-
1
-
-
0000393614
-
Electron microscope study of the association between some sponges and bacteria
-
Vacelet, J. & Donadey, C. Electron microscope study of the association between some sponges and bacteria. J Exp Mar Biol Ecol 30, 301-314 (1977).
-
(1977)
J Exp Mar Biol Ecol
, vol.30
, pp. 301-314
-
-
Vacelet, J.1
Donadey, C.2
-
2
-
-
19044378447
-
Microbial diversity of marine sponges
-
Hentschel, U. et al. Microbial diversity of marine sponges. Prog Mol Subcell Biol 37, 59-88 (2003).
-
(2003)
Prog Mol Subcell Biol
, vol.37
, pp. 59-88
-
-
Hentschel, U.1
-
3
-
-
33644942115
-
Marine sponges as microbial fermenters
-
Hentschel, U., Usher, K. M. & Taylor, M. W. Marine sponges as microbial fermenters. FEMS Microbiol Ecol 55, 167-177 (2006).
-
(2006)
FEMS Microbiol Ecol
, vol.55
, pp. 167-177
-
-
Hentschel, U.1
Usher, K.M.2
Taylor, M.W.3
-
4
-
-
84857121586
-
Assessing the complex sponge microbiota: Core, variable and species-specific bacterial communities in marine sponges
-
Schmitt, S. et al. Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges. ISME J 6, 564-576 (2012).
-
(2012)
ISME J
, vol.6
, pp. 564-576
-
-
Schmitt, S.1
-
5
-
-
84856569941
-
Spongespecific clusters revisited: A comprehensive phylogeny of sponge-associated microorganisms
-
Simister, R. L., Deines, P., Botté, E. S., Webster, N. S. & Taylor, M. W. Spongespecific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms. Environ Microbiol 14, 517-524 (2012).
-
(2012)
Environ Microbiol
, vol.14
, pp. 517-524
-
-
Simister, R.L.1
Deines, P.2
Botté, E.S.3
Webster, N.S.4
Taylor, M.W.5
-
6
-
-
84988202083
-
Partial carbon and energy budgets of the bacteriosponge verohgia fistularis (Porifera: Demospongiae) in barbados
-
Reiswig, H. M. Partial Carbon and Energy Budgets of the Bacteriosponge Verohgia fistularis (Porifera: Demospongiae) in Barbados. Mar Ecol 2, 273-293 (1981).
-
(1981)
Mar Ecol
, vol.2
, pp. 273-293
-
-
Reiswig H., .M.1
-
7
-
-
77950064311
-
Activity profiles for marine spongeassociated bacteria obtained by 16S rRNA vs 16S rRNA gene comparisons
-
Kamke, J., Taylor, M. W. & Schmitt, S. Activity profiles for marine spongeassociated bacteria obtained by 16S rRNA vs 16S rRNA gene comparisons. The ISME J 4, 498-508 (2010).
-
(2010)
The ISME J
, vol.4
, pp. 498-508
-
-
Kamke, J.1
Taylor, M.W.2
Schmitt, S.3
-
8
-
-
84870926204
-
Bacterial community profiles in low microbial abundance sponges
-
Giles, E. C. et al. Bacterial community profiles in low microbial abundance sponges. FEMS Microbiol Ecol 83, 232-241 (2013).
-
(2013)
FEMS Microbiol Ecol
, vol.83
, pp. 232-241
-
-
Giles, E.C.1
-
9
-
-
84879417299
-
Temporal molecular and isotopic analysis of active bacterial communities in two New Zealand sponges
-
doi: 10.1111/1574-6941.12109
-
Simister, R., Taylor, M. W., Rogers, K. M., Schupp, P. J. & Deines, P. Temporal molecular and isotopic analysis of active bacterial communities in two New Zealand sponges. FEMS Microbiol Ecol doi: 10.1111/1574-6941.12109 (2013).
