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Volumn 15, Issue 11, 1998, Pages 1514-1523

Accelerated evolutionary rate in sulfur-oxidizing endosymbiotic bacteria associated with the mode of symbiont transmission

Author keywords

16S rDNA domains; Bacterial symbiosis; Chemoautotrophic sulfur oxidation; Loop stem; Nearly neutral substitution rate; Selective constraint

Indexed keywords

RIBOSOME DNA; RNA 16S; BACTERIAL DNA; SULFUR;

EID: 0031786325     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025879     Document Type: Article
Times cited : (36)

References (53)
  • 1
    • 0028178961 scopus 로고
    • Vertical transmission of a chemoautotrophic symbiont in the protobranch bivalve
    • CARY, S. C. 1994. Vertical transmission of a chemoautotrophic symbiont in the protobranch bivalve. Mol. Mar. Biol. Biotechnol. 3:121-130.
    • (1994) Mol. Mar. Biol. Biotechnol. , vol.3 , pp. 121-130
    • Cary, S.C.1
  • 2
    • 0027211060 scopus 로고
    • Transovarial inheritance of endosymbiotic bacteria in clams inhabiting deep-sea hydrothermal vents and cold seeps
    • CARY, S. C., and S. J. GIOVANNONI. 1993. Transovarial inheritance of endosymbiotic bacteria in clams inhabiting deep-sea hydrothermal vents and cold seeps. Proc. Natl. Acad. Sci. USA 90:5695-5699.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 5695-5699
    • Cary, S.C.1    Giovannoni, S.J.2
  • 3
    • 0027551748 scopus 로고
    • Identification and localization of bacterial endosymbionts in hydrothermal vent taxa with symbiont-specific polymerase chain reaction amplification and in situ hybridization techniques
    • CARY, S. C., W. WARREN, E. ANDERSON, and S. J. GIOVANNONI. 1993. Identification and localization of bacterial endosymbionts in hydrothermal vent taxa with symbiont-specific polymerase chain reaction amplification and in situ hybridization techniques. Mol. Mar. Biol. Biotechnol. 2:51-62.
    • (1993) Mol. Mar. Biol. Biotechnol. , vol.2 , pp. 51-62
    • Cary, S.C.1    Warren, W.2    Anderson, E.3    Giovannoni, S.J.4
  • 4
    • 0031053746 scopus 로고    scopus 로고
    • Chromatium glycolicum sp. nov., a moderately halophilic purple sulfur bacterium that uses glycolate as substrate
    • CAUMETTE, P., J. F. IMHOFF, J. SULING, and R. MATHERON. 1997. Chromatium glycolicum sp. nov., a moderately halophilic purple sulfur bacterium that uses glycolate as substrate. Arch. Microbiol. 167:11-18.
    • (1997) Arch. Microbiol. , vol.167 , pp. 11-18
    • Caumette, P.1    Imhoff, J.F.2    Suling, J.3    Matheron, R.4
  • 5
    • 0024375425 scopus 로고
    • The functional role of ribosomal RNA in protein synthesis
    • DAHLBERG, A. E. 1989. The functional role of ribosomal RNA in protein synthesis. Cell 57:525-529.
    • (1989) Cell , vol.57 , pp. 525-529
    • Dahlberg, A.E.1
  • 6
    • 0029897169 scopus 로고    scopus 로고
    • Rampant horizontal transfer and duplication of Rubisco genes in Eubacteria and plastids
    • DELWICHE, C. F., and J. D. PALMER. 1996. Rampant horizontal transfer and duplication of Rubisco genes in Eubacteria and plastids. Mol. Biol. Evol. 13:873-882.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 873-882
    • Delwiche, C.F.1    Palmer, J.D.2
  • 7
    • 0028293671 scopus 로고
    • Independent phylogenetic origins of methanotrophic and chemoautotrophic bacterial endosymbioses in marine bivalves
    • DISTEL, D. L., and C. M. CAVANAUGH. 1994. Independent phylogenetic origins of methanotrophic and chemoautotrophic bacterial endosymbioses in marine bivalves. J. Bacteriol. 176:1932-1938.
    • (1994) J. Bacteriol. , vol.176 , pp. 1932-1938
    • Distel, D.L.1    Cavanaugh, C.M.2
  • 8
    • 0028279051 scopus 로고
    • Evidence for phylogenetic congruence among sulphur-oxidizing chemoautotrophic bacterial symbionts and their bivalve hosts
    • DISTEL, D. L., H. FELBECK, and C. M. CAVANAUGH. 1994. Evidence for phylogenetic congruence among sulphur-oxidizing chemoautotrophic bacterial symbionts and their bivalve hosts. J. Mol. Evol. 38:533-542.
