Giga-Pixel Lensfree Holographic Microscopy and Tomography Using Color Image Sensors

PLoS ONE

Volumn 7, Issue 9, 2012, Pages

  Isikman, Serhan O ^a   Greenbaum, Alon ^a   Luo, Wei ^a   Coskun, Ahmet F ^a   Ozcan, Aydogan ^a,b,c  

^a University of California   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CAENORHABDITIS ELEGANS; COLOR IMAOGE SENSOR; CONTROLLED STUDY; DIGITAL IMAGING; EQUIPMENT DESIGN; GIGA PIXEL LENSFREE HOLOGRAPHIC MICROSCOPY; GIGA PIXEL LENSFREE HOLOGRAPHIC TOMOGRAPHY; HOLOGRAPHY; IMAGE QUALITY; IMAGE RECONSTRUCTION; MICROSCOPY; NONHUMAN; OPTICAL BIOSENSOR; OPTICAL RESOLUTION; OPTICAL TOMOGRAPHY; PERFORMANCE MEASUREMENT SYSTEM; PROCESS DESIGN; PROCESS DEVELOPMENT; PROCESS TECHNOLOGY; THREE DIMENSIONAL IMAGING; VOXEL BASED MORPHOMETRY;

ANIMALS; CAENORHABDITIS ELEGANS; COLOR; HOLOGRAPHY; IMAGE PROCESSING, COMPUTER-ASSISTED; MICROSCOPY; REPRODUCIBILITY OF RESULTS; TOMOGRAPHY;

CAENORHABDITIS ELEGANS;

EID: 84866340657     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0045044     Document Type: Article

References (52)

