Computational imaging, sensing and diagnostics for global health applications

Current Opinion in Biotechnology

Volumn 25, Issue , 2014, Pages 8-16

  Coskun, Ahmet F ^a,b,c   Ozcan, Aydogan ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Engineering IV   (United States)

^c California Institute of Technology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL IMAGING; COMPUTATIONAL RESOURCES; DELIVERY OF HEALTH CARE; DIAGNOSTIC TOOLS; DIAGNOSTICS TECHNIQUES; GLOBAL HEALTH; LIGHT WEIGHT;

BIOTECHNOLOGY;

COMPUTER; COST EFFECTIVENESS ANALYSIS; DIAGNOSTIC TEST; DIGITAL IMAGING; ENZYME LINKED IMMUNOSORBENT ASSAY; EQUIPMENT DESIGN; FLUORESCENCE IMAGING; HEALTH CARE DELIVERY; HOLOGRAPHY; HUMAN; IMAGE ANALYSIS; IMAGE CYTOMETRY; IMAGING SOFTWARE; INFORMATION PROCESSING; LYMPHOCYTE COUNT; MEDICAL RESEARCH; MICROSCOPE IMAGE; MOBILE PHONE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PUBLIC HEALTH; RAPID TEST; REMOTE SENSING; REVIEW; TELEMEDICINE;

COST-BENEFIT ANALYSIS; DIAGNOSTIC IMAGING; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; WORLD HEALTH;

EID: 84883652582     PISSN: 09581669     EISSN: 18790429     Source Type: Journal    
DOI: 10.1016/j.copbio.2013.08.008     Document Type: Review

References (60)