-
(2013)
FEMS Microbiol Ecol
-
-
Simister, R.1
Taylor, M.W.2
Rogers, K.M.3
Schupp, P.J.4
Deines, P.5
-
10
-
-
0036729439
-
Molecular evidence for a uniform microbial community in sponges from different oceans
-
DOI 10.1128/AEM.68.9.4431-4440.2002
-
Hentschel, U. et al. Molecular evidence for a uniform microbial community in sponges from different oceans. Appl Environ Microbiol 68, 4431-4440 (2002). (Pubitemid 34988126)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.9
, pp. 4431-4440
-
-
Hentschel, U.1
Hopke, J.2
Horn, M.3
Friedrich, A.B.4
Wagner, M.5
Hacker, J.6
Moore, B.S.7
-
11
-
-
4444264936
-
Metabolites from symbiotic bacteria
-
DOI 10.1039/b310175b
-
Piel, J. Metabolites from symbiotic bacteria. Nat Prod Rep 21, 519-538 (2004). (Pubitemid 39182706)
-
(2004)
Natural Product Reports
, vol.21
, Issue.4
, pp. 519-538
-
-
Piel, J.1
-
12
-
-
0034142130
-
Highlights of marine natural products chemistry (1972-1999)
-
DOI 10.1039/a909113k
-
Faulkner, D. J. Highlights of marine natural products chemistry (1972-1999). Nat Prod Rep 17, 1-6 (2000). (Pubitemid 30097622)
-
(2000)
Natural Product Reports
, vol.17
, Issue.1
, pp. 1-6
-
-
Faulkner, D.J.1
-
13
-
-
0035023450
-
Multimodular biocatalysts for natural product assembly
-
DOI 10.1007/s001140100211
-
Schwarzer, D. & Marahiel, M. A. Multimodular biocatalysts for natural product assembly. Naturwissenschaften 88, 93-101 (2001). (Pubitemid 32417609)
-
(2001)
Naturwissenschaften
, vol.88
, Issue.3
, pp. 93-101
-
-
Schwarzer, D.1
Marahiel, M.A.2
-
14
-
-
33745782501
-
Diversity of polyketide synthase genes from bacteria associated with the marine sponge Pseudoceratina clavata: Culture-dependent and culture-independent approaches
-
DOI 10.1111/j.1462-2920.2006.01040.x
-
Kim, T. K. & Fuerst, J. A. Diversity of polyketide synthase genes from bacteria associated with themarine sponge Pseudoceratina clavata: culture-dependent and culture-independent approaches. Environ Microbiol 8, 1460-1470 (2006). (Pubitemid 44025338)
-
(2006)
Environmental Microbiology
, vol.8
, Issue.8
, pp. 1460-1470
-
-
Tae, K.K.1
Fuerst, J.A.2
-
15
-
-
0024798068
-
Ptilomycalin A: A novel polycyclic guanidine alkaloid of marine origin
-
Kashman, Y. et al. Ptilomycalin A: a novel polycyclic guanidine alkaloid ofmarine origin. J Am Chem Soc 111, 8925-8926 (1989). (Pubitemid 20050095)
-
(1989)
Journal of the American Chemical Society
, vol.111
, Issue.24
, pp. 8925-8926
-
-
Kashman, Y.1
Hirsh, S.2
McConnell, O.J.3
Ohtani, I.4
Kusumi, T.5
Kakisawa, H.6
-
16
-
-
0027385479
-
Polycyclic guanidine-containing compounds from the mediterranean sponge Crambe crambe: The structure of 13,14,15-isocrambescidin 800 and the absolute stereochemistry of the pentacyclic guanidine moieties of the crambescidins
-
DOI 10.1021/jo00070a012
-
Jares-Erijman, E. A., Ingrum, A. L., Carney, J. R., Rinehart, K. L. & Sakai, R. Polycyclic guanidine-containing compounds from the mediterranean sponge Crambe crambe: the structure of 13, 14, 15-isocrambescidin 800 and the absolute stereochemistry of the pentacyclic guanidine moieties of the crambescidins. J Org Chem 58, 4805-4808 (1993). (Pubitemid 23302424)
-
(1993)
Journal of Organic Chemistry
, vol.58
, Issue.18
, pp. 4805-4808
-
-
Jares-Erijman, E.A.1
Ingrum, A.L.2
Carney, J.R.3
Rinehart, K.L.4
Sakai, R.5
-
17
-
-
0025949243
-
Crambescidins: New antiviral and cytotoxic compounds from the sponge Crambe crambe
-
Jares-Erijman, E. A., Sakai, R. & Rinehart, K. L. Crambescidins: new antiviral and cytotoxic compounds from the sponge Crambe crambe. J Org Chem 56, 5712-5715 (1991).