1. Lineback R (n.d.) CMOS Image Sensors Regaining Growth Momentum. Available:http://www.icinsights.com/data/articles/documents/265.pdf.
2. Brady DJ (2009) Optical Imaging and Spectroscopy. Hoboken, NJ, USA: John Wiley & Sons, Inc. p. Available:http://doi.wiley.com/10.1002/9780470443736. Accessed 19 June 2012.
3. Breslauer DN, Maamari RN, Switz NA, Lam WA, Fletcher DA, (2009) Mobile Phone Based Clinical Microscopy for Global Health Applications. PLoS ONE 4: e6320 doi:10.1371/journal.pone.0006320.
4. Zhu H, Yaglidere O, Su T-W, Tseng D, Ozcan A, (2011) Cost-effective and compact wide-field fluorescent imaging on a cell-phone. Lab on a Chip 11: 315 doi:10.1039/c0lc00358a.
5. Tseng D, Mudanyali O, Oztoprak C, Isikman SO, Sencan I, et al. (2010) Lensfree microscopy on a cellphone. Lab on a Chip 10: 1787 doi:10.1039/c003477k.
6. Smith ZJ, Chu K, Espenson AR, Rahimzadeh M, Gryshuk A, et al. (2011) Cell-Phone-Based Platform for Biomedical Device Development and Education Applications. PLoS ONE 6: e17150 doi:10.1371/journal.pone.0017150.
7. Zhu H, Mavandadi S, Coskun AF, Yaglidere O, Ozcan A (2011) Optofluidic Fluorescent Imaging Cytometry on a Cell Phone. Analytical Chemistry: 110802145633047. doi:10.1021/ac201587a.
8. Zhu H, Sikora U, Ozcan A, (2012) Quantum dot enabled detection of Escherichia coli using a cell-phone. The Analyst 137: 2541 doi:10.1039/c2an35071h.
9. Psaltis D, Quake SR, Yang C, (2006) Developing optofluidic technology through the fusion of microfluidics and optics. Nature 442: 381-386 doi:10.1038/nature05060.
10. Pang S, Cui X, DeModena J, Wang YM, Sternberg P, et al. (2010) Implementation of a color-capable optofluidic microscope on a RGB CMOS color sensor chip substrate. Lab on a Chip 10: 411 doi:10.1039/b919004j.
11. Lange D, Storment CW, Conley CA, Kovacs GTA, (2005) A microfluidic shadow imaging system for the study of the nematode Caenorhabditis elegans in space. Sensors and Actuators B: Chemical 107: 904-914 doi:10.1016/j.snb.2004.12.039.
12. Greenbaum A, Sikora U, Ozcan A, (2012) Field-portable wide-field microscopy of dense samples using multi-height pixel super-resolution based lensfree imaging. Lab on a Chip 12: 1242 doi:10.1039/c2lc21072j.
13. Greenbaum A, Ozcan A, (2012) Maskless imaging of dense samples using pixel super-resolution based multi-height lensfree on-chip microscopy. Optics Express 20: 3129 doi:10.1364/OE.20.003129.
14. Oh C, Isikman SO, Khademhosseinieh B, Ozcan A, (2010) On-chip differential interference contrast microscopy using lensless digital holography. Optics Express 18: 4717 doi:10.1364/OE.18.004717.
15. Mudanyali O, Tseng D, Oh C, Isikman SO, Sencan I, et al. (2010) Compact, light-weight and cost-effective microscope based on lensless incoherent holography for telemedicine applications. Lab on a Chip 10: 1417 doi:10.1039/c000453g.
16. Seo S, Isikman SO, Sencan I, Mudanyali O, Su T-W, et al. (2010) High-Throughput Lens-Free Blood Analysis on a Chip. Analytical Chemistry 82: 4621-4627 doi:10.1021/ac1007915.
17. Mudanyali O, Oztoprak C, Tseng D, Erlinger A, Ozcan A, (2010) Detection of waterborne parasites using field-portable and cost-effective lensfree microscopy. Lab on a Chip 10: 2419 doi:10.1039/c004829a.
18. Su T-W, Erlinger A, Tseng D, Ozcan A, (2010) Compact and Light-Weight Automated Semen Analysis Platform Using Lensfree on-Chip Microscopy. Analytical Chemistry 82: 8307-8312 doi:10.1021/ac101845q.
19. Bishara W, Su T-W, Coskun AF, Ozcan A, (2010) Lensfree on-chip microscopy over a wide field-of-view using pixel super-resolution. Optics Express 18: 11181 doi:10.1364/OE.18.011181.
20. Bishara W, Sikora U, Mudanyali O, Su T-W, Yaglidere O, et al. (2011) Holographic pixel super-resolution in portable lensless on-chip microscopy using a fiber-optic array. Lab on a Chip 11: 1276 doi:10.1039/c0lc00684j.
21. Isikman SO, Bishara W, Sikora U, Yaglidere O, Yeah J, et al. (2011) Field-portable lensfree tomographic microscope. Lab on a Chip 11: 2222 doi:10.1039/c1lc20127a.
22. Isikman SO, Bishara W, Zhu H, Ozcan A, (2011) Optofluidic Tomography on a Chip. Applied Physics Letters 98: 161109 doi:10.1063/1.3548564.
23. Isikman SO, Bishara W, Mavandadi S, Yu FW, Feng S, et al. (2011) Lens-free optical tomographic microscope with a large imaging volume on a chip. Proceedings of the National Academy of Sciences 108: 7296-7301 doi:10.1073/pnas.1015638108.
24. Coskun AF, Sencan I, Su T-W, Ozcan A, (2011) Wide-field lensless fluorescent microscopy using a tapered fiber-optic faceplate on a chip. The Analyst 136: 3512 doi:10.1039/c0an00926a.
25. Khademhosseinieh B, Sencan I, Biener G, Su T-W, Coskun AF, et al. (2010) Lensfree on-chip imaging using nanostructured surfaces. Applied Physics Letters 96: 171106 doi:10.1063/1.3405719.
