메뉴 건너뛰기




Volumn , Issue , 2011, Pages 494-499

BioVLAB-MMIA: A reconfigurable cloud computing environment for microRNA and mRNA integrated analysis

Author keywords

Cloud computing; microRNAs; mRNAs; Scientific workflows

Indexed keywords

ACTIVE AREA; AMAZON EC2; COMPUTATIONAL TOOLS; COMPUTING ENVIRONMENTS; COMPUTING INFRASTRUCTURES; COMPUTING RESOURCE; DATA SETS; DEVELOPMENTAL BIOLOGY; EXPRESSION PROFILE; GENE EXPRESSION PROFILES; INFORMATICS; INTEGRATED ANALYSIS; INTEGRATION ANALYSIS; LARGE DATASETS; LIFE SCIENCE RESEARCH; MICRORNAS; MRNA EXPRESSION; MRNAS; RE-CONFIGURABLE; SCIENTIFIC WORKFLOWS; TARGET GENES; WORK-FLOWS;

EID: 84862959378     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBM.2011.93     Document Type: Conference Paper
Times cited : (5)

References (37)
  • 1
    • 58249088751 scopus 로고    scopus 로고
    • Micrornas: Target recognition and regulatory functions
    • D. Bartel, "Micrornas: Target recognition and regulatory functions," Cell, vol. 136, no. 2, pp. 215-233, 2009.
    • (2009) Cell , vol.136 , Issue.2 , pp. 215-233
    • Bartel, D.1
  • 2
    • 79960104144 scopus 로고    scopus 로고
    • Micrornas in development and disease
    • D. Sayed and M. Abdellatif, "Micrornas in development and disease," Clinical Genetics, vol. 91, no. 3, pp. 827-887, 2011.
    • (2011) Clinical Genetics , vol.91 , Issue.3 , pp. 827-887
    • Sayed, D.1    Abdellatif, M.2
  • 3
    • 70349320158 scopus 로고    scopus 로고
    • Causes and consequences of microrna dysregulation in cancer
    • C. M. Croce, "Causes and consequences of microrna dysregulation in cancer," Nature Reviews Genetics, vol. 10, no. 10, pp. 704-714, 2009.
    • (2009) Nature Reviews Genetics , vol.10 , Issue.10 , pp. 704-714
    • Croce, C.M.1
  • 4
    • 67849101186 scopus 로고    scopus 로고
    • Microrna and mrna integrated analysis (mmia): A web tool for examining biological functions of microrna expression
    • S. Nam, M. Li, K. Choi, C. Balch, S. Kim, and K. P. Nephew, "Microrna and mrna integrated analysis (mmia): a web tool for examining biological functions of microrna expression,"Nucleic Acids Research, 2009.
    • (2009) Nucleic Acids Research
    • Nam, S.1    Li, M.2    Choi, K.3    Balch, C.4    Kim, S.5    Nephew, K.P.6
  • 7
    • 62749161141 scopus 로고    scopus 로고
    • Biovlab-microarray: Microarray data analysis in virtual environment
    • Ieee
    • Y. Yang, J. Y. Choi, K. Choi, M. Pierce, D. Gannon, and S. Kim, "Biovlab-microarray: Microarray data analysis in virtual environment," in Proc IEEE E-science. Ieee, 2008, pp. 159-165.
    • (2008) Proc IEEE E-science , pp. 159-165
    • Yang, Y.1    Choi, J.Y.2    Choi, K.3    Pierce, M.4    Gannon, D.5    Kim, S.6
  • 8
    • 84910662186 scopus 로고    scopus 로고
    • A. S. Foundation, pp. -. [Online]. Available
    • A. S. Foundation, "Apache ode," pp. -. [Online]. Available: http://ode.apache.org/
    • Apache Ode
  • 15
  • 16
    • 77957936026 scopus 로고    scopus 로고
    • [Online]. Available
    • "Google app engine." [Online]. Available: http://code.google. com/appengine/
    • Google App Engine
  • 17
    • 84870639734 scopus 로고    scopus 로고
    • [Online]. Available
    • "Microsoft azure." [Online]. Available: http://www.microsoft. com/azure
    • Microsoft Azure
  • 18
    • 65649120715 scopus 로고    scopus 로고
    • Cloudburst: Highly sensitive read mapping with mapreduce
    • M. C. Schatz, "Cloudburst: highly sensitive read mapping with mapreduce," Bioinformatics, vol. 25, no. 11, pp. 1363-1369, 2009.
    • (2009) Bioinformatics , vol.25 , Issue.11 , pp. 1363-1369
    • Schatz, M.C.1
  • 22
    • 84862955637 scopus 로고    scopus 로고
    • [Online]. Available
    • "Bionimbus." [Online]. Available: http://www.bionimbus.org/
    • Bionimbus
  • 23
    • 77954526823 scopus 로고    scopus 로고
    • The case for cloud computing in genome informatics
    • L. Stein, "The case for cloud computing in genome informatics,"Genome Biology, vol. 11, no. 5, p. 207, 2010.
    • (2010) Genome Biology , vol.11 , Issue.5 , pp. 207
    • Stein, L.1
  • 24
    • 77954492012 scopus 로고    scopus 로고
    • Cloud computing and the dna data race
