-
1
-
-
85126661426
-
Life-techologies, Bechtop Ion Proton
-
Life-techologies, Bechtop Ion Proton. [http://www.lifetechnologies.com/global/en/home/about-us/news-gallery/press-releases/2012/ life-techologies-itroduces-the-bechtop-io-proto.html].
-
-
-
-
2
-
-
84872894591
-
Pacific Biosciences
-
Pacific Biosciences. [http://www.pacificbiosciences.com/].
-
-
-
-
3
-
-
13444292428
-
The EMBL Nucleotide Sequence Database
-
540052, 15608199
-
Kanz C, Aldebert P, Althorpe N, Baker W, Baldwin A, Bates K, Browne P, van den Broek A, Castro M, Cochrane ea G. The EMBL Nucleotide Sequence Database. Nucleic Acids Res 2005, 33:D29-D33. 540052, 15608199.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Kanz, C.1
Aldebert, P.2
Althorpe, N.3
Baker, W.4
Baldwin, A.5
Bates, K.6
Browne, P.7
Van Den Broek, A.8
Castro, M.9
Cochrane ea, G.10
-
4
-
-
77954526823
-
The case for cloud computing in genome informatics
-
10.1186/gb-2010-11-5-207, 2898083, 20441614
-
Stein LD. The case for cloud computing in genome informatics. Genome Biol 2010, 11:207. 10.1186/gb-2010-11-5-207, 2898083, 20441614.
-
(2010)
Genome Biol
, vol.11
, pp. 207
-
-
Stein, L.D.1
-
5
-
-
85014635816
-
Encyclopedia of DNA Elements (ENCODE) Project
-
Encyclopedia of DNA Elements (ENCODE) Project. [http://genome.ucsc.edu/ENCODE/].
-
-
-
-
6
-
-
67249161793
-
ModENCODE Project
-
modENCODE Project. [http://www.modencode.org/].
-
-
-
-
7
-
-
54549108740
-
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
-
10.1038/nature07385, 2671642, 18772890, Network TCGAR
-
Network TCGAR Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 2008, 455:1061-1068. 10.1038/nature07385, 2671642, 18772890, Network TCGAR.
-
(2008)
Nature
, vol.455
, pp. 1061-1068
-
-
-
8
-
-
46649099510
-
1000 Genomes project
-
Siva N. 1000 Genomes project. Nat Biotechnol 2008, 26:256.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 256
-
-
Siva, N.1
-
9
-
-
10244255212
-
Taverna: a tool for the composition and enactment of bioinformatics workflows
-
10.1093/bioinformatics/bth361, 15201187
-
Oinn T, Addis M, Ferris J, Marvin D, Senger M, Greenwood M, Carver T, Glover KPM, Wipat ALP. Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics 2004, 20:3045-3054. 10.1093/bioinformatics/bth361, 15201187.
-
(2004)
Bioinformatics
, vol.20
, pp. 3045-3054
-
-
Oinn, T.1
Addis, M.2
Ferris, J.3
Marvin, D.4
Senger, M.5
Greenwood, M.6
Carver, T.7
Glover, K.P.M.8
Wipat, A.L.P.9
-
10
-
-
84863289036
-
FX: an RNA-Seq analysis tool on the cloud
-
10.1093/bioinformatics/bts023, 22257667
-
Hong D, Rhie A, Park S, Lee J, Ju Y, Kim S, Yu S, Bleazard T, Park H, Rhee H, Chong H, Yang K, Lee Y, Kim I, Lee J, Kim J, Seo J. FX: an RNA-Seq analysis tool on the cloud. Bioinformatics 2012, 28:721-723. 10.1093/bioinformatics/bts023, 22257667.
-
(2012)
Bioinformatics
, vol.28
, pp. 721-723
-
-
Hong, D.1
Rhie, A.2
Park, S.3
Lee, J.4
Ju, Y.5
Kim, S.6
Yu, S.7
Bleazard, T.8
Park, H.9
Rhee, H.10
Chong, H.11
Yang, K.12
Lee, Y.13
Kim, I.14
Lee, J.15
Kim, J.16
Seo, J.17
-
11
-
-
25844449770
-
Galaxy: a platform for interactive large-scale genome analysis
-
10.1101/gr.4086505, 1240089, 16169926
-
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A. Galaxy: a platform for interactive large-scale genome analysis. Genome Res 2005, 15:1451-1455. 10.1101/gr.4086505, 1240089, 16169926.
-
(2005)
Genome Res
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
Shah, P.6
Zhang, Y.7
Blankenberg, D.8
Albert, I.9
Taylor, J.10
Miller, W.11
Kent, W.J.12
Nekrutenko, A.13
-
12
-
-
78650802666
-
SeqWare Query Engine: storing and searching sequence data in the cloud
-
3040528, 21210981
-
O'Connor B, Merriman B, Nelson S. SeqWare Query Engine: storing and searching sequence data in the cloud. BMC Bioinformatics 2010, 11:S2. 3040528, 21210981.