    • (1994) J. Mol. Evol. , vol.38 , pp. 533-542
    • Distel, D.L.1    Felbeck, H.2    Cavanaugh, C.M.3
  • 10
    • 0026779909 scopus 로고
    • Characterization of the gill symbiont of Thyasira flexuosa (Thyasiridae: Bivalvia) by use of polymerase chain reaction and 16S rRNA sequence analysis
    • DISTEL, D. L., and A. P. WOOD. 1992. Characterization of the gill symbiont of Thyasira flexuosa (Thyasiridae: Bivalvia) by use of polymerase chain reaction and 16S rRNA sequence analysis. J. Bacteriol. 174:6317-6320.
    • (1992) J. Bacteriol. , vol.174 , pp. 6317-6320
    • Distel, D.L.1    Wood, A.P.2
  • 11
    • 0027500136 scopus 로고
    • Ribosomal RNA secondary structure: Compensatory mutations and implications for phylogenetic analysis
    • DIXON, M. T., and D. M. HILLIS. 1993. Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis. Mol. Biol. Evol. 10:256-267.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 256-267
    • Dixon, M.T.1    Hillis, D.M.2
  • 12
    • 0030069402 scopus 로고    scopus 로고
    • Phylogenetic characterization of sulfur-oxidizing bacterial endosymbionts in three tropical Lucinidae by 16S rDNA sequence analysis
    • DURAND, P., O. GROS, L. FRENKIEL, and D. PRIEUR. 1996. Phylogenetic characterization of sulfur-oxidizing bacterial endosymbionts in three tropical Lucinidae by 16S rDNA sequence analysis. Mol. Mar. Biol. Biotechnol. 5:37-42.
    • (1996) Mol. Mar. Biol. Biotechnol. , vol.5 , pp. 37-42
    • Durand, P.1    Gros, O.2    Frenkiel, L.3    Prieur, D.4
  • 13
    • 0027186961 scopus 로고
    • Isolation and characterization of Thiobacillus hydrothermalis sp. nov., a mesophilic obligately chemolithotrophic bacterium isolated from a deep-sea hydrothermal vent in Fiji Basin
    • DURAND, P., A.-L. REYSENBACH, D. PRIEUR, and N. PACE. 1993. Isolation and characterization of Thiobacillus hydrothermalis sp. nov., a mesophilic obligately chemolithotrophic bacterium isolated from a deep-sea hydrothermal vent in Fiji Basin. Arch. Microbiol. 159:39-44.
    • (1993) Arch. Microbiol. , vol.159 , pp. 39-44
    • Durand, P.1    Reysenbach, A.-L.2    Prieur, D.3    Pace, N.4
  • 14
    • 0026750173 scopus 로고
    • Phylogenetic relationships of chemoautotrophic bacterial symbionts of Solemya velum Say (Mollusa: Bivalvia) determined by 16S rRNA gene sequence analysis
    • EISEN, J. A., S. W. SMITH, and C. M. CAVANAUGH. 1992. Phylogenetic relationships of chemoautotrophic bacterial symbionts of Solemya velum Say (Mollusa: Bivalvia) determined by 16S rRNA gene sequence analysis. J. Bacteriol. 174:3416-3421.
    • (1992) J. Bacteriol. , vol.174 , pp. 3416-3421
    • Eisen, J.A.1    Smith, S.W.2    Cavanaugh, C.M.3
  • 15
    • 0001276853 scopus 로고
    • Occurrence of bacteria in the primary oocytes of vesicomyid clam Calyptogena soyoae
    • ENDOW, K., and S. OHTA. 1990. Occurrence of bacteria in the primary oocytes of vesicomyid clam Calyptogena soyoae. Mar. Ecol. Prog. Ser. 64:309-317.
    • (1990) Mar. Ecol. Prog. Ser. , vol.64 , pp. 309-317
    • Endow, K.1    Ohta, S.2
  • 16
    • 0026652711 scopus 로고
    • Two forms of ribulose-1,5-bisphosphate carboxylase/oxygenase from Thiobacillus denitrificans
    • ENGLISH, R. S., C. A. WILLIAMS, S. C. LORBACH, and J. M. SHIVELY. 1992. Two forms of ribulose-1,5-bisphosphate carboxylase/oxygenase from Thiobacillus denitrificans. FEMS Microbiol. Lett. 94:111-120.