-
(1991)
J Org Chem
, vol.56
, pp. 5712-5715
-
-
Jares-Erijman, E.A.1
Sakai, R.2
Rinehart, K.L.3
-
18
-
-
0008376247
-
Isolation of Crambescidin 800 from Monanchora arbuscula (Porifera)
-
Tavares, R. et al. Isolation of Crambescidin 800 from Monanchora arbuscula (Porifera). Biochem Syst Ecol 22, 645-646 (1994).
-
(1994)
Biochem Syst Ecol
, vol.22
, pp. 645-646
-
-
Tavares, R.1
-
19
-
-
0030995278
-
Batzelladines F-I, novel alkaloids from the sponge Batzella sp.: Inducers of p56lck-CD4 dissociation
-
Patil, A. D. et al. Batzelladines F-I, novel alkaloids from the sponge Batzella sp.: Inducers of p56lck-CD4 dissociation. J Orga Chem 62, 1814-1819 (1997).
-
(1997)
J Orga Chem
, vol.62
, pp. 1814-1819
-
-
Patil, A.D.1
-
20
-
-
0019840547
-
Ptilocaulin and isoptilocaulin, antimicrobial and cytotoxic cyclic guanidines from the Caribbean sponge Ptilocaulis aff. P. spiculifer (Lamarck, 1814)
-
Harbour, G. C. et al. Ptilocaulin and isoptilocaulin, antimicrobial and cytotoxic cyclic guanidines from the Caribbean sponge Ptilocaulis aff. P. spiculifer (Lamarck, 1814). J Am Chem Soc 103, 5604-5606 (1981). (Pubitemid 12198549)
-
(1981)
Journal of the American Chemical Society
, vol.103
, Issue.18
, pp. 5604-5606
-
-
Harbour, G.C.1
Tymiak, A.A.2
Rinehart Jr., K.L.3
-
21
-
-
0028325392
-
Biomimetic synthesis of the pentacyclic nucleus of ptilomycalin A
-
Snider, B. B. & Shi, Z. Biomimetic synthesis of the pentacyclic nucleus of ptilomycalin A. J Am Chem Soc 116, 549-557 (1994).
-
(1994)
J Am Chem Soc
, vol.116
, pp. 549-557
-
-
Snider, B.B.1
Shi, Z.2
-
22
-
-
0027282603
-
++ channel blocker activity of crambescidin 816
-
Berlinck, R. G. S. et al. Polycyclic guanidine alkaloids from the marine sponge Crambe crambe and Ca11 channel blocker activity of crambescidin 816. J Nat Prod 56, 1007-1015 (1993). (Pubitemid 23222200)
-
(1993)
Journal of Natural Products (Lloydia)
, vol.56
, Issue.7
, pp. 1007-1015
-
-
Berlinck, R.G.S.1
Braekman, J.C.2
Daloze, D.3
Bruno, I.4
Riccio, R.5
Ferri, S.6
Spampinato, S.7
Speroni, E.8
-
23
-
-
0028159788
-
Antimicrobial activity and surface bacterial film in marine sponges
-
Becerro, M. A., Lopez, N. I., Turon, X. & Uriz, M. J. Antimicrobial activity and surface bacterial film in marine sponges. J Exp Mar Biol Ecol 179, 195-205 (1994).