1. Rust M.J., Bates M., Zhuang X. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat Methods 2006, 3:793-796.
2. Brady D.J., Choi K., Marks D.L., Horisaki R., Lim S. Compressive holography. Opt Expr 2009, 17:13040-13049.
3. Greenbaum A., Luo W., Su T.-W., Göröcs Z., Xue L., Isikman S.O., Coskun A.F., Mudanyali O., Ozcan A. Imaging without lenses: achievements and remaining challenges of wide-field on-chip microscopy. Nat Methods 2012, 9:889-895.
4. Xu W., Jericho M.H., Meinertzhagen I.A., Kreuzer H.J. Digital in-line holography for biological applications. PNAS 2001, 98:11301-11305.
5. Coskun A.F., Sencan I., Su T.-W., Ozcan A. Lensless wide-field fluorescent imaging on a chip using compressive decoding of sparse objects. Opt Expr 2010, 18:10510.
6. Eils R., Athale C. Computational imaging in cell biology. J Cell Biol 2003, 161:477-481.
7. Yun S.H., Tearney G.J., Vakoc B.J., Shishkov M., Oh W.Y., Desjardins A.E., Suter M.J., Chan R.C., Evans J.A., Jang I.-K., et al. Comprehensive volumetric optical microscopy in vivo. Nat Med 2006, 12:1429-1433.
8. Rosen J., Brooker G. Non-scanning motionless fluorescence three-dimensional holographic microscopy. Nat Photon 2008, 2:190-195.
9. Fujimoto J.G. Optical coherence tomography for ultrahigh resolution in vivo imaging. Nat Biotechnol 2003, 21:1361-1367.
10. Yelin D., Rizvi I., White W.M., Motz J.T., Hasan T., Bouma B.E., Tearney G.J. Three-dimensional miniature endoscopy. Nature 2006, 443. 765-765.
11. Gehm M.E., John R., Brady D.J., Willett R.M., Schulz T.J. Single-shot compressive spectral imaging with a dual-disperser architecture. Opt Expr 2007, 15:14013-14027.
12. Wagadarikar A., John R., Willett R., Brady D. Single disperser design for coded aperture snapshot spectral imaging. Appl Opt 2008, 47:B44-B51.
13. Wagadarikar A.A., Pitsianis N.P., Sun X., Brady D.J. Video rate spectral imaging using a coded aperture snapshot spectral imager. Opt Expr 2009, 17:6368.
14. Hong S.-H., Jang J.-S., Javidi B. Three-dimensional volumetric object reconstruction using computational integral imaging. Opt Expr 2004, 12:483-491.
15. Javidi B., Ponce-Díaz R., Hong S.-H. Three-dimensional recognition of occluded objects by using computational integral imaging. Opt Lett 2006, 31:1106-1108.
16. Goda K., Tsia K.K., Jalali B. Serial time-encoded amplified imaging for real-time observation of fast dynamic phenomena. Nature 2009, 458:1145-1149.
17. Brady D.J., Gehm M.E., Stack R.A., Marks D.L., Kittle D.S., Golish D.R., Vera E.M., Feller S.D. Multiscale gigapixel photography. Nature 2012, 486:386-389.
18. Isikman S.O., Greenbaum A., Luo W., Coskun A.F., Ozcan A Giga-pixel lensfree holographic microscopy and tomography using color image sensors. PLoS ONE 2012, 7:e45044.
19. Cossairt O.S., Miau D., Nayar S.K. Gigapixel computational imaging. 2011 IEEE international conference on computational photography (ICCP) 2011, 1-8.
20. Lustig M., Donoho D., Pauly J.M. Sparse MRI: the application of compressed sensing for rapid MR imaging. Magn Reson Med 2007, 58:1182-1195.
21. Mudanyali O., Tseng D., Oh C., Isikman S.O., Sencan I., Bishara W., Oztoprak C., Seo S., Khademhosseini B., Ozcan A. Compact, light-weight and cost-effective microscope based on lensless incoherent holography for telemedicine applications. Lab Chip 2010, 10:1417-1428.
22. Fienup J.R. Reconstruction of an object from the modulus of its Fourier transform. Opt Lett 1978, 3:27-29.
23. Park S.C., Park M.K., Kang M.G. Super-resolution image reconstruction: a technical overview. IEEE Signal Process Mag 2003, 20:21-36.
24. Mudanyali O., Oztoprak C., Tseng D., Erlinger A., Ozcan A. Detection of waterborne parasites using field-portable and cost-effective lensfree microscopy. Lab Chip 2010, 10:2419-2423.
25. Greenbaum A., Sikora U., Ozcan A. Field-portable wide-field microscopy of dense samples using multi-height pixel super-resolution based lensfree imaging. Lab Chip 2012, 12:1242-1245.
26. Greenbaum A., Feizi A., Akbari N., Ozcan A. Wide-field computational color imaging using pixel super-resolved on-chip microscopy. Opt Expr 2013, 21:12469-12483.
27. Mudanyali O., McLeod E., Luo W., Greenbaum A., Coskun A.F., Hennequin Y., Allier C.P., Ozcan A. Wide-field optical detection of nanoparticles using on-chip microscopy and self-assembled nanolenses. Nat Photonic 2013, 7:247-254.
28. Cui X., Lee L.M., Heng X., Zhong W., Sternberg P.W., Psaltis D., Yang C. Lensless high-resolution on-chip optofluidic microscopes for Caenorhabditis elegans and cell imaging. Proc Natl Acad Sci 2008, 31:10670-10675.
29. Bishara W., Su T.-W., Coskun A.F., Ozcan A. Lensfree on-chip microscopy over a wide field-of-view using pixel super-resolution. Opt Expr 2010, 18:11181-11191.
30. Lee S.A., Leitao R., Zheng G., Yang S., Rodriguez A., Yang C. Color capable sub-pixel resolving optofluidic microscope and its application to blood cell imaging for malaria diagnosis. PLoS ONE 2011, 6:e26127.
31. Bishara W., Isikman S.O., Ozcan A. Lensfree optofluidic microscopy and tomography. Ann Biomed Eng 2012, 40:251-262.
