-
4
-
-
0029151245
-
First principles calculation of the folding free energy of a three-helix bundle protein
-
Brooks CL, Boczko EM. 1995. First principles calculation of the folding free energy of a three-helix bundle protein. Science 269:393-396.
-
(1995)
Science
, vol.269
, pp. 393-396
-
-
Brooks, C.L.1
Boczko, E.M.2
-
5
-
-
0000538815
-
Analytical molecular surface calculation
-
Connolly ML. 1983. Analytical molecular surface calculation. J Appl Crystallogr 16:548-558.
-
(1983)
J Appl Crystallogr
, vol.16
, pp. 548-558
-
-
Connolly, M.L.1
-
6
-
-
0027219504
-
Protein unfolding pathways explored through molecular dynamics simulations
-
Daggett V, Levitt M. 1993. Protein unfolding pathways explored through molecular dynamics simulations. J Mol Biol 232:600-619.
-
(1993)
J Mol Biol
, vol.232
, pp. 600-619
-
-
Daggett, V.1
Levitt, M.2
-
7
-
-
0028231194
-
Protein folding ↔ unfolding dynamics
-
Daggett V, Levitt M. 1994. Protein folding ↔ unfolding dynamics. Curr Opin Struct Biol 4:291-295.
-
(1994)
Curr Opin Struct Biol
, vol.4
, pp. 291-295
-
-
Daggett, V.1
Levitt, M.2
-
8
-
-
0343368213
-
The stabilities of globular proteins
-
Oxender DL, Fox CF, eds.
-
Dill K 1987. The stabilities of globular proteins. In: Oxender DL, Fox CF, eds. Protein engineering. pp 187-192.
-
(1987)
Protein Engineering
, pp. 187-192
-
-
Dill, K.1
-
9
-
-
0025370815
-
Dominant forces in protein folding
-
Dill K. 1990. Dominant forces in protein folding. Biochemistry 29:7133-7155.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.1
-
10
-
-
0003742069
-
-
London: University College, Department of Biochemistry and Molecular Biology
-
Hubbard SJ, Thornton JM. 1993. NACCESS computer program. London: University College, Department of Biochemistry and Molecular Biology.
-
(1993)
NACCESS Computer Program
-
-
Hubbard, S.J.1
Thornton, J.M.2
-
11
-
-
0028868995
-
The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: Evidence for a nucleation-condensation mechanism for protein folding
-
Itzhaki LS, Otzen DE, Fersht AR. 1995. The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: Evidence for a nucleation-condensation mechanism for protein folding. J Mol Biol 254:260-288.
-
(1995)
J Mol Biol
, vol.254
, pp. 260-288
-
-
Itzhaki, L.S.1
Otzen, D.E.2
Fersht, A.R.3
-
12
-
-
0028180523
-
Application of scaled particle theory to model the hydrophobic effect: Implications for molecular association and protein stability
-
Jackson RM, Sternberg MJ. 1994. Application of scaled particle theory to model the hydrophobic effect: Implications for molecular association and protein stability. Protein Eng 7:371-384.
-
(1994)
Protein Eng
, vol.7
, pp. 371-384
-
-
Jackson, R.M.1
Sternberg, M.J.2
-
14
-
-
36549092795
-
Efficient computation of absolute free energies of binding by computer simulations. Application to the methane dimer in water
-
Jorgenson WL, Buckner JK, Boudon S, Tirado-Rives J. 1988. Efficient computation of absolute free energies of binding by computer simulations. Application to the methane dimer in water. J Chem Phys 89:3742.
-
(1988)
J Chem Phys
, vol.89
, pp. 3742
-
-
Jorgenson, W.L.1
Buckner, J.K.2
Boudon, S.3
Tirado-Rives, J.4
-
15
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgenson WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML. 1983. Comparison of simple potential functions for simulating liquid water. J Chem Phys 79:926-935.
-
(1983)
J Chem Phys
, vol.79
, pp. 926-935
-
-
Jorgenson, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
16
-
-
0028949547
-
Theoretical studies of protein folding and unfolding
-
Karplus M, Sali A. 1995. Theoretical studies of protein folding and unfolding. Curr Opin Struct Biol 5:58-73.
-
(1995)
Curr Opin Struct Biol
, vol.5
, pp. 58-73
-
-
Karplus, M.1
Sali, A.2
-
17
-
-
0008863560
-
Some factors in the interpretation of protein denaturation
-
Kauzmann W. 1959. Some factors in the interpretation of protein denaturation. Adv Protein Chem 14:1-63.