-
(1994)
J Exp Mar Biol Ecol
, vol.179
, pp. 195-205
-
-
Becerro, M.A.1
Lopez, N.I.2
Turon, X.3
Uriz, M.J.4
-
24
-
-
0029837833
-
Location of toxicity within the mediterranean sponge Crambe crambe (Demospongiae: Poecilosclerida)
-
Uriz, M. J., Becerro, M. A., Tur, J. M. & Turon, X. Location of toxicity within the Mediterranean sponge Crambe crambe (Demospongiae: Poecilosclerida). Mar Biol 124, 583-590 (1996). (Pubitemid 26315411)
-
(1996)
Marine Biology
, vol.124
, Issue.4
, pp. 583-590
-
-
Uriz, M.J.1
Becerro, M.A.2
Tur, J.M.3
Turon, X.4
-
25
-
-
0038241003
-
Associazionia fra Poriferi e alghe in acque superficiali det litorale marino
-
Sarà, M. Associazionia fra Poriferi e alghe in acque superficiali det litorale marino. Ricerca scient 36, 277-282 (1966).
-
(1966)
Ricerca Scient
, vol.36
, pp. 277-282
-
-
Sarà, M.1
-
26
-
-
33845606325
-
Spatial distribution of sponge-associated bacteria in the Mediterranean sponge Tethya aurantium
-
DOI 10.1111/j.1574-6941.2006.00217.x
-
Thiel, V., Neulinger, S. C., Staufenberger, T., Schmaljohann, R. & Imhoff, J. F. Spatial distribution of sponge-associated bacteria in the Mediterranean sponge Tethya aurantium. FEMS Microbiol Ecol 59, 47-63 (2007). (Pubitemid 44952408)
-
(2007)
FEMS Microbiology Ecology
, vol.59
, Issue.1
, pp. 47-63
-
-
Thiel, V.1
Neulinger, S.C.2
Staufenberger, T.3
Schmaljohann, R.4
Imhoff, J.F.5
-
27
-
-
15444370404
-
Coexistence of bacterial sulfide oxidizers, sulfate reducers, and spirochetes in a gutless worm (oligochaeta) from the Peru margin
-
DOI 10.1128/AEM.71.3.1553-1561.2005
-
Blazejak, A., Erséus, C., Amann, R. & Dubilier, N. Coexistence of bacterial sulfide oxidizers, sulfate reducers, and spirochetes in a gutless worm (Oligochaeta) from the Peru margin. Appl Environ Microbiol 71, 1553-1561 (2005). (Pubitemid 40396696)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.3
, pp. 1553-1561
-
-
Blazejak, A.1
Erseus, C.2
Amann, R.3
Dubilier, N.4
-
28
-
-
0035652813
-
Morphology and ultrastructure of the swimming larvae of Crambe crambe (Demospongiae, Poecilosclerida)
-
Uriz, M. J., Turon, X. & Becerro, M. A. Morphology and ultrastructure of the swimming larvae of Crambe crambe (Demospongiae, Poecilosclerida). Invert Biol 120, 295-307 (2001).
-
(2001)
Invert Biol
, vol.120
, pp. 295-307
-
-
Uriz, M.J.1
Turon, X.2
Becerro, M.A.3
-
29
-
-
78149272458
-
Genomic and functional adaptation in surface ocean planktonic prokaryotes
-
Yooseph, S. et al. Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature 468, 60-66 (2010).