26. Nokia 808 PureView (n.d.). Nokia. Available:http://www.nokia.com/global/products/phone/808pureview/. Accessed 19 June 2012.
27. Yamaguchi I, Matsumura T, Kato J, (2002) Phase-shifting color digital holography. Optics Letters 27: 1108 doi:10.1364/OL.27.001108.
28. Gabor D, (1948) A New Microscopic Principle. Nature 161: 777-778 doi:10.1038/161777a0.
29. Xu W, (2001) Digital in-line holography for biological applications. Proceedings of the National Academy of Sciences 98: 11301-11305 doi:10.1073/pnas.191361398.
30. Cuche E, Bevilacqua F, Depeursinge C, (1999) Digital holography for quantitative phase-contrast imaging. Optics Letters 24: 291 doi:10.1364/OL.24.000291.
31. Grilli S, Ferraro P, De Nicola S, Finizio A, Pierattini G, et al. (2001) Whole optical wavefields reconstruction by digital holography. Optics Express 9: 294 doi:10.1364/OE.9.000294.
32. Martínez-León L, Pedrini G, Osten W, (2005) Applications of short-coherence digital holography in microscopy. Applied Optics 44: 3977 doi:10.1364/AO.44.003977.
33. Javidi B, Moon I, Yeom S, Carapezza E, (2005) Three-dimensional imaging and recognition of microorganism using single-exposure on-line (SEOL) digital holography. Optics Express 13: 4492 doi:10.1364/OPEX.13.004492.
34. Brady DJ, Choi K, Marks DL, Horisaki R, Lim S, (2009) Compressive Holography. Optics Express 17: 13040 doi:10.1364/OE.17.013040.
35. Liu J-P, Poon T-C, (2009) Two-step-only quadrature phase-shifting digital holography. Optics Letters 34: 250 doi:10.1364/OL.34.000250.
36. Goodman JV (2005) Introduction to Fourier Optics, Roberts & Company Publishers, Greenwood Village, CO.
37. Park S, Park M, Kang M, (2003) Super-resolution Image Reconstruction: A Technical Overview, IEEE Signal Processing Magazine. 20: 21.
38. Hardie RC, (1998) High-resolution image reconstruction from a sequence of rotated and translated frames and its application to an infrared imaging system. Optical Engineering 37: 247 doi:10.1117/1.601623.
39. Garcia-Sucerquia J, Xu W, Jericho MH, Kreuzer HJ, (2006) Immersion digital in-line holographic microscopy. Optics Letters 9: 1211 doi: 10.1364/OL.31.001211.
40. A Greenbaum, W Luo, T.-W Su, Z Göröcs, L Xue, et al. (2012) Imaging without lenses: achievements and remaining challenges of wide-field on-chip microscopy. Nat. Methods, vol. 9, no.9. doi:10.1038/nmeth.2114.
41. Radermacher M (2006) Weighted back-projection methods. Methods for three dimensional visualization of structures in the cell. Springer, New York. 245-273.
42. Mastronarde DN, (1997) Dual-Axis Tomography: An Approach with Alignment Methods That Preserve Resolution. Journal of Structural Biology 120: 343-352 doi:10.1006/jsbi.1997.3919.
43. Arslan I, Tong JR, Midgley PA, (2006) Reducing the missing wedge: High-resolution dual axis tomography of inorganic materials. Ultramicroscopy 106: 994-1000 doi:10.1016/j.ultramic.2006.05.010.
44. Oh W-Y, Bouma BE, Iftimia N, Yelin R, Tearney GJ, (2006) Spectrally-modulated full-field optical coherence microscopy for ultrahigh-resolution endoscopic imaging. Optics Express 14: 8675 doi:10.1364/OE.14.008675.
45. Sung Y, Choi W, Fang-Yen C, Badizadegan K, Dasari RR, et al. (2009) Optical diffraction tomography for high resolution live cell imaging. Optics Express 17: 266 doi:10.1364/OE.17.000266.
46. Brady DJ, Gehm ME, Stack RA, Marks DL, Kittle DS, et al. (2012) Multiscale gigapixel photography. Nature 486: 386 doi:10.1038/nature11150.
47. Wolf E, (1969) Three-dimensional structure determination of semi-transparent objects from holographic data. Optics Communications 1: 153-156 doi:10.1016/0030-4018(69)90052-2.
48. Guo P, Devaney AJ, (2005) Comparison of reconstruction algorithms for optical diffraction tomography. Journal of the Optical Society of America A 22: 2338 doi:10.1364/JOSAA.22.002338.
49. Debailleul M, Simon B, Georges V, Haeberlé O, Lauer V, (2008) Holographic microscopy and diffractive microtomography of transparent samples. Measurement Science and Technology 19: 074009 doi:10.1088/0957-0233/19/7/074009.
50. Charrière F, Pavillon N, Colomb T, Depeursinge C, Heger TJ, et al. (2006) Living specimen tomography by digital holographic microscopy: morphometry of testate amoeba. Optics Express 14: 7005 doi:10.1364/OE.14.007005.
51. Ntziachristos V, (2010) Going deeper than microscopy: the optical imaging frontier in biology. Nature Methods 7: 603-614 doi:10.1038/nmeth.1483.
52. Messaoudi C, Boudier T, Sorzano C, Marco S, (2007) TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopy. BMC Bioinformatics 8: 288 doi:10.1186/1471-2105-8-288.