-
(1959)
Adv Protein Chem
, vol.14
, pp. 1-63
-
-
Kauzmann, W.1
-
18
-
-
0028931751
-
Kinetics of hydrogen bond breakage in the process of unfolding of ribonuclease A measured by pulsed hydrogen exchange
-
Kiefhaber T, Baldwin RL. 1995. Kinetics of hydrogen bond breakage in the process of unfolding of ribonuclease A measured by pulsed hydrogen exchange. Proc Natl Acad Sci USA 92:2657-2661.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 2657-2661
-
-
Kiefhaber, T.1
Baldwin, R.L.2
-
19
-
-
0028143603
-
Characterization of the transition state of protein unfolding by use of molecular dynamics: Chymotrypsin inhibitor 2
-
Li A, Daggett V. 1994. Characterization of the transition state of protein unfolding by use of molecular dynamics: Chymotrypsin inhibitor 2. Proc Natl Acad Sci USA 91:10430-10434.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 10430-10434
-
-
Li, A.1
Daggett, V.2
-
20
-
-
0026588145
-
Theory of hydrophobicity: Transient cavities in molecular liquids
-
Pratt LR, Pohorille A. 1992. Theory of hydrophobicity: Transient cavities in molecular liquids. Proc Natl Acad Sci USA 89:2995-2999.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 2995-2999
-
-
Pratt, L.R.1
Pohorille, A.2
-
21
-
-
0002278843
-
Scaled particle methods in the statistical thermodynamics of fluids
-
Reiss H. 1965. Scaled particle methods in the statistical thermodynamics of fluids. Adv Chem Phys 9:1-84.
-
(1965)
Adv Chem Phys
, vol.9
, pp. 1-84
-
-
Reiss, H.1
-
22
-
-
0017429069
-
Areas, volumes, packing and protein structure
-
Richards FM. 1977. Areas, volumes, packing and protein structure. Annu Rev Biophys Bioeng 6:151-176.
-
(1977)
Annu Rev Biophys Bioeng
, vol.6
, pp. 151-176
-
-
Richards, F.M.1
-
23
-
-
0026579572
-
The folding of an enzyme. III. Structure of the transition state for unfolding of barnase analysed by a protein engineering procedure
-
Serrano L, Matouschek A, Fersht AR. 1992. The folding of an enzyme. III. Structure of the transition state for unfolding of barnase analysed by a protein engineering procedure. J Mol Biol 224:805-818.
-
(1992)
J Mol Biol
, vol.224
, pp. 805-818
-
-
Serrano, L.1
Matouschek, A.2
Fersht, A.R.3
-
24
-
-
0029000696
-
Knowledge-based potentials for proteins
-
Sippl MJ. 1995. Knowledge-based potentials for proteins. Curr Opin Struct Biol 5:229-235.
-
(1995)
Curr Opin Struct Biol
, vol.5
, pp. 229-235
-
-
Sippl, M.J.1
-
25
-
-
36448999843
-
Free energy, entropy, and internal energy of hydrophobic interactions: Computer simulations
-
Smith DE, Haymet ADJ. 1993. Free energy, entropy, and internal energy of hydrophobic interactions: Computer simulations. J Chem Phys 98:6445-54.
-
(1993)
J Chem Phys
, vol.98
, pp. 6445-6454
-
-
Smith, D.E.1
Haymet, A.D.J.2
-
26
-
-
0027092952
-
Molecular surface area and the hydrophobic effect
-
Tunon I, Silla E, Pascual-Ahuir JL. 1992. Molecular surface area and the hydrophobic effect. Protein Eng 5:715-716.
-
(1992)
Protein Eng
, vol.5
, pp. 715-716
-
-
Tunon, I.1
Silla, E.2
Pascual-Ahuir, J.L.3
-
27
-
-
0028905560
-
Evidence for a molten globule-like state in protein folding from determination of activation volumes
-
Vidugiris GJA, Markley JL, Royer CA. 1995. Evidence for a molten globule-like state in protein folding from determination of activation volumes. Biochemistry 34:4909-4912.
-
(1995)
Biochemistry
, vol.34
, pp. 4909-4912
-
-
Vidugiris, G.J.A.1
Markley, J.L.2
Royer, C.A.3
-
28
-
-
0029966342
-
Barriers to protein folding: Formation of buried polar interactions is a slow step in acquisition of structure
-
Waldburger CD, Jonsson T, Sauer RT 1996. Barriers to protein folding: Formation of buried polar interactions is a slow step in acquisition of structure. Proc Natl Acad Sci USA 93:2629-2634.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 2629-2634
-
-
Waldburger, C.D.1
Jonsson, T.2
Sauer, R.T.3
-
29
-
-
33751499566
-
Molecular dynamics study of a hydrophobic aggregate in an aqueous solution of methane
-
Wallqvist A. 1991. Molecular dynamics study of a hydrophobic aggregate in an aqueous solution of methane. J Phys Chem 95:8921-8927.
-
(1991)
J Phys Chem
, vol.95
, pp. 8921-8927
-
-
Wallqvist, A.1
-
31
-
-
0025017318
-
Differences between pair and bulk hydrophobic interactions
-
Wood RH, Thompson PT. 1990. Differences between pair and bulk hydrophobic interactions. Proc Natl Acad Sci USA 87:946-949.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 946-949
-
-
Wood, R.H.1
Thompson, P.T.2
-
32
-
-
0029897657
-
Direct evidence for a two-state protein unfolding transition from hydrogen-deuterium exchange, mass spectrometry, and NMR
-
Yi Q, Baker D. 1996. Direct evidence for a two-state protein unfolding transition from hydrogen-deuterium exchange, mass spectrometry, and NMR. Protein Sci 5:1060-1066.
-
(1996)
Protein Sci
, vol.5
, pp. 1060-1066
-
-
Yi, Q.1
Baker, D.2
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