    • M. C. Schatz, B. Langmead, and S. L. Salzberg, "Cloud computing and the dna data race," Nature Biotechnology, vol. 28, no. 7, pp. 691-693, 2010.
    • (2010) Nature Biotechnology , vol.28 , Issue.7 , pp. 691-693
    • Schatz, M.C.1    Langmead, B.2    Salzberg, S.L.3
  • 26
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of post-transcriptional regulation by micrornas: Are the answers in sight?
    • W. Filipowicz, S. N. Bhattacharyya, and N. Sonenberg, "Mechanisms of post-transcriptional regulation by micrornas: are the answers in sight?" Nature Reviews Genetics, vol. 9, pp. 102-114, 2008.
    • (2008) Nature Reviews Genetics , vol.9 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 27
    • 58149179989 scopus 로고    scopus 로고
    • mir2disease: A manually curated database for microrna deregulation in human disease
    • Q. Jiang, Y. Wang, Y. Hao, L. Juan, M. Teng, X. Zhang, M. Li, G. Wang, and Y. Liu, "mir2disease: a manually curated database for microrna deregulation in human disease," Nucleic Acids Research, vol. 37, no. suppl 1, pp. D98-D104, 2009.
    • (2009) Nucleic Acids Research , vol.37 , Issue.SUPPL. 1
    • Jiang, Q.1    Wang, Y.2    Hao, Y.3    Juan, L.4    Teng, M.5    Zhang, X.6    Li, M.7    Wang, G.8    Liu, Y.9
  • 29
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microrna targets
    • B. P. Lewis, C. B. Burge, and D. P. Bartel, "Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microrna targets." Cell, vol. 120, pp. 15-20, 2005.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 30
    • 34748821761 scopus 로고    scopus 로고
    • The role of site accessibility in microRNA target recognition
    • DOI 10.1038/ng2135, PII NG2135
    • M. Kertesz, N. Iovino, U. Unnerstall, U. Gaul, and E. Segal, "The role of site accessibility in microrna target recognition,"Nature Genetics, vol. 39, pp. 1278-1284, 2007. (Pubitemid 47482690)
    • (2007) Nature Genetics , vol.39 , Issue.10 , pp. 1278-1284
    • Kertesz, M.1    Iovino, N.2    Unnerstall, U.3    Gaul, U.4    Segal, E.5
  • 34
    • 34547601280 scopus 로고    scopus 로고
    • Update of the g2d tool for prioritization of gene candidates to inherited diseases
    • C. Perez-Iratxeta, P. Bork, and M. A. Andrade-Navarro, "Update of the g2d tool for prioritization of gene candidates to inherited diseases," Nucleic Acids Research, pp. W212-W216, 2007.
    • (2007) Nucleic Acids Research
    • Perez-Iratxeta, C.1    Bork, P.2    Andrade-Navarro, M.A.3
  • 35
    • 33846207899 scopus 로고    scopus 로고
    • Diverse gene expression and dna methylation profiles correlate with differential adaptation of breast cancer cells to the antiestrogens tamoxifen and fulvestrant
    • M. Fan, P. S. Yan, C. Hartman-Frey, L. Chen, H. Paik, S. L. Oyer, J. D. Salisbury, A. S. Cheng, L. Li, P. H. Abbosh, T. H.-M. Huang, and K. P. Nephew, "Diverse gene expression and dna methylation profiles correlate with differential adaptation of breast cancer cells to the antiestrogens tamoxifen and fulvestrant," Cancer Research, vol. 66, no. 24, pp. 11 954-11 966, 2006.
    • (2006) Cancer Research , vol.66 , Issue.24 , pp. 11954-11966
    • Fan, M.1    Yan, P.S.2    Hartman-Frey, C.3    Chen, L.4    Paik, H.5    Oyer, S.L.6    Salisbury, J.D.7    Cheng, A.S.8    Li, L.9    Abbosh, P.H.10    Huang, T.H.-M.11    Nephew, K.P.12
  • 36
    • 84862952882 scopus 로고    scopus 로고
    • [Online]. Available
    • "Mmia." [Online]. Available: http://cancer.informatics.indiana. edu/mmia
    • Mmia
  • 37
    • 60149084355 scopus 로고    scopus 로고
    • Computational analysis of microrna profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance
    • F. Xin, M. Li, C. Balch, M. Thomson, M. Fan, Y. Liu, S. M. Hammond, S. Kim, and K. P. Nephew, "Computational analysis of microrna profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance,"Bioinformatics, vol. 25, no. 4, pp. 430-434, 2009.
    • (2009) Bioinformatics , vol.25 , Issue.4 , pp. 430-434
    • Xin, F.1    Li, M.2    Balch, C.3    Thomson, M.4    Fan, M.5    Liu, Y.6    Hammond, S.M.7    Kim, S.8    Nephew, K.P.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.