-
(2010)
BMC Bioinformatics
, vol.11
-
-
O'Connor, B.1
Merriman, B.2
Nelson, S.3
-
13
-
-
85126682058
-
DNAnexus
-
DNAnexus. [https://dnanexus.com/].
-
-
-
-
14
-
-
84862959378
-
BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis
-
Atalanta, GA: IEEE
-
Lee H, Yang Y, Chae H, Nam S, Choi D, Tangchaisin P, Herath C, Marru S, Nephew K, Kim S. BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis. IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2011) 2011, Atalanta, GA: IEEE.
-
(2011)
IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2011)
-
-
Lee, H.1
Yang, Y.2
Chae, H.3
Nam, S.4
Choi, D.5
Tangchaisin, P.6
Herath, C.7
Marru, S.8
Nephew, K.9
Kim, S.10
-
15
-
-
84866519569
-
BioVLAB-MMIA: A Cloud Environment for microRNA and mRNA Integrated Analysis (MMIA) on Amazon EC2
-
Lee H, Yang Y, Chae H, Nam S, Choi D, Tangchaisin P, Herath C, Marru S, Nephew K, Kim S. BioVLAB-MMIA: A Cloud Environment for microRNA and mRNA Integrated Analysis (MMIA) on Amazon EC2. IEEE Trans Nanobioscience 11 2012, 11:266-272.
-
(2012)
IEEE Trans Nanobioscience 11
, vol.11
, pp. 266-272
-
-
Lee, H.1
Yang, Y.2
Chae, H.3
Nam, S.4
Choi, D.5
Tangchaisin, P.6
Herath, C.7
Marru, S.8
Nephew, K.9
Kim, S.10
-
16
-
-
84888283233
-
XBaya: A Graphical Workflow Composer for Web Services
-
XBaya: A Graphical Workflow Composer for Web Services. [https://cwiki.apache.org/confluence/display/AIRAVATA/XBaya].
-
-
-
-
17
-
-
80052121849
-
CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing
-
10.1186/1471-2105-12-356, 3228541, 21878105, C A
-
Angiuoli S, Matalka M, Gussman A, Galens K, Vangala M, Riley D, White J, White O, Fricke W, C A CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing. BMC Bioinformatics 2011, 12:356. 10.1186/1471-2105-12-356, 3228541, 21878105, C A.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 356
-
-
Angiuoli, S.1
Matalka, M.2
Gussman, A.3
Galens, K.4
Vangala, M.5
Riley, D.6
White, J.7
White, O.8
Fricke, W.9
-
18
-
-
84858330364
-
SNP detection for massively parallel whole-genome resequencing
-
10.1186/1471-2105-13-42, 3372431, 22429538, T B
-
Krampis K, Chapman B, Tiwari B, Bicak M, Field D, Nelson K, T B SNP detection for massively parallel whole-genome resequencing. BMC Bioinformatics 2012, 13:42. 10.1186/1471-2105-13-42, 3372431, 22429538, T B.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 42
-
-
Krampis, K.1
Chapman, B.2
Tiwari, B.3
Bicak, M.4
Field, D.5
Nelson, K.6
-
19
-
-
33747817416
-
Roundup: a multi-genome repository of orthologs and evolutionary distances
-
10.1093/bioinformatics/btl286, 16777906
-
Deluca TF, Wu IH, Pu J, Monaghan T, Peshkin L, Singh S, Wall DP. Roundup: a multi-genome repository of orthologs and evolutionary distances. Bioinformatics 2006, 22:2044-2046. 10.1093/bioinformatics/btl286, 16777906.
-
(2006)
Bioinformatics
, vol.22
, pp. 2044-2046
-
-
Deluca, T.F.1
Wu, I.H.2
Pu, J.3
Monaghan, T.4
Peshkin, L.5
Singh, S.6
Wall, D.P.7
-
20
-
-
65649120715
-
Cloudburst: highly sensitive read mapping with mapreduce
-
10.1093/bioinformatics/btp236, 2682523, 19357099
-
Schatz M. Cloudburst: highly sensitive read mapping with mapreduce. Bioinformatics 2009, 25:1363-1369. 10.1093/bioinformatics/btp236, 2682523, 19357099.
-
(2009)
Bioinformatics
, vol.25
, pp. 1363-1369
-
-
Schatz, M.1
-
21
-
-
72849149423
-
Searching for SNPs with cloud computing
-
Langmead B, Schatz M, Lin J, Pop M, Salzberg S. Searching for SNPs with cloud computing. Genome Biol 2009, 11:R134.