32. Isikman S.O., Bishara W., Zhu H., Ozcan A. Optofluidic tomography on a chip. Appl Phys Lett 2011, 98:161109-161111.
33. Isikman S.O., Bishara W., Mavandadi S., Yu F.W., Feng S., Lau R., Ozcan A. Lens-free optical tomographic microscope with a large imaging volume on a chip. Proc Natl Acad Sci 2011, 18:7296-7301.
34. Lee M., Yaglidere O., Ozcan A. Field-portable reflection and transmission microscopy based on lensless holography. Biomed Opt Expr 2011, 2:2721-2730.
35. Zhu H., Yaglidere O., Su T.-W., Tseng D., Ozcan A. Cost-effective and compact wide-field fluorescent imaging on a cell-phone. Lab Chip 2011, 11:315-322.
36. Ramachandraiah H., Amasia M., Cole J., Sheard P., Pickhaver S., Walker C., Wirta V., Lexow P., Lione R., Russom A. Lab-on-DVD: standard DVD drives as a novel laser scanning microscope for image based point of care diagnostics. Lab Chip 2013, 13:1578-1585.
37. Janzen M.C., Ponder J.B., Bailey D.P., Ingison C.K., Suslick K.S. Colorimetric sensor arrays for volatile organic compounds. Anal Chem 2006, 78:3591-3600.
38. Lapresta-Fernández A., Capitán-Vallvey L.F. Scanometric potassium determination with ionophore-based disposable sensors. Sens Actuators B: Chem 2008, 134:694-701.
39. Levin-Reisman I., Gefen O., Fridman O., Ronin I., Shwa D., Sheftel H., Balaban N.Q. Automated imaging with ScanLag reveals previously undetectable bacterial growth phenotypes. Nat Meth 2010, 7:737-739.
40. Zhu H., Mavandadi S., Coskun A.F., Yaglidere O., Ozcan A. Optofluidic fluorescent imaging cytometry on a cell phone. Anal Chem 2011, 83:6641-6647.
41. Zhu H., Sencan I., Wong J., Dimitrov S., Tseng D., Nagashima K., Ozcan A. Cost-effective and rapid blood analysis on a cell-phone. Lab Chip 2013, 13:1282-1288.
42. Ghosh K.K., Burns L.D., Cocker E.D., Nimmerjahn A., Ziv Y., Gamal A.E., Schnitzer M.J. Miniaturized integration of a fluorescence microscope. Nat Methods 2011, 8:871-878.
43. Shin D., Pierce M.C., Gillenwater A.M., Williams M.D., Richards-Kortum R.R. A fiber-optic fluorescence microscope using a consumer-grade digital camera for in vivo cellular imaging. PLoS ONE 2010, 5:e11218.
44. Breslauer D.N., Maamari R.N., Switz N.A., Lam W.A., Fletcher D.A. Mobile phone based clinical microscopy for global health applications. PLoS ONE 2009, 4:e6320.
45. Smith Z.J., Chu K., Espenson A.R., Rahimzadeh M., Gryshuk A., Molinaro M., Dwyre D.M., Lane S., Matthews D., Wachsmann-Hogiu S. Cell-phone-based platform for biomedical device development and education applications. PLoS ONE 2011, 6:e17150.
46. Mudanyali O., Dimitrov S., Sikora U., Padmanabhan S., Navruz I., Ozcan A. Integrated rapid-diagnostic-test reader platform on a cellphone. Lab Chip 2012, 12:2678-2686.
47. Coskun A.F., Wong J., Khodadadi D., Nagi R., Tey A., Ozcan A. A personalized food allergen testing platform on a cellphone. Lab Chip 2013, 13:636-640.
48. Kido H., Maquieira A., Hammock B.D. Disc-based immunoassay microarrays. Anal Chim Acta 2000, 411:1-11.
49. Lange S.A., Roth G., Wittemann S., Lacoste T., Vetter A., Grässle J., Kopta S., Kolleck M., Breitinger B., Wick M., et al. Measuring biomolecular binding events with a compact disc player device. Angew Chem 2006, 118:276-279.
50. Li Y., Ou L.M.L., Yu H.-Z. Digitized molecular diagnostics: reading disk-based bioassays with standard computer drives. Anal Chem 2008, 80:8216-8223.
51. Imaad S.M., Lord N., Kulsharova G., Liu G.L. Microparticle and cell counting with digital microfluidic compact disc using standard CD drive. Lab Chip 2011, 11:1448-1456.
52. Shen F., Du W., Kreutz J.E., Fok A., Ismagilov R.F. Digital PCR on a SlipChip. Lab Chip 2010, 10:2666-2672.
53. Vogelstein B., Kinzler K.W. Digital PCR. PNAS 1999, 96:9236-9241.
54. Zhu Q., Gao Y., Yu B., Ren H., Qiu L., Han S., Jin W., Jin Q., Mu Y. Self-priming compartmentalization digital LAMP for point-of-care. Lab Chip 2012, 12:4755-4763.
55. Rissin D.M., Kan C.W., Campbell T.G., Howes S.C., Fournier D.R., Song L., Piech T., Patel P.P., Chang L., Rivnak A.J., et al. Single-molecule enzyme-linked immunosorbent assay detects serum proteins at subfemtomolar concentrations. Nat Biotech 2010, 28:595-599.
56. Kim S.H., Iwai S., Araki S., Sakakihara S., Iino R., Noji H. Large-scale femtoliter droplet array for digital counting of single biomolecules. Lab Chip 2012, 12:4986-4991.
57. Mavandadi S., Feng S., Yu F., Dimitrov S., Yu R., Ozcan A. BioGames: a platform for crowd-sourced biomedical image analysis and telediagnosis. Games Health J 2012, 1:373-376.
58. Mavandadi S., Dimitrov S., Feng S., Yu F., Yu R., Sikora U., Ozcan A. Crowd-sourced BioGames: managing the big data problem for next-generation lab-on-a-chip platforms. Lab Chip 2012, 12:4102-4106.
59. Ahn L., von, Maurer B., McMillen C., Abraham D., Blum M. reCAPTCHA: human-based character recognition via web security measures. Science 2008, 321:1465-1468.
60. Mavandadi S., Dimitrov S., Feng S., Yu F., Sikora U., Yaglidere O., Padmanabhan S., Nielsen K., Ozcan A Distributed medical image analysis and diagnosis through crowd-sourced games: a malaria case study. PLoS ONE 2012, 7:e37245.