A framework for the analysis of phantom data in multicenter diffusion tensor imaging studies

Human Brain Mapping

Volumn 34, Issue 10, 2013, Pages 2439-2454

  Walker, Lindsay ^a,b   Curry, Michael ^a   Nayak, Amritha ^a,b   Lange, Nicholas ^c,d   Pierpaoli, Carlo ^a  

^a EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

^b UNIFORMED SERVICES UNIVERSITY OF THE HEALTH SCIENCES   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

^d HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

Accuracy; Diffusion tensor imaging; DTI; Multicenter; Pediatric; Reproducibility

Indexed keywords

ADULT; ANALYSIS OF VARIANCE; ARTICLE; BRAIN DEVELOPMENT; BRAIN SIZE; CHILD; DIFFUSION TENSOR IMAGING; HUMAN; INFORMATION PROCESSING; MALE; NEUROIMAGING; NORMAL HUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; PHANTOM; PRESCHOOL CHILD; PRIORITY JOURNAL;

ACCURACY; DIFFUSION TENSOR IMAGING; DTI; MULTICENTER; PEDIATRIC; REPRODUCIBILITY;

ANALYSIS OF VARIANCE; ANISOTROPY; BRAIN; CHILD; CHILD, PRESCHOOL; COMPUTER SIMULATION; DIFFUSION TENSOR IMAGING; HUMANS; MALE; MIDDLE AGED; MULTICENTER STUDIES AS TOPIC; PHANTOMS, IMAGING; REPRODUCIBILITY OF RESULTS; RESEARCH DESIGN; SOFTWARE; STATISTICS, NONPARAMETRIC;

EID: 84883753710     PISSN: 10659471     EISSN: 10970193     Source Type: Journal    
DOI: 10.1002/hbm.22081     Document Type: Article

References (39)

