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Volumn 8, Issue 9, 2013, Pages

Spatiotemporal Dynamics and Epistatic Interaction Sites in Dengue Virus Type 1: A Comprehensive Sequence-Based Analysis

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN PRM; UNCLASSIFIED DRUG; VIRUS PROTEIN;

EID: 84883647820     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0074165     Document Type: Article
Times cited : (10)

References (66)
  • 1
    • 65549154217 scopus 로고    scopus 로고
    • Local and global effects of climate on dengue transmission in Puerto Rico
    • doi:10.1371/journal.pntd.0000382
    • Johansson MA, Dominici F, Glass GE, (2009) Local and global effects of climate on dengue transmission in Puerto Rico. PLOS Negl Trop Dis 3: e382. doi:10.1371/journal.pntd.0000382. PubMed: 19221592.
    • (2009) PLOS Negl Trop Dis , vol.3
    • Johansson, M.A.1    Dominici, F.2    Glass, G.E.3
  • 2
    • 79955708924 scopus 로고    scopus 로고
    • Molecular Surveillance of Circulating Dengue Genotypes Through European Travelers
    • doi:10.1111/j.1708-8305.2011.00501.x
    • Domingo C, Niedrig M, Gascón J, Palacios G, Reyes N, et al. (2011) Molecular Surveillance of Circulating Dengue Genotypes Through European Travelers. J Travel Med 18: 183-190. doi:10.1111/j.1708-8305.2011.00501.x. PubMed: 21539658.
    • (2011) J Travel Med , vol.18 , pp. 183-190
    • Domingo, C.1    Niedrig, M.2    Gascón, J.3    Palacios, G.4    Reyes, N.5
  • 4
    • 0035024789 scopus 로고    scopus 로고
    • Climate variability and change in the United States: potential impacts on vector- and rodent-borne diseases
    • doi:10.2307/3435012
    • Gubler DJ, Reiter P, Ebi KL, Yap W, Nasci R, et al. (2001) Climate variability and change in the United States: potential impacts on vector- and rodent-borne diseases. Environ Health Perspect 109 (Suppl 2):: 223-233. doi:10.2307/3435012. PubMed: 11359689.
    • (2001) Environ Health Perspect , vol.109 , Issue.SUPPL. 2 , pp. 223-233
    • Gubler, D.J.1    Reiter, P.2    Ebi, K.L.3    Yap, W.4    Nasci, R.5
  • 5
    • 1542330942 scopus 로고    scopus 로고
    • Cost-effectiveness of a pediatric dengue vaccine
    • doi:10.1016/j.vaccine.2003.09.019
    • Shepard DS, Suaya JA, Halstead SB, Nathan MB, Gubler DJ, et al. (2004) Cost-effectiveness of a pediatric dengue vaccine. Vaccine 22: 1275-1280. doi:10.1016/j.vaccine.2003.09.019. PubMed: 15003657.
    • (2004) Vaccine , vol.22 , pp. 1275-1280
    • Shepard, D.S.1    Suaya, J.A.2    Halstead, S.B.3    Nathan, M.B.4    Gubler, D.J.5
  • 6
    • 35748929379 scopus 로고    scopus 로고
    • Dengue
    • doi:10.1016/S0140-6736(07)61687-0
    • Halstead SB, (2007) Dengue. Lancet 370: 1644-1652. doi:10.1016/S0140-6736(07)61687-0. PubMed: 17993365.
    • (2007) Lancet , vol.370 , pp. 1644-1652
    • Halstead, S.B.1
  • 7
    • 84862519983 scopus 로고    scopus 로고
    • World Health Organization W, Fact sheet Geneva: World Health Organization
    • World Health Organization W (2012) Dengue and severe dengue. Fact sheet Geneva: World Health Organization.
    • (2012) Dengue and severe dengue
  • 9
    • 84883638783 scopus 로고    scopus 로고
    • Dengue and dengue haemorrhagic fever
    • World Health Organization W, World Health Organization
    • World Health Organization W (2009) Dengue and dengue haemorrhagic fever. Fact sheet Geneva: World Health Organization.
    • (2009) Fact Sheet Geneva
  • 10
    • 79955898787 scopus 로고    scopus 로고
    • The cost of dengue control
    • doi:10.1016/S0140-6736(11)60470-4
    • Massad E, Coutinho FA, (2011) The cost of dengue control. Lancet 377: 1630-1631. doi:10.1016/S0140-6736(11)60470-4. PubMed: 21546075.
