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Volumn 117, Issue 35, 2013, Pages 10261-10270

On the thermodynamics and kinetics of hydrophobic interactions at interfaces

Author keywords

[No Author keywords available]

Indexed keywords

DESOLVATION BARRIERS; HYDROPHILIC SURFACES; HYDROPHOBIC INTERACTIONS; HYDROPHOBIC SURFACES; INTERFACE DEFORMATION; LIQUID-VAPOR INTERFACE; POTENTIAL OF MEAN FORCE; THERMODYNAMICS AND KINETICS;

EID: 84883723171     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp4050513     Document Type: Article
Times cited : (39)

References (51)
  • 3
    • 26944481188 scopus 로고    scopus 로고
    • Interfaces and the Driving Force of Hydrophobic Assembly
    • Chandler, D. Interfaces and the Driving Force of Hydrophobic Assembly Nature 2005, 437, 640-647
    • (2005) Nature , vol.437 , pp. 640-647
    • Chandler, D.1
  • 4
    • 36749120002 scopus 로고
    • Theory of Hydrophobic Effect
    • Pratt, L. R.; Chandler, D. Theory of Hydrophobic Effect J. Chem. Phys. 1977, 67, 3683-3704
    • (1977) J. Chem. Phys. , vol.67 , pp. 3683-3704
    • Pratt, L.R.1    Chandler, D.2
  • 5
    • 0001153179 scopus 로고
    • Hydrophobic Hydration around a Pair of Apolar Species in Water
    • Pangali, C.; Rao, M.; Berne, B. J. Hydrophobic Hydration around a Pair of Apolar Species in Water J. Chem. Phys. 1979, 71, 2982-2990
    • (1979) J. Chem. Phys. , vol.71 , pp. 2982-2990
    • Pangali, C.1    Rao, M.2    Berne, B.J.3
  • 6
    • 0031052147 scopus 로고    scopus 로고
    • A Desolvation Barrier to Hydrophobic Cluster Formation may Contribute to the Rate-Limiting Step in Protein Folding
    • Rank, J. A.; Baker, D. A Desolvation Barrier to Hydrophobic Cluster Formation may Contribute to the Rate-Limiting Step in Protein Folding Protein Sci. 1997, 6, 347-354
    • (1997) Protein Sci. , vol.6 , pp. 347-354
    • Rank, J.A.1    Baker, D.2
  • 9
    • 0000808384 scopus 로고    scopus 로고
    • Pathway to Surface-Induced Phase Transition of a Confined Fluid
    • Lum, K.; Luzar, A. Pathway to Surface-Induced Phase Transition of a Confined Fluid Phys. Rev. E 1997, 56, R6283-R6286
    • (1997) Phys. Rev. e , vol.56
    • Lum, K.1    Luzar, A.2
  • 10
    • 0034321137 scopus 로고    scopus 로고
    • Transition Path Sampling of Cavitation between Molecular Scale Solvophobic Surfaces
    • Bolhuis, P. G.; Chandler, D. Transition Path Sampling of Cavitation Between Molecular Scale Solvophobic Surfaces J. Chem. Phys. 2000, 113, 8154-8160
    • (2000) J. Chem. Phys. , vol.113 , pp. 8154-8160
    • Bolhuis, P.G.1    Chandler, D.2
  • 12
    • 0042838377 scopus 로고    scopus 로고
    • Osmotic Water Transport Through Carbon Nanotube Membranes
    • Kalra, A.; Garde, S.; Hummer, G. Osmotic Water Transport Through Carbon Nanotube Membranes Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 10175-10180
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 10175-10180
    • Kalra, A.1    Garde, S.2    Hummer, G.3
  • 13
    • 0011960339 scopus 로고    scopus 로고
    • Hydrophobicity at Small and Large Length Scales
    • Lum, K.; Chandler, D.; Weeks, J. D. Hydrophobicity at Small and Large Length Scales J. Phys. Chem. B 1999, 103, 4570-4577
    • (1999) J. Phys. Chem. B , vol.103 , pp. 4570-4577
    • Lum, K.1    Chandler, D.2    Weeks, J.D.3
  • 14
    • 67449084506 scopus 로고    scopus 로고
    • Dewetting and Hydrophobic Interaction in Physical and Biological Systems
    • Berne, B. J.; Weeks, J. D.; Zhou, R. Dewetting and Hydrophobic Interaction in Physical and Biological Systems Annu. Rev. Phys. Chem. 2009, 60, 85-103
    • (2009) Annu. Rev. Phys. Chem. , vol.60 , pp. 85-103