    • (1992) FEMS Microbiol. Lett. , vol.94 , pp. 111-120
    • English, R.S.1    Williams, C.A.2    Lorbach, S.C.3    Shively, J.M.4
  • 18
    • 0030900384 scopus 로고    scopus 로고
    • Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperatures in prokaryotes
    • GALTIER, N., and J. R. LOBRY. 1997. Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperatures in prokaryotes. J. Mol. Evol. 44: 632-636.
    • (1997) J. Mol. Evol. , vol.44 , pp. 632-636
    • Galtier, N.1    Lobry, J.R.2
  • 19
    • 0001657535 scopus 로고
    • Using maximum likelihood to infer selection from phytogenies
    • B. GOLDING, ed. Chapman and Hall, New York
    • GOLDING, B. 1994. Using maximum likelihood to infer selection from phytogenies. Pp. 127-139 in B. GOLDING, ed. Non-neutral evolution, theories and molecular data. Chapman and Hall, New York.
    • (1994) Non-neutral Evolution, Theories and Molecular Data , pp. 127-139
    • Golding, B.1
  • 20
    • 0029959336 scopus 로고    scopus 로고
    • Environmental transmission of a sulfur-oxidizing bacterial gill endosymbiont in the tropical Lucinid bivalve Codakia orbicularis
    • GROS, O., A. DARRASSE, P. DURAND, L. FRENKIEL, and M. MOUEZA. 1996. Environmental transmission of a sulfur-oxidizing bacterial gill endosymbiont in the tropical Lucinid bivalve Codakia orbicularis. Appl. Environ. Microbiol. 62: 2324-2330.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2324-2330
    • Gros, O.1    Darrasse, A.2    Durand, P.3    Frenkiel, L.4    Moueza, M.5
  • 21
    • 0001760940 scopus 로고
    • Association of bacteria with larvae of the gutless protobranch bivalve Solemya reidi (Cryptodonta: Solemyidae)
    • GUSTAFSON, R. G., and R. G. B. REID. 1988. Association of bacteria with larvae of the gutless protobranch bivalve Solemya reidi (Cryptodonta: Solemyidae). Mar. Biol. 97:389-401.
    • (1988) Mar. Biol. , vol.97 , pp. 389-401
    • Gustafson, R.G.1    Reid, R.G.B.2
  • 22
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
    • GUTELL, R. R., N. LARSEN, and C. R. WOESE. 1994. Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol. Rev. 58:10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 23
    • 0005982910 scopus 로고    scopus 로고
    • The potential role of functional differences between Rubisco forms in governing expression in chemoautotrophic symbioses
    • HAYGOOD, M. G. 1996. The potential role of functional differences between Rubisco forms in governing expression in chemoautotrophic symbioses. Limnol. Oceanogr. 41:370-371.
    • (1996) Limnol. Oceanogr. , vol.41 , pp. 370-371
    • Haygood, M.G.1
  • 24
    • 0019296687 scopus 로고
    • A simple method for estimating the evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • KJMURA, M. 1980. A simple method for estimating the evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kjmura, M.1
  • 26
    • 0031026397 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacterial symbionts of Solemya hosts based on comparative sequence analysis of 16S rRNA genes
    • KRUEGER, D. M., and C. M. CAVANAUGH. 1997. Phylogenetic diversity of bacterial symbionts of Solemya hosts based on comparative sequence analysis of 16S rRNA genes. Appl. Environ. Microbiol. 63:91-98.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 91-98
    • Krueger, D.M.1    Cavanaugh, C.M.2
  • 27
    • 0030117113 scopus 로고    scopus 로고
    • Vertical transmission of chemoautotrophic symbionts in the bivalve Solemya velum (Bivalvia: Protobranchia)
    • KRUEGER, D. M., R. G. GUSTAFSON, and C. M. CAVANAUGH. 1996. Vertical transmission of chemoautotrophic symbionts in the bivalve Solemya velum (Bivalvia: Protobranchia). Biol. Bull. 190:195-202.
    • (1996) Biol. Bull. , vol.190 , pp. 195-202
    • Krueger, D.M.1    Gustafson, R.G.2    Cavanaugh, C.M.3
  • 29
    • 0031238652 scopus 로고    scopus 로고
    • Sulfur-oxidizing symbionts have not co-evolved with their hydrothermal vent tube worm hosts: An RFLP analysis
    • LAUE, B. E., and D. C. NELSON. 1997. Sulfur-oxidizing symbionts have not co-evolved with their hydrothermal vent tube worm hosts: an RFLP analysis. Mol. Mar. Biol. Biotechnol. 6:180-188.