-
(2010)
Nature
, vol.468
, pp. 60-66
-
-
Yooseph, S.1
-
30
-
-
0031786325
-
Accelerated evolutionary rate in sulfur-oxidizing endosymbiotic bacteria associated with the mode of symbiont transmission
-
Peek, A. S., Vrijenhoek, R. C. & Gaut, B. S. Accelerated evolutionary rate in sulfuroxidizing endosymbiotic bacteria associated with the mode of symbiont transmission. Mol Biol Evol 15, 1514-1523 (1998). (Pubitemid 28511932)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.11
, pp. 1514-1523
-
-
Peek, A.S.1
Vrijenhoek, R.C.2
Gaut, B.S.3
-
31
-
-
0242386452
-
Tracing the evolution of gene loss in obligate bacterial symbionts
-
DOI 10.1016/j.mib.2003.08.001
-
Moran, N. A. Tracing the evolution of gene loss in obligate bacterial symbionts. Curr Opin Microbiol 6, 512-518 (2003). (Pubitemid 37345418)
-
(2003)
Current Opinion in Microbiology
, vol.6
, Issue.5
, pp. 512-518
-
-
Moran, N.A.1
-
32
-
-
0035208354
-
Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton
-
DOI 10.1046/j.1462-2920.2001.00198.x
-
Suzuki, M. T., Beja, O., Taylor, L. T. & DeLong, E. F. Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton. Environ Microbiol 3, 323-331 (2001). (Pubitemid 33141489)
-
(2001)
Environmental Microbiology
, vol.3
, Issue.5
, pp. 323-331
-
-
Suzuki, M.T.1
Beja, O.2
Taylor, L.T.3
DeLong, E.F.4
-
33
-
-
0028846151
-
Characterization of the unlinked 16S RDNA and 23S-5S RRNA operon of wolbachia pipientis a prokaryotic parasite of insect gonads
-
Bensaadi-Merchermek, N., Salvado, J. C., Cagnon, C., Karama, S. & Mouchès, C. Characterization of the unlinked 16S rDNA and 23S-5S rRNA operon of Wolbachia pipientis, a prokaryotic parasite of insect gonads. Gene 165, 81-86 (1995).
-
(1995)
Gene
, vol.165
, pp. 81-86
-
-
Bensaadi-Merchermek, N.1
Salvado, J.C.2
Cagnon, C.3
Karama, S.4
Mouchès, C.5
-
34
-
-
0036022493
-
Conservation of the unique rickettsial rRNA gene arrangement in Anaplasma
-
DOI 10.1099/ijs.0.02145-0
-
Rurangirwa, F. R., Brayton, K. A.,McGuire, T. C., Knowles, D. P. & Palmer, G. H. Conservation of the unique rickettsial rRNA gene arrangement in Anaplasma. IJSEM 52, 1405-1409 (2002). (Pubitemid 34846442)
-
(2002)
International Journal of Systematic and Evolutionary Microbiology
, vol.52
, Issue.4
, pp. 1405-1409
-
-
Rurangirwa, F.R.1
Brayton, K.A.2
McGuire, T.C.3
Knowles, D.P.4
Palmer, G.H.5
-
35
-
-
0035493393
-
Vertical transmission of cyanobacterial symbionts in the marine sponge Chondrilla australiensis (Demospongiae)
-
Usher, K. M., Kuo, J., Fromont, J. & Sutton, D. C. Vertical transmission of cyanobacterial symbionts in the marine sponge Chondrilla australiensis (Demospongiae). Hydrobiologia 461, 9-13 (2001).
-
(2001)
Hydrobiologia
, vol.461
, pp. 9-13
-
-
Usher, K.M.1
Kuo, J.2
Fromont, J.3
Sutton, D.C.4
-
36
-
-
33846426845
-
Vertical transmission of diverse microbes in the tropical sponge Corticium sp
-
DOI 10.1128/AEM.01493-06
-
Sharp, K. H., Eam, B., Faulkner, D. J. & Haygood, M. G. Vertical transmission of diverse microbes in the tropical sponge Corticium sp. Appl Environ Microbiol 73, 622-629 (2007). (Pubitemid 46147594)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.2
, pp. 622-629
-
-
Sharp, K.H.1
Eam, B.2
John Faulkner, D.3
Haygood, M.G.4
-
37
-
-
57449117293
-
Molecular microbial diversity survey of sponge reproductive stages and mechanistic insights into vertical transmission of microbial symbionts
-
Schmitt, S., Angermeier, H., Schiller, R., Lindquist, N. & Hentschel, U. Molecular Microbial Diversity Survey of Sponge Reproductive Stages and Mechanistic Insights into Vertical Transmission of Microbial Symbionts. Appl Environ Microbiol 74, 7694-7708 (2008).