    • Berne, B.J.1    Weeks, J.D.2    Zhou, R.3
  • 15
    • 77955225308 scopus 로고    scopus 로고
    • Interfacial Thermodynamics of Confined Water near Molecularly Rough Surfaces
    • Mittal, J.; Hummer, G. Interfacial Thermodynamics of Confined Water near Molecularly Rough Surfaces Faraday Discuss. 2010, 146, 341-352
    • (2010) Faraday Discuss. , vol.146 , pp. 341-352
    • Mittal, J.1    Hummer, G.2
  • 16
    • 65249148461 scopus 로고    scopus 로고
    • Hydrophobic Interactions and Dewetting between Plates with Hydrophobic and Hydrophilic Domains
    • Hua, L.; Zangi, R.; Berne, B. J. Hydrophobic Interactions and Dewetting between Plates with Hydrophobic and Hydrophilic Domains J. Phys. Chem. C 2009, 113, 5244-5253
    • (2009) J. Phys. Chem. C , vol.113 , pp. 5244-5253
    • Hua, L.1    Zangi, R.2    Berne, B.J.3
  • 17
    • 70350091577 scopus 로고    scopus 로고
    • Effect of Temperature on the Structure and Phase Behavior of Water Confined by Hydrophobic, Hydrophilic, and Heterogeneous Surfaces
    • Giovambattista, N.; Rossky, P. J.; Debenedetti, P. G. Effect of Temperature on the Structure and Phase Behavior of Water Confined by Hydrophobic, Hydrophilic, and Heterogeneous Surfaces J. Phys. Chem. B 2009, 113, 13723-13734
    • (2009) J. Phys. Chem. B , vol.113 , pp. 13723-13734
    • Giovambattista, N.1    Rossky, P.J.2    Debenedetti, P.G.3
  • 18
    • 84859885229 scopus 로고    scopus 로고
    • Computational Studies of Pressure, Temperature, and Surface Effects on the Structure and Thermodynamics of Confined Water
    • Giovambattista, N.; Rossky, P. J.; Debenedetti, P. G. Computational Studies of Pressure, Temperature, and Surface Effects on the Structure and Thermodynamics of Confined Water Annu. Rev. Phys. Chem. 2012, 63, 179-200
    • (2012) Annu. Rev. Phys. Chem. , vol.63 , pp. 179-200
    • Giovambattista, N.1    Rossky, P.J.2    Debenedetti, P.G.3
  • 19
    • 68849115938 scopus 로고    scopus 로고
    • Quantifying Water Density Fluctuations and Compressibility of Hydration Shells of Hydrophobic Solutes and Proteins
    • Sarupria, S.; Garde, S. Quantifying Water Density Fluctuations and Compressibility of Hydration Shells of Hydrophobic Solutes and Proteins. Phys. Rev. Lett. 2009, 103.
    • (2009) Phys. Rev. Lett. , vol.103
    • Sarupria, S.1    Garde, S.2
  • 20
    • 70349339280 scopus 로고    scopus 로고
    • Characterizing Hydrophobicity of Interfaces by Using Cavity Formation, Solute Binding, and Water Correlations
    • Godawat, R.; Jamadagni, S. N.; Garde, S. Characterizing Hydrophobicity of Interfaces by Using Cavity Formation, Solute Binding, and Water Correlations Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 15119-15124
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 15119-15124
    • Godawat, R.1    Jamadagni, S.N.2    Garde, S.3
  • 21
    • 77955179167 scopus 로고    scopus 로고
    • Mapping Hydrophobicity at the Nanoscale: Applications to Heterogeneous Surfaces and Proteins
    • Acharya, H.; Vembanur, S.; Jamadagni, S. N.; Garde, S. Mapping Hydrophobicity at the Nanoscale: Applications to Heterogeneous Surfaces and Proteins Faraday Discuss. 2010, 146, 353-365
    • (2010) Faraday Discuss. , vol.146 , pp. 353-365
    • Acharya, H.1    Vembanur, S.2    Jamadagni, S.N.3    Garde, S.4
  • 22
    • 33645824972 scopus 로고    scopus 로고
    • Effect of Pressure on the Phase Behavior and Structure of Water Confined between Nanoscale Hydrophobic and Hydrophilic Plates
    • Giovambattista, N.; Rossky, P. J.; Debenedetti, P. G. Effect of Pressure on the Phase Behavior and Structure of Water Confined between Nanoscale Hydrophobic and Hydrophilic Plates. Phys. Rev. E 2006, 73.