    • (1997) Mol. Mar. Biol. Biotechnol. , vol.6 , pp. 180-188
    • Laue, B.E.1    Nelson, D.C.2
  • 30
    • 0031588021 scopus 로고    scopus 로고
    • In vivo determination of RNA structure-function relationships: Analysis of the 790 loop in ribosomal RNA
    • LEE, K., S. VARMA, J. J. SANTALUCIA, and P. R. CUNNINGHAM. 1997. In vivo determination of RNA structure-function relationships: analysis of the 790 loop in ribosomal RNA. J. Mol. Biol. 269:732-743.
    • (1997) J. Mol. Biol. , vol.269 , pp. 732-743
    • Lee, K.1    Varma, S.2    Santalucia, J.J.3    Cunningham, P.R.4
  • 31
    • 0026486403 scopus 로고
    • Relative-rate test for nucleotide substitutions between two lineages
    • LI, P., and J. BOUSQUET. 1992. Relative-rate test for nucleotide substitutions between two lineages. Mol. Biol. Evol. 9: 1185-1189.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 1185-1189
    • Li, P.1    Bousquet, J.2
  • 32
    • 0030773008 scopus 로고    scopus 로고
    • Accelerated evolution as a consequence of transitions to mutualism
    • LUTZONI, F., and M. PAGEL. 1997. Accelerated evolution as a consequence of transitions to mutualism. Proc. Natl. Acad. Sci. USA 94:11422-11427.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 11422-11427
    • Lutzoni, F.1    Pagel, M.2
  • 33
    • 0030463085 scopus 로고    scopus 로고
    • Taxonomic relationships of Thiobacillus halophilus, T. aquaesulis, and other species of Thiobacillus, as determined using 16S rDNA sequencing
    • MCDONALD, I. R., D. P. KELLY, J. C. MURRELL, and A. P. WOOD. 1997. Taxonomic relationships of Thiobacillus halophilus, T. aquaesulis, and other species of Thiobacillus, as determined using 16S rDNA sequencing. Arch. Microbiol. 166:394-398.
    • (1997) Arch. Microbiol. , vol.166 , pp. 394-398
    • McDonald, I.R.1    Kelly, D.P.2    Murrell, J.C.3    Wood, A.P.4
  • 34
    • 0027308854 scopus 로고
    • Body size, metabolic rate, generation time, and the molecular clock
    • MARTIN, A. P., and S. R. PALUMBI. 1993. Body size, metabolic rate, generation time, and the molecular clock. Proc. Natl. Acad. Sci. USA 90:4087-4091.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 4087-4091
    • Martin, A.P.1    Palumbi, S.R.2
  • 35
    • 0030484239 scopus 로고    scopus 로고
    • Rates of molecular evolution: Phylogenetic issues and applications
    • MINDELL, D. P., and C. E. THACKER. 1996. Rates of molecular evolution: phylogenetic issues and applications. Annu. Rev. Ecol. Syst. 27:279-303.
    • (1996) Annu. Rev. Ecol. Syst. , vol.27 , pp. 279-303
    • Mindell, D.P.1    Thacker, C.E.2
  • 36
    • 0023866599 scopus 로고
    • The ribosome returns
    • MOORE, P. B. 1988. The ribosome returns. Nature 331:223-227.
    • (1988) Nature , vol.331 , pp. 223-227
    • Moore, P.B.1
  • 37
    • 0029866448 scopus 로고    scopus 로고
    • Accelerated evolution and Muller's ratchet in endosymbiotic bacteria
    • MORAN, N. A. 1996. Accelerated evolution and Muller's ratchet in endosymbiotic bacteria. Proc. Natl. Acad. Sci. USA 93:2873-2878.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 2873-2878
    • Moran, N.A.1
  • 38
    • 0026670564 scopus 로고
    • Testing for equality of evolutionary rates
    • MUSE, S. V, and B. S. WEIR. 1992. Testing for equality of evolutionary rates. Genetics 132:269-276.
    • (1992) Genetics , vol.132 , pp. 269-276
    • Muse, S.V.1    Weir, B.S.2
  • 39
    • 0029097821 scopus 로고
    • Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • MUYZER, G., A. TESKE, C. O. WIRSEN, and H. W. JANNASCH. 1995. Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164:165-172.
    • (1995) Arch. Microbiol. , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.O.3    Jannasch, H.W.4
  • 40
    • 0002391630 scopus 로고
    • Chemoautotrophic and methanotrophic endosymbiotic bacteria at deep-sea vents and seeps
    • D. M. KARL, ed. CRC Press, Boca Raton, Fla.