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 7694-7708
-
-
Schmitt, S.1
Angermeier, H.2
Schiller, R.3
Lindquist, N.4
Hentschel, U.5
-
38
-
-
74949096848
-
Sponge-microbial interactions: Ecological implications and bioprospecting avenues
-
Selvin, J., Ninawe, A. S., Seghal Kiran, G. & Lipton, A. P. Sponge-microbial interactions: Ecological implications and bioprospecting avenues. Crit Rev Microbiol 36, 82-90 (2010).
-
(2010)
Crit Rev Microbiol
, vol.36
, pp. 82-90
-
-
Selvin, J.1
Ninawe, A.S.2
Seghal Kiran, G.3
Lipton, A.P.4
-
39
-
-
0018581287
-
Investigations on the lectin-producing cells in the sponge Axinella polypoides (Schmidt)
-
Bretting, H. & Konigsmann, K. Investigations on the lectin-producing cells in the sponge Axinella polypoides (Schmidt). Cell Tissue Res 201, 487-497 (1979). (Pubitemid 10196047)
-
(1979)
Cell and Tissue Research
, vol.201
, Issue.3
, pp. 487-497
-
-
Bretting, H.1
Koenigsmann, K.2
-
40
-
-
48749149940
-
Localization of two brominated metabolites, aerothionin and homoaerothionin, in spherulous cells of the marine sponge Aplysina fistularis (5 Verongia thiona)
-
Thompson, J. E., Barrow, K. D. & Faulkner, D. J. Localization of two brominated metabolites, aerothionin and homoaerothionin, in spherulous cells of the marine sponge Aplysina fistularis (5 Verongia thiona). Acta Zool 64, 199-210 (1983).
-
(1983)
Acta Zool
, vol.64
, pp. 199-210
-
-
Thompson, J.E.1
Barrow, K.D.2
Faulkner, D.J.3
-
41
-
-
84862998261
-
Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts
-
Fan, L. et al. Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts. PNAS 109, E1878-E1887 (2012).
-
(2012)
PNAS
, vol.109
-
-
Fan, L.1
-
42
-
-
78650591665
-
Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges
-
Siegl, A. et al. Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges. ISME J 5, 61-70 (2011).
-
(2011)
ISME J
, vol.5
, pp. 61-70
-
-
Siegl, A.1
-
43
-
-
0035158608
-
Phylogenetic diversity of bacteria associated with the marine sponge Rhopaloeides odorabile
-
DOI 10.1128/AEM.67.1.434-444.2001
-
Webster, N. S., Wilson, K. J., Blackall, L. L. & Hill, R. T. Phylogenetic Diversity of Bacteria Associated with the Marine Sponge Rhopaloeides odorabile. Appl Environ Microbiol 67, 434-444 (2001). (Pubitemid 32044447)
-
(2001)
Applied and Environmental Microbiology
, vol.67
, Issue.1
, pp. 434-444
-
-
Webster, N.S.1
Wilson, K.J.2
Blackall, L.L.3
Hill, R.T.4
-
44
-
-
0031927992
-
Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales
-
Vergin, K. L. et al. Screening of a Fosmid Library of Marine Environmental Genomic DNA Fragments Reveals Four Clones Related to Members of the OrderPlanctomycetales. Appl Environ Microbiol 64, 3075-3078 (1998). (Pubitemid 28363188)
-
(1998)
Applied and Environmental Microbiology
, vol.64
, Issue.8
, pp. 3075-3078
-
-
Vergin, K.L.1
Urbach, E.2
Stein, J.L.3
DeLong, E.F.4
Lanoil, B.D.5
Giovannoni, S.J.6
-
45
-
-
0001868073
-
Denaturing gradient gel electrophoresis (DGGE) in microbial ecology
-
(ed Akkermans, A., Van Elsas, J. & De Bruijn, F.) 3.4.4 (Dordrecht)
-
Muyzer, G. et al. Denaturing gradient gel electrophoresis (DGGE) in microbial ecology. In Kluwer Academic (ed Akkermans, A., Van Elsas, J. & De Bruijn, F.) 3.4.4, 1-27 (Dordrecht, 1998).