    • (2006) Phys. Rev. e , vol.73
    • Giovambattista, N.1    Rossky, P.J.2    Debenedetti, P.G.3
  • 23
    • 84857761874 scopus 로고    scopus 로고
    • Sitting at the Edge: How Biomolecules Use Hydrophobicity to Tune Their Interactions and Function
    • Patel, A. J.; Varilly, P.; Jamadagni, S. N.; Hagan, M. F.; Chandler, D.; Garde, S. Sitting at the Edge: How Biomolecules Use Hydrophobicity to Tune Their Interactions and Function J. Phys. Chem. B 2012, 116, 2498-2503
    • (2012) J. Phys. Chem. B , vol.116 , pp. 2498-2503
    • Patel, A.J.1    Varilly, P.2    Jamadagni, S.N.3    Hagan, M.F.4    Chandler, D.5    Garde, S.6
  • 24
    • 0032522286 scopus 로고    scopus 로고
    • Effect of Surface Wettability on the Adsorption of Proteins and Detergents
    • Sigal, G. B.; Mrksich, M.; Whitesides, G. M. Effect of Surface Wettability on the Adsorption of Proteins and Detergents J. Am. Chem. Soc. 1998, 120, 3464-3473
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 3464-3473
    • Sigal, G.B.1    Mrksich, M.2    Whitesides, G.M.3
  • 27
    • 33845554689 scopus 로고
    • Potential-Distribution Theory and the Statistical Mechanics of Fluids
    • Widom, B. Potential-Distribution Theory and the Statistical Mechanics of Fluids J. Phys. Chem. 1982, 86, 869-872
    • (1982) J. Phys. Chem. , vol.86 , pp. 869-872
    • Widom, B.1
  • 28
    • 5244304444 scopus 로고
    • Efficient Estimation of Free Energy Differences from Monte Carlo Data
    • Bennett, C. Efficient Estimation of Free Energy Differences from Monte Carlo Data J. Comput. Phys. 1976, 22, 245-268
    • (1976) J. Comput. Phys. , vol.22 , pp. 245-268
    • Bennett, C.1
  • 30
    • 0037067120 scopus 로고    scopus 로고
    • Peptide Loop-Closure Kinetics from Microsecond Molecular Dynamics Simulations in Explicit Solvent
    • Yeh, I. C.; Hummer, G. Peptide Loop-Closure Kinetics from Microsecond Molecular Dynamics Simulations in Explicit Solvent J. Am. Chem. Soc. 2002, 124, 6563-6568
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 6563-6568
    • Yeh, I.C.1    Hummer, G.2
  • 33
    • 0037040051 scopus 로고    scopus 로고
    • Enthalpy and Entropy Contributions to the Pressure Dependence of Hydrophobic Interactions
    • Ghosh, T.; Garcia, A. E.; Garde, S. Enthalpy and Entropy Contributions to the Pressure Dependence of Hydrophobic Interactions J. Chem. Phys. 2002, 116, 2480-2486
    • (2002) J. Chem. Phys. , vol.116 , pp. 2480-2486
    • Ghosh, T.1    Garcia, A.E.2    Garde, S.3
  • 34
    • 33750077790 scopus 로고    scopus 로고
    • Hydrophobic and Ionic Interactions in Nanosized Water Droplets
    • Vaitheeswaran, S.; Thirumalai, D. Hydrophobic and Ionic Interactions in Nanosized Water Droplets J. Am. Chem. Soc. 2006, 128, 13490-13496
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 13490-13496
    • Vaitheeswaran, S.1    Thirumalai, D.2
  • 35
    • 62249083248 scopus 로고    scopus 로고
    • Water-Mediated Interactions between Hydrophobic and Ionic Species in Cylindrical Nanopores
    • Vaitheeswaran, S.; Reddy, G.; Thirumalai, D. Water-Mediated Interactions Between Hydrophobic and Ionic Species in Cylindrical Nanopores. J. Chem. Phys. 2009, 130.