    • NELSON, D. C., and C. R. FISHER. 1995. Chemoautotrophic and methanotrophic endosymbiotic bacteria at deep-sea vents and seeps. Pp. 125-167 in D. M. KARL, ed. Microbiology of deep-sea hydrothermal vents. CRC Press, Boca Raton, Fla.
    • (1995) Microbiology of Deep-sea Hydrothermal Vents , pp. 125-167
    • Nelson, D.C.1    Fisher, C.R.2
  • 41
    • 0023477438 scopus 로고
    • Very slightly deleterious mutations and the molecular clock
    • OHTA, T. 1987. Very slightly deleterious mutations and the molecular clock. J. Mol. Evol. 26:1-6.
    • (1987) J. Mol. Evol. , vol.26 , pp. 1-6
    • Ohta, T.1
  • 42
    • 0027020232 scopus 로고
    • The nearly neutral theory of molecular evolution
    • _. 1992. The nearly neutral theory of molecular evolution. Annu. Rev. Ecol. Syst. 23:263-286.
    • (1992) Annu. Rev. Ecol. Syst. , vol.23 , pp. 263-286
  • 43
    • 0027957393 scopus 로고
    • Fast-DNAml: A tool for construction of phylogenetic trees from DNA sequences using maximum likelihood
    • OLSEN, G. J., H. MATSUDA, and R. HAGSTROM. 1994. fast-DNAml: a tool for construction of phylogenetic trees from DNA sequences using maximum likelihood. CABIOS 10: 41-48.
    • (1994) CABIOS , vol.10 , pp. 41-48
    • Olsen, G.J.1    Matsuda, H.2    Hagstrom, R.3
  • 44
    • 0031001691 scopus 로고    scopus 로고
    • Phylogeny and molecular fingerprinting of green sulfur bacteria
    • OVERMANN, J., and C. TUSCHAK. 1997. Phylogeny and molecular fingerprinting of green sulfur bacteria. Arch. Microbiol. 167:302-309.
    • (1997) Arch. Microbiol. , vol.167 , pp. 302-309
    • Overmann, J.1    Tuschak, C.2
  • 46
    • 0029188636 scopus 로고
    • Expression of form I and form II Rubisco in chemoautotrophic symbioses: Implications for the interpretation of stable carbon isotope values
    • ROBINSON, J. J., and C. M. CAVANAUGH. 1995. Expression of form I and form II Rubisco in chemoautotrophic symbioses: implications for the interpretation of stable carbon isotope values. Limnol. Oceanogr. 40:1496-1502.
    • (1995) Limnol. Oceanogr. , vol.40 , pp. 1496-1502
    • Robinson, J.J.1    Cavanaugh, C.M.2
  • 47
    • 0028598812 scopus 로고
    • The genetic data environment an expandable GUI for multiple sequence analysis
    • SMITH, S. W., R. OVERBEEK, C. R. WOESE, W. GILBERT, and P. M. GILLEVET. 1994. The genetic data environment an expandable GUI for multiple sequence analysis. CABIOS 10:671-675.
    • (1994) CABIOS , vol.10 , pp. 671-675
    • Smith, S.W.1    Overbeek, R.2    Woese, C.R.3    Gilbert, W.4    Gillevet, P.M.5
  • 48
    • 0029815120 scopus 로고    scopus 로고
    • Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules
    • SPRINGER, M. S., and E. DOUZERY. 1996. Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules. J. Mol. Evol. 43:357-373.
    • (1996) J. Mol. Evol. , vol.43 , pp. 357-373
    • Springer, M.S.1    Douzery, E.2
  • 50
    • 0030066830 scopus 로고
    • Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria
    • TESKE, A., N. B. RAMSING, J. KUVER, and H. FOSSING. 1995. Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria. Syst. Appl. Microbiol. 18:517-526.
    • (1995) Syst. Appl. Microbiol. , vol.18 , pp. 517-526
    • Teske, A.1    Ramsing, N.B.2    Kuver, J.3    Fossing, H.4
  • 52
    • 0027309533 scopus 로고
    • Rates and patterns of base change in the small subunit ribosomal RNA gene
    • VAWTER, L., and W. M. BROWN. 1993. Rates and patterns of base change in the small subunit ribosomal RNA gene. Genetics 134:597-608.
    • (1993) Genetics , vol.134 , pp. 597-608
    • Vawter, L.1    Brown, W.M.2
  • 53
    • 0023184331 scopus 로고
    • Bacterial evolution
    • WOESE, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51: 221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1


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