    • (2011) Lancet , vol.377 , pp. 1630-1631
    • Massad, E.1    Coutinho, F.A.2
  • 11
    • 79952654640 scopus 로고    scopus 로고
    • Economic impact of dengue illness in the Americas
    • doi:10.4269/ajtmh.2011.10-0503
    • Shepard DS, Coudeville L, Halasa YA, Zambrano B, Dayan GH, (2011) Economic impact of dengue illness in the Americas. Am J Trop Med Hyg 84: 200-207. doi:10.4269/ajtmh.2011.10-0503. PubMed: 21292885.
    • (2011) Am J Trop Med Hyg , vol.84 , pp. 200-207
    • Shepard, D.S.1    Coudeville, L.2    Halasa, Y.A.3    Zambrano, B.4    Dayan, G.H.5
  • 12
    • 0037404062 scopus 로고    scopus 로고
    • The origin, emergence and evolutionary genetics of dengue virus
    • doi:10.1016/S1567-1348(03)00004-2
    • Holmes EC, Twiddy SS, (2003) The origin, emergence and evolutionary genetics of dengue virus. Infect Genet Evol 3: 19-28. doi:10.1016/S1567-1348(03)00004-2. PubMed: 12797969.
    • (2003) Infect Genet Evol , vol.3 , pp. 19-28
    • Holmes, E.C.1    Twiddy, S.S.2
  • 13
    • 0031823546 scopus 로고    scopus 로고
    • Dengue and dengue hemorrhagic fever
    • PubMed: 9665979
    • Gubler DJ, (1998) Dengue and dengue hemorrhagic fever. Clin Microbiol Rev 11: 480-496. PubMed: 9665979.
    • (1998) Clin Microbiol Rev , vol.11 , pp. 480-496
    • Gubler, D.J.1
  • 15
    • 84868473262 scopus 로고    scopus 로고
    • Population dynamics of DENV-1 genotype V in Brazil is characterized by co-circulation and strain/lineage replacement
    • doi:10.1007/s00705-012-1393-9
    • Drumond BP, Mondini A, Schmidt DJ, Bosch I, Nogueira ML, (2012) Population dynamics of DENV-1 genotype V in Brazil is characterized by co-circulation and strain/lineage replacement. Arch Virol 157: 2061-2073. doi:10.1007/s00705-012-1393-9. PubMed: 22777179.
    • (2012) Arch Virol , vol.157 , pp. 2061-2073
    • Drumond, B.P.1    Mondini, A.2    Schmidt, D.J.3    Bosch, I.4    Nogueira, M.L.5
  • 16
    • 84874672996 scopus 로고    scopus 로고
    • Imported dengue virus serotype 1 from Madeira to Finland 2012
    • PubMed: 23449230, [MedlinePgn:]
    • Huhtamo E, Korhonen E, Vapalahti O, (2013) Imported dengue virus serotype 1 from Madeira to Finland 2012. Euro Surveill 18([MedlinePgn:]) PubMed: 23449230.
    • (2013) Euro Surveill , vol.18
    • Huhtamo, E.1    Korhonen, E.2    Vapalahti, O.3
  • 18
    • 0036924774 scopus 로고    scopus 로고
    • Diversity and evolution of the envelope gene of dengue virus type 1
    • doi:10.1006/viro.2002.1686
    • Goncalvez AP, Escalante AA, Pujol FH, Ludert JE, Tovar D, et al. (2002) Diversity and evolution of the envelope gene of dengue virus type 1. Virology 303: 110-119. doi:10.1006/viro.2002.1686. PubMed: 12482662.
    • (2002) Virology , vol.303 , pp. 110-119
    • Goncalvez, A.P.1    Escalante, A.A.2    Pujol, F.H.3    Ludert, J.E.4    Tovar, D.5
  • 19
    • 38149076067 scopus 로고    scopus 로고
    • [Molecular evolution of dengue virus: a necessary field of research]
    • doi:17853786
    • Añez G, (2007) [Molecular evolution of dengue virus: a necessary field of research]. Invest Clin 48: 273-276. PubMed: 17853786.
    • (2007) Invest Clin , vol.48 , pp. 273-276
    • Añez, G.1
  • 20
    • 64649091589 scopus 로고    scopus 로고
    • Phylogenetic studies reveal existence of multiple lineages of a single genotype of DENV-1 (genotype III) in India during 1956-2007
    • doi:10.1186/1743-422X-6-1
    • Kukreti H, Dash PK, Parida M, Chaudhary A, Saxena P, et al. (2009) Phylogenetic studies reveal existence of multiple lineages of a single genotype of DENV-1 (genotype III) in India during 1956-2007. Virol J 6: 1. doi:10.1186/1743-422X-6-1. PubMed: 19126194.