    • (2009) J. Chem. Phys. , vol.130
    • Vaitheeswaran, S.1    Reddy, G.2    Thirumalai, D.3
  • 36
    • 70349309310 scopus 로고    scopus 로고
    • How Surface Wettabitity Affects the Binding, Folding, and Dynamics of Hydrophobic Polymers at Interfaces
    • Jamadagni, S. N.; Godawat, R.; Garde, S. How Surface Wettabitity Affects the Binding, Folding, and Dynamics of Hydrophobic Polymers at Interfaces Langmuir 2009, 25, 13092-13099
    • (2009) Langmuir , vol.25 , pp. 13092-13099
    • Jamadagni, S.N.1    Godawat, R.2    Garde, S.3
  • 37
    • 75749108542 scopus 로고    scopus 로고
    • Fluctuations of Water near Extended Hydrophobic and Hydrophilic Surfaces
    • Patel, A. J.; Varilly, P.; Chandler, D. Fluctuations of Water near Extended Hydrophobic and Hydrophilic Surfaces J. Phys. Chem. B 2010, 114, 1632-1637
    • (2010) J. Phys. Chem. B , vol.114 , pp. 1632-1637
    • Patel, A.J.1    Varilly, P.2    Chandler, D.3
  • 38
    • 79959486658 scopus 로고    scopus 로고
    • Hydrophobicity of Proteins and Interfaces: Insights from Density Fluctuations
    • Jamadagni, S. N.; Godawat, R.; Garde, S. Hydrophobicity of Proteins and Interfaces: Insights from Density Fluctuations Annu. Rev. Chem. Biomol. Eng. 2011, 2, 147-171
    • (2011) Annu. Rev. Chem. Biomol. Eng. , vol.2 , pp. 147-171
    • Jamadagni, S.N.1    Godawat, R.2    Garde, S.3
  • 39
    • 0009150541 scopus 로고
    • Entropy of Hydrophobic Hydration: A New Statistical Mechanical Formulation
    • Lazaridis, T.; Paulaitis, M. E. Entropy of Hydrophobic Hydration: A New Statistical Mechanical Formulation J. Phys. Chem. 1992, 96, 3847-3855
    • (1992) J. Phys. Chem. , vol.96 , pp. 3847-3855
    • Lazaridis, T.1    Paulaitis, M.E.2
  • 40
    • 0001571064 scopus 로고    scopus 로고
    • Origin of Entropy Convergence in Hydrophobic Hydration and Protein Folding
    • Garde, S.; Hummer, G.; Garcia, A. E.; Paulaitis, M. E.; Pratt, L. R. Origin of Entropy Convergence in Hydrophobic Hydration and Protein Folding Phys. Rev. Lett. 1996, 77, 4966-4968
    • (1996) Phys. Rev. Lett. , vol.77 , pp. 4966-4968
    • Garde, S.1    Hummer, G.2    Garcia, A.E.3    Paulaitis, M.E.4    Pratt, L.R.5
  • 41
    • 44949178407 scopus 로고    scopus 로고
    • Coarse Master Equations for Peptide Folding Dynamics
    • Buchete, N.; Hummer, G. Coarse Master Equations for Peptide Folding Dynamics J. Phys. Chem. B 2008, 112, 6057-6069
    • (2008) J. Phys. Chem. B , vol.112 , pp. 6057-6069
    • Buchete, N.1    Hummer, G.2
  • 42
    • 65249175791 scopus 로고    scopus 로고
    • How Interfaces Affect Hydrophobically Driven Polymer Folding
    • Jamadagni, S. N.; Godawat, R.; Dordick, J.; Garde, S. How Interfaces Affect Hydrophobically Driven Polymer Folding J. Phys. Chem. B 2009, 113, 4093-4101
    • (2009) J. Phys. Chem. B , vol.113 , pp. 4093-4101
    • Jamadagni, S.N.1    Godawat, R.2    Dordick, J.3    Garde, S.4
  • 43
    • 33644886316 scopus 로고    scopus 로고
    • Dynamics of Water Confined in the Interdomain Region of a Multidomain Protein
    • Hua, L.; Huang, X. H.; Zhou, R. H.; Berne, B. J. Dynamics of Water Confined in the Interdomain Region of a Multidomain Protein J. Phys. Chem. B 2006, 110, 3704-3711
