp MJ, Veuskens T, Plugge CM, LangenhoffAA, Gerritse J, van Berkel WJ, Pieper DH, Junca H, Goodwin LA, Daligault HE, Bruce DC, Detter JC, Tapia R, Han CS, Land ML, Hauser LJ, Smidt H, Stams AJ. 2011. Genome sequences of Alicycliphilus denitrificans strains BC and K601T. J. Bacteriol. 193:5028-5029.
38. Yagi JM, Sims D, Brettin T, Bruce D, Madsen EL. 2009. The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tarcontaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer. Environ. Microbiol. 11:2253-2270.
39. Mattes TE, Alexander AK, Richardson PM, Munk AC, Han CS, Stothard P, Coleman NV. 2008. The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon-and xenobiotic-degrading bacterium, and features of relevance to biotechnology. Appl. Environ. Microbiol. 74:6405-6416.
40. De Luca G, Barakat M, Ortet P, Fochesato S, Jourlin-Castelli C, Ansaldi M, Py B, Fichant G, Coutinho PM, Voulhoux R, Bastien O, Marechal E, Henrissat B, Quentin Y, Noirot P, Filloux A, Mejean V, DuBow MS, Barras F, Barbe V, Weissenbach J, Mihalcescu I, Vermeglio A, Achouak W, Heulin T. 2011. The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment. PLoS One 6:e23784. doi:10.1371/journal.pone.0023784.
41. Han JI, Choi HK, Lee SW, Orwin PM, Kim J, Laroe SL, Kim TG, O'Neil J, Leadbetter JR, Lee SY, Hur CG, Spain JC, Ovchinnikova G, Goodwin L, Han C. 2011. Complete genome sequence of the metabolically versatile plant growth-promoting endophyte Variovorax paradoxus S110. J. Bacteriol. 193:1183-1190.
42. Michinobu T, Bito M, Yamada Y, Katayama Y, Noguchi K, Masai E, Nakamura M, Ohara S, Shigehara K. 2007. Molecular properties of 2-pyrone-4,6-dicarboxylic acid (PDC) as a stable metabolic intermediate of lignin isolated by fractional precipitation with Na ion. Bull. Chem. Soc. Jpn. 80:2436-2442.
43. Michinobu T, Hishida M, Sato M, Katayama Y, Masai E, Nakamura M, Otsuka Y, Ohara S, Shigehara K. 2008. Polyesters of 2-pyrone-4,6-dicarboxylic acid (PDC) obtained from a metabolic intermediate of lignin. Polym. J. 40:68-75.
44. Michinobu T, Bito M, Yamada Y, Tanimura M, Katayama Y, Masai E, Nakamura M, Otsuka Y, Ohara S, Shigehara K. 2009. Fusible, elastic, and biodegradable polyesters of 2-pyrone-4,6-dicarboxylic acid (PDC). Polym. J. 41:1111-1116.
45. Chang HK, Zylstra GJ. 1999. Characterization of the phthalate permease OphD from Burkholderia cepacia ATCC 17616. J. Bacteriol. 181:6197-6199.