-
(2009)
Genome Biol
, vol.11
-
-
Langmead, B.1
Schatz, M.2
Lin, J.3
Pop, M.4
Salzberg, S.5
-
23
-
-
85126662107
-
Hadoop
-
Hadoop. [http://hadoop.apache.org/].
-
-
-
-
24
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-212, 2690991, 19344490
-
Langmead B, Trapnel L, Pop M, Salzberg S. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10(3):212. 10.1186/gb-2009-10-3-212, 2690991, 19344490.
-
(2009)
Genome Biol
, vol.10
, Issue.3
, pp. 212
-
-
Langmead, B.1
Trapnel, L.2
Pop, M.3
Salzberg, S.4
-
25
-
-
66449114324
-
SNP detection for massively parallel whole-genome resequencing
-
10.1101/gr.088013.108, 2694485, 19420381
-
Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K. SNP detection for massively parallel whole-genome resequencing. Genome Res 2009, 19:1124-1132. 10.1101/gr.088013.108, 2694485, 19420381.
-
(2009)
Genome Res
, vol.19
, pp. 1124-1132
-
-
Li, R.1
Li, Y.2
Fang, X.3
Yang, H.4
Wang, J.5
Kristiansen, K.6
-
26
-
-
84870480091
-
Amazon Elastic MapReduce (Amazon EMR)
-
Amazon Elastic MapReduce (Amazon EMR). [http://aws.amazon.com/elasticmapreduce/].
-
-
-
-
27
-
-
79954517240
-
ECEO : an efficient Cloud Epistasis cOmputing model in genome-wide association study
-
10.1093/bioinformatics/btr091, 21367868
-
Wang Z, Wang Y, Tan K, Wong L, Agrawal D. eCEO : an efficient Cloud Epistasis cOmputing model in genome-wide association study. Bioinformatics 2011, 27:1045-1051. 10.1093/bioinformatics/btr091, 21367868.
-
(2011)
Bioinformatics
, vol.27
, pp. 1045-1051
-
-
Wang, Z.1
Wang, Y.2
Tan, K.3
Wong, L.4
Agrawal, D.5
-
28
-
-
80052327095
-
Transitioning BioVLab cloud workbench to a science gateway
-
Salt Lake City, UT: ACM 40:1-40:2
-
Marru S, Chae H, Tangchaisin P, Kim S, Pierce M, Nephew K. Transitioning BioVLab cloud workbench to a science gateway. Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery 2011, 40:1-40:2. Salt Lake City, UT: ACM, [http://doi.acm.org/10.1145/2016741.2016784].
-
(2011)
Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery
-
-
Marru, S.1
Chae, H.2
Tangchaisin, P.3
Kim, S.4
Pierce, M.5
Nephew, K.6
-
29
-
-
67849101186
-
MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression
-
10.1093/nar/gkp294, 2703907, 19420067
-
Nam S, Li M, Choi K, Balch C, Kim S, Nephew K. MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression. Nucleic Acids Res 2009, 37:W356-W362. 10.1093/nar/gkp294, 2703907, 19420067.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Nam, S.1
Li, M.2
Choi, K.3
Balch, C.4
Kim, S.5
Nephew, K.6
-
30
-
-
85126668428
-
BioVLAB-mCpG
-
BioVLAB-mCpG. [http://biohealth.snu.ac.kr/mcpg-snp-express/].
-
-
-
-
31
-
-
85126727063
-
SAM (Sequence Alignment/Map) tools
-
SAM (Sequence Alignment/Map) tools. [http://samtools.sourceforge.net/].
-
-
-
-
32
-
-
53849146020
-
Model-based Analysis of ChIP-Seq (MACS)
-
10.1186/gb-2008-9-9-r137, 2592715, 18798982
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based Analysis of ChIP-Seq (MACS). Genome Biol 2008, 9:R137. 10.1186/gb-2008-9-9-r137, 2592715, 18798982.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
33
-
-
84871359043
-
Bioconductor: Open Source Software for Bioinformatics
-
Bioconductor: Open Source Software for Bioinformatics. [http://www.bioconductor.org/].
-
-
-
-
34
-
-
84895115809
-
Large-Scale Privacy-Preserving Mappings of Human Genomic Sequences on Hybrid Clouds
-
San Diego, CA: Internet Society
-
Chen Y, Peng B, Wang X, Tang H. Large-Scale Privacy-Preserving Mappings of Human Genomic Sequences on Hybrid Clouds. Proceedings of the 19th Annual Network and Distributed System Security Symposium (NDSS) 2012, San Diego, CA: Internet Society.
-
(2012)
Proceedings of the 19th Annual Network and Distributed System Security Symposium (NDSS)
-
-
Chen, Y.1
Peng, B.2
Wang, X.3
Tang, H.4
|