-
(1998)
Kluwer Academic
, pp. 1-27
-
-
Muyzer, G.1
-
46
-
-
0029592773
-
A new DNA sequence assembly program
-
Bonfield, J. K., Smith, K. F. & Staden, R. A new DNA sequence assembly program. Nucleic Acids Res 23, 4992-4999 (1995). (Pubitemid 26012480)
-
(1995)
Nucleic Acids Research
, vol.23
, Issue.24
, pp. 4992-4999
-
-
Bonfield, J.K.1
Smith, K.F.2
Staden, R.3
-
47
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C. & Knight, R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194-2200 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
48
-
-
5044240973
-
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
-
DOI 10.1093/bioinformatics/bth226
-
Huber, T., Faulkner, G. & Hugenholtz, P. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20, 2317-2319 (2004). (Pubitemid 39341624)
-
(2004)
Bioinformatics
, vol.20
, Issue.14
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
49
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D. et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75, 7537-7541 (2009).
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
-
50
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
-
Quast, C. et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41, D590-D596 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Quast, C.1
-
51
-
-
2542523843
-
ARB: A software environment for sequence data
-
DOI 10.1093/nar/gkh293
-
Ludwig, W. et al. ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371 (2004). (Pubitemid 38854737)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.4
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar, A.6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jacob, G.10
Forster, W.11
Brettske, I.12
Gerber, S.13
Ginhart, A.W.14
Gross, O.15
Grumann, S.16
Hermann, S.17
Jost, R.18
Konig, A.19
Liss, T.20
Lussbmann, R.21
May, M.22
Nonhoff, B.23
Reichel, B.24
Strehlow, R.25
Stamatakis, A.26
Stuckmann, N.27
Vilbig, A.28
Lenke, M.29
Ludwig, T.30
Bode, A.31
Schleifer, K.-H.32
more..
-
52
-
-
0003437302
-
-
Distributed by the author. Department of Genome Sciences, University of Washington, Seattle
-
Felsenstein, J. PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle (2005).
-
(2005)
PHYLIP (Phylogeny Inference Package) Version 3.6
-
-
Felsenstein, J.1
-
53
-
-
84860109324
-
MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space
-
Ronquist, F. et al. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space. Syst Biol 61, 539-542 (2012).
-
(2012)
Syst Biol
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
-
54
-
-
53749097505
-
Polymicrobial nature of chronic diabetic foot ulcer biofilm infections determined using bacterial tag encoded FLX amplicon pyrosequencing (bTEFAP)
-
Dowd, S. E. et al. Polymicrobial nature of chronic diabetic foot ulcer biofilm infections determined using bacterial tag encoded FLX amplicon pyrosequencing (bTEFAP). PLoS One 3, e3326 (2008).
-
(2008)
PLoS One
, vol.3
-
-
Dowd, S.E.1
-
55
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
Quince, C., Lanzen, A., Davenport, R. J. & Turnbaugh, P. J. Removing noise from pyrosequenced amplicons. BMC bioinformatics 12, 38 (2011).
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzen, A.2
Davenport, R.J.3
Turnbaugh, P.J.4
-
56
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7, 335-336 (2010).