1. ACR (1998):Phantom Test Guidance for the ACR MRI Accreditation Program.Reston, VA:American College of Radiology.
2. Almli CR, Rivkin MJ, McKinstry RC (2007): The NIH MRI study of normal brain development (Objective-2): Newborns, infants, toddlers, and preschoolers. Neuroimage 35:308-325.
3. Andersson JL, Skare S, Ashburner J (2003): How to correct susceptibility distortions in spin-echo echo-planar images: Application to diffusion tensor imaging. Neuroimage 20:870-888.
4. Barnett V, Lewis T (1985):Outliers in Statistical Data.New York:Wiley.
5. Basser PJ, Mattiello J, LeBihan D (1994): Estimation of the effective self-diffusion tensor from the NMR spin echo. J Magn Reson B 103:247-254.
6. Beaulieu C (2002): The basis of anisotropic water diffusion in the nervous system-A technical review. NMR Biomed 15:435-455.
7. Brown GG, Mathalon DH, Stern H, Ford J, Mueller B, Greve DN, McCarthy G, Voyvodic J, Glover G, Diaz M, Yetter E, Ozyurt IB, Jorgensen KW, Wible CG, Turner JA, Thompson WK, Potkin SG (2011): Multisite reliability of cognitive BOLD data. Neuroimage 54:2163-2175.
8. Chang LC, Koay CG, Pierpaoli C, Basser PJ (2007): Variance of estimated DTI-derived parameters via first-order perturbation methods. Magn Reson Med 57:141-149.
9. Embleton KV, Haroon HA, Morris DM, Ralph MA, Parker GJ (2010): Distortion correction for diffusion-weighted MRI tractography and fMRI in the temporal lobes. Hum Brain Mapp 31:1570-1587.
10. Evans AC (2006): The NIH MRI study of normal brain development. Neuroimage 30:184-202.
11. Farrell JA, Landman BA, Jones CK, Smith SA, Prince JL, van Zijl PC, Mori S (2007): Effects of signal-to-noise ratio on the accuracy and reproducibility of diffusion tensor imaging-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5 T. J Magn Reson Imaging 26:756-767.
12. Focke NK, Helms G, Kaspar S, Diederich C, Toth V, Dechent P, Mohr A, Paulus W (2011): Multisite voxel-based morphometry-Not quite there yet. Neuroimage 56:1164-1170.
13. Friedman L, Stern H, Brown GG, Mathalon DH, Turner J, Glover GH, Gollub RL, Lauriello J, Lim KO, Cannon T, Greve DN, Bockholt HJ, Belger A, Mueller B, Doty MJ, He J, Wells W, Smyth P, Pieper S, Kim S, Kubicki M, Vangel M, Potkin SG (2008): Test-retest and between-site reliability in a multicenter fMRI study. Hum Brain Mapp 29:958-972.
14. Fu L, Fonov V, Pike B, Evans AC, Collins DL (2006): Automated analysis of multisite MRI phantom data for the NIHPD project. Med Image Comput Comput Assist Interv 9( Part 2):144-151.
15. Gouttard S, Styner M, Prastawa M, Piven J, Gerig G (2008): Assessment of reliability of multisite neuroimaging via traveling phantom study. Med Image Comput Comput Assist Interv 11( Part 2):263-270.
16. Heim S, Hahn K, Samann PG, Fahrmeir L, Auer, DP (2004): Assessing DTI data quality using bootstrap analysis. Magn Reson Med 52:582-589.
17. Irfanoglu MO, Walker L, Pierpaoli C (2010):Effect of Susceptibility Distortion and Phase Encoding Direction on Tract Consistency in Diffusion Tensor Imaging.Stockholm, Sweden:ISMRM 18th annual meeting.
18. Jenkinson M, Bannister P, Brady M, Smith S (2002): Improved optimization for the robust and accurate linear registration and motion correction of brain images. Neuroimage 17:825-841.
19. Jones DK, Basser PJ (2004): Squashing peanuts and smashing pumpkins: How noise distorts diffusion-weighted MR data. Magn Reson Med 52:979-993.
20. Jones DK, Pierpaoli C (2005):Contribution of Cardiac Pulsation to Variability of Tractography Results.Miami Beach, Florida:ISMRM 13th annual meeting.
21. Kistner E, Muller K (2004): Exact distributions of intraclass correlation and Cronbach's alpha with Gaussian data and general covariance. Psychometrika 69:459-474.
22. Koay CG, Ozarslan E, Basser PJ (2009): A signal transformational framework for breaking the noise floor and its applications in MRI. J Magn Reson 197:108-119.
23. Marenco S, Rawlings R, Rohde GK, Barnett AS, Honea RA, Pierpaoli C, Weinberger DR (2006): Regional distribution of measurement error in diffusion tensor imaging. Psychiatry Res 147:69-78.
24. Pagani E, Hirsch JG, Pouwels PJ, Horsfield MA, Perego E, Gass A, Roosendaal SD, Barkhof F, Agosta F, Rovaris M, Caputo D, Giorgio A, Palace J, Marino S, De Stefano N, Ropele S, Fazekas F, Filippi M (2010): Intercenter differences in diffusion tensor MRI acquisition. J Magn Reson Imaging 31:1458-1468.
25. Pfefferbaum A, Adalsteinsson E, Sullivan EV (2003): Replicability of diffusion tensor imaging measurements of fractional anisotropy and trace in brain. J Magn Reson Imaging 18:427-433.
26. Pierpaoli C, Basser PJ (1996): Toward a quantitative assessment of diffusion anisotropy. Magn Reson Med 36:893-906.
27. Pierpaoli C, Jezzard P, Basser PJ, Barnett A, Di Chiro G (1996): Diffusion tensor MR imaging of the human brain. Radiology 201:637-648.
28. Pierpaoli C, Marenco S, Rohde GK, Jones DK, Barnett AS (2003):Analyzing the Contribution of Cardiac Pulsation to the Variability of Quantities Derived From the Diffusion Tensor.Toronto, Ontario, Canada: ISMRM 11th annual meeting, pp70.
29. Pierpaoli C, Sarlls J, Nevo U, Basser PJ, Horkay F (2009):Polyvinylpyrrolidone (PVP) Water Solutions as Isotropic Phantoms for Diffusion MRI Studies.Honolulu, Hawaii:ISMRM 17th annual meeting, p1414.
30. Pierpaoli C, Walker L, Irfanoglu MO, Barnett AS, Chang L-C, Koay CG, Pajevic S, Rohde GK, Sarlls J, Wu M (2010):TORTOISE: An Integrated Software Package for Processing of Diffusion MRI Data.Stockholm, Sweden:ISMRM 18th annual meeting.
31. Rohde GK, Barnett AS, Basser PJ, Marenco S, Pierpaoli C (2004): Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI. Magn Reson Med 51:103-114.
32. Skare S, Andersson JL (2001): On the effects of gating in diffusion imaging of the brain using single shot EPI. Magn Reson Imaging 19:1125-1128.
33. Tofts PS, Lloyd D, Clark CA, Barker GJ, Parker GJ, McConville P, Baldock C, Pope JM (2000): Test liquids for quantitative MRI measurements of self-diffusion coefficient in vivo. Magn Reson Med 43:368-374.
34. Vollmar C, O'Muircheartaigh J, Barker GJ, Symms MR, Thompson P, Kumari V, Duncan JS, Richardson MP, Koepp MJ (2010): Identical, but not the same: Intrasite and intersite reproducibility of fractional anisotropy measures on two 3.0T scanners. Neuroimage 51:1384-1394.
35. Walker L, Chang LC, Koay CG, Sharma N, Cohen L, Verma R, Pierpaoli C (2011): Effects of physiological noise in population analysis of diffusion tensor MRI data. Neuroimage 54:1168-1177.
36. Wu M, Chang L-C, Walker L, Lemaitre H, Barnett AS, Marenco S, Pierpaoli C (2008): Comparison of EPI distortion correction methods in diffusion tensor MRI using a novel framework. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 11( Part 2):321-329.
37. Zhang H, Yushkevich PA, Gee JC (2005): Deformable registration of diffusion tensor MR images with explicit orientation optimization. Med Image Comput Comput Assist Interv 8( Part 1):172-179.
38. Zhang H, Avants BB, Yushkevich PA, Woo JH, Wang S, McCluskey LF, Elman LB, Melhem ER, Gee JC (2007): High-dimensional spatial normalization of diffusion tensor images improves the detection of white matter differences: An example study using amyotrophic lateral sclerosis. IEEE Trans Med Imaging 26:1585-1597.
39. Zhu T, Hu R, Qiu X, Taylor M, Tso Y, Yiannoutsos C, Navia B, Mori S, Ekholm S, Schifitto G, Zhong J (2011): Quantification of accuracy and precision of multicenter DTI measurements: A diffusion phantom and human brain study. Neuroimage 56:1398-1411.