    • (2006) J. Phys. Chem. B , vol.110 , pp. 3704-3711
    • Hua, L.1    Huang, X.H.2    Zhou, R.H.3    Berne, B.J.4
  • 44
    • 44949104127 scopus 로고    scopus 로고
    • The Role of Solvent Fluctuations in Hydrophobic Assembly
    • Willard, A. P.; Chandler, D. The Role of Solvent Fluctuations in Hydrophobic Assembly J. Phys. Chem. B 2008, 112, 6187-6192
    • (2008) J. Phys. Chem. B , vol.112 , pp. 6187-6192
    • Willard, A.P.1    Chandler, D.2
  • 45
    • 0001374686 scopus 로고    scopus 로고
    • Kinetic Pathways of Ion Pair Dissociation in Water
    • Geissler, P. L.; Dellago, C.; Chandler, D. Kinetic Pathways of Ion Pair Dissociation in Water J. Phys. Chem. B 1999, 103, 3706-3710
    • (1999) J. Phys. Chem. B , vol.103 , pp. 3706-3710
    • Geissler, P.L.1    Dellago, C.2    Chandler, D.3
  • 46
    • 0034691198 scopus 로고    scopus 로고
    • Measuring the Rate of Intramolecular Contact Formation in Polypeptides
    • Lapidus, L. J.; Eaton, W. A.; Hofrichter, J. Measuring the Rate of Intramolecular Contact Formation in Polypeptides Proc. Natl. Acad. Sci. U. S. A. 2000, 97, 7220-7225
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 7220-7225
    • Lapidus, L.J.1    Eaton, W.A.2    Hofrichter, J.3
  • 47
    • 84868526750 scopus 로고    scopus 로고
    • Free Energy Barriers to Evaporation of Water in Hydrophobic Confinement
    • Sharma, S.; Debenedetti, P. G. Free Energy Barriers to Evaporation of Water in Hydrophobic Confinement J. Phys. Chem. B 2012, 116, 13282-13289
    • (2012) J. Phys. Chem. B , vol.116 , pp. 13282-13289
    • Sharma, S.1    Debenedetti, P.G.2
  • 48
    • 84866597924 scopus 로고    scopus 로고
    • Are Hydrodynamic Interactions Important in the Kinetics of Hydrophobic Collapse?
    • Li, J.; Morrone, J. A.; Berne, B. J. Are Hydrodynamic Interactions Important in the Kinetics of Hydrophobic Collapse? J. Phys. Chem. B 2012, 116, 11537-11544
    • (2012) J. Phys. Chem. B , vol.116 , pp. 11537-11544
    • Li, J.1    Morrone, J.A.2    Berne, B.J.3
  • 49
    • 78650750083 scopus 로고    scopus 로고
    • Dry Amyloid Fibril Assembly in a Yeast Prion Peptide is Mediated by Long-Lived Structures Containing Water Wires
    • Reddy, G.; Straub, J. E.; Thirumalai, D. Dry Amyloid Fibril Assembly in a Yeast Prion Peptide is Mediated by Long-Lived Structures Containing Water Wires Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 21459-21464
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 21459-21464
    • Reddy, G.1    Straub, J.E.2    Thirumalai, D.3
  • 50
    • 77954637757 scopus 로고    scopus 로고
    • In Vitro Formation of Amyloid from α-Synuclein is Dominated by Reactions at Hydrophobic Interfaces
    • Pronchik, J.; He, X. L.; Giurleo, J. T.; Talaga, D. S. In Vitro Formation of Amyloid from α-Synuclein is Dominated by Reactions at Hydrophobic Interfaces J. Am. Chem. Soc. 2010, 132, 9797-9803
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 9797-9803
    • Pronchik, J.1    He, X.L.2    Giurleo, J.T.3    Talaga, D.S.4


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