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
57
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar R., .C.1
-
58
-
-
0033855457
-
Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes
-
DOI 10.1128/AEM.66.8.3603-3607.2000
-
Fuchs, B. M., Glockner, F. O., Wulf, J. & Amann, R. Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes. Appl Environ Microbiol 66, 3603-3607 (2000). (Pubitemid 30624603)
-
(2000)
Applied and Environmental Microbiology
, vol.66
, Issue.8
, pp. 3603-3607
-
-
Fuchs, B.M.1
Glockner, F.O.2
Wulf, J.3
Amann, R.4
-
59
-
-
44949092444
-
Cloning and retinal expression of melatonin receptors in the European sea bass, Dicentrarchus labrax
-
DOI 10.1016/j.ygcen.2008.04.008, PII S0016648008001408
-
Sauzet, S. et al. Cloning and retinal expression of melatonin receptors in the European sea bass, Dicentrarchus labrax. Gen Comp Endocrinol 157, 186-195 (2008). (Pubitemid 351802216)
-
(2008)
General and Comparative Endocrinology
, vol.157
, Issue.2
, pp. 186-195
-
-
Sauzet, S.1
Besseau, L.2
Herrera Perez, P.3
Coves, D.4
Chatain, B.5
Peyric, E.6
Boeuf, G.7
Munoz-Cueto, J.A.8
Falcon, J.9
-
60
-
-
0036276618
-
Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
-
DOI 10.1128/AEM.68.6.3094-3101.2002
-
Pernthaler, A., Pernthaler, J. & Amann, R. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol 68, 3094-3101 (2002). (Pubitemid 34602035)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.6
, pp. 3094-3101
-
-
Pernthaler, A.1
Pernthaler, J.2
Amann, R.3
-
61
-
-
0033868422
-
Silica deposition in Demosponges: Spiculogenesis in Crambe crambe
-
Uriz, M. J., Turon, X. & Becerro, M. A. Silica deposition in Demosponges: spiculogenesis in Crambe crambe. Cell Tissue Res 301, 299-309 (2000). (Pubitemid 30601562)
-
(2000)
Cell and Tissue Research
, vol.301
, Issue.2
, pp. 299-309
-
-
Uriz, M.J.1
Turon, X.2
Becerro, M.A.3
-
62
-
-
0025294528
-
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
-
Amann, R. et al. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56, 1919-1925 (1990). (Pubitemid 20202165)
-
(1990)
Applied and Environmental Microbiology
, vol.56
, Issue.6
, pp. 1919-1925
-
-
Amann, R.I.1
Binder, B.J.2
Olson, R.J.3
Chisholm, S.W.4
Devereux, R.5
Stahl, D.A.6
-
63
-
-
0027339723
-
Optimizing fluorescent in sit hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms
-
DOI 10.1002/cyto.990140205
-
Wallner, G., Amann, R. & Beisker, W. Optimizing fluorescent in situ hybridization of suspended cells with rRNA-targeted oligonucleotide probes for the flow cytometric identification of microorganisms. Cytometry 14, 136-143 (1993). (Pubitemid 23042736)
-
(1993)
Cytometry
, vol.14
, Issue.2
, pp. 136-143
-
-
Wallner, G.1
Amann, R.2
Beisker, W.3
-
64
-
-
0027068041
-
Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions
-
Manz, W., Amann, R., Ludwig, W. & Schleifer, K. H. Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst and Appl Microbiol 15, 593-600 (1992). (Pubitemid 23036075)
-
(1992)
Systematic and Applied Microbiology
, vol.15
, Issue.4
, pp. 593-600
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Wagner, M.4
Schleifer, K.-H.5
-
65
-
-
0003341851
-
Development and application of nucleic acid probes
-
(eds Stackebrandt, E. & Goodfellow, M.) (Wiley & Sons)
-
Stahl, D. A. & Amann, R. Development and application of nucleic acid probes. In Nucleic acid techniques in bacterial systematics (eds Stackebrandt, E. & Goodfellow, M.) 205-248 (Wiley & Sons, 1991).
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 205-248
-
-
Stahl, D.A.1
Amann, R.2
|