    • (2009) Virol J , vol.6 , pp. 1
    • Kukreti, H.1    Dash, P.K.2    Parida, M.3    Chaudhary, A.4    Saxena, P.5
  • 21
    • 0346373759 scopus 로고    scopus 로고
    • Unifying the epidemiological and evolutionary dynamics of pathogens
    • doi:10.1126/science.1090727
    • Grenfell BT, Pybus OG, Gog JR, Wood JL, Daly JM, et al. (2004) Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303: 327-332. doi:10.1126/science.1090727. PubMed: 14726583.
    • (2004) Science , vol.303 , pp. 327-332
    • Grenfell, B.T.1    Pybus, O.G.2    Gog, J.R.3    Wood, J.L.4    Daly, J.M.5
  • 22
    • 82655162070 scopus 로고    scopus 로고
    • Phylogenetic and epidemic modeling of rapidly evolving infectious diseases
    • doi:10.1016/j.meegid.2011.08.005
    • Kühnert D, Wu CH, Drummond AJ, (2011) Phylogenetic and epidemic modeling of rapidly evolving infectious diseases. Infect Genet Evol 11: 1825-1841. doi:10.1016/j.meegid.2011.08.005. PubMed: 21906695.
    • (2011) Infect Genet Evol , vol.11 , pp. 1825-1841
    • Kühnert, D.1    Wu, C.H.2    Drummond, A.J.3
  • 23
    • 0037168563 scopus 로고    scopus 로고
    • Dynamics and selection of many-strain pathogens
    • doi:10.1073/pnas.252512799
    • Gog JR, Grenfell BT, (2002) Dynamics and selection of many-strain pathogens. Proc Natl Acad Sci U S A 99: 17209-17214. doi:10.1073/pnas.252512799. PubMed: 12481034.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 17209-17214
    • Gog, J.R.1    Grenfell, B.T.2
  • 24
    • 33845879635 scopus 로고    scopus 로고
    • Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans
    • doi:10.1126/science.1132745
    • Koelle K, Cobey S, Grenfell B, Pascual M, (2006) Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans. Science 314: 1898-1903. doi:10.1126/science.1132745. PubMed: 17185596.
    • (2006) Science , vol.314 , pp. 1898-1903
    • Koelle, K.1    Cobey, S.2    Grenfell, B.3    Pascual, M.4
  • 25
    • 0034054286 scopus 로고    scopus 로고
    • Evolutionary relationships of endemic/epidemic and sylvatic dengue viruses
    • doi:10.1128/JVI.74.7.3227-3234.2000
    • Wang E, Ni H, Xu R, Barrett AD, Watowich SJ, et al. (2000) Evolutionary relationships of endemic/epidemic and sylvatic dengue viruses. J Virol 74: 3227-3234. doi:10.1128/JVI.74.7.3227-3234.2000. PubMed: 10708439.
    • (2000) J Virol , vol.74 , pp. 3227-3234
    • Wang, E.1    Ni, H.2    Xu, R.3    Barrett, A.D.4    Watowich, S.J.5
  • 26
    • 79959834106 scopus 로고    scopus 로고
    • Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission
    • PubMed: 21655108
    • Raghwani J, Rambaut A, Holmes EC, Hang VT, Hien TT, et al. (2011) Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission. PLOS Pathog 7: e1002064. PubMed: 21655108.
    • (2011) PLOS Pathog , vol.7
    • Raghwani, J.1    Rambaut, A.2    Holmes, E.C.3    Hang, V.T.4    Hien, T.T.5
  • 27
    • 77957233168 scopus 로고    scopus 로고
    • Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
    • doi:10.1093/bioinformatics/btq429
    • Delport W, Poon AF, Frost SD, Kosakovsky Pond SL, (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26: 2455-2457. doi:10.1093/bioinformatics/btq429. PubMed: 20671151.
    • (2010) Bioinformatics , vol.26 , pp. 2455-2457
    • Delport, W.1    Poon, A.F.2    Frost, S.D.3    Kosakovsky Pond, S.L.4
  • 28
    • 50549084385 scopus 로고    scopus 로고
    • Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models
    • doi:10.1093/bioinformatics/btn313
    • Poon AF, Lewis FI, Frost SD, Kosakovsky Pond SL, (2008) Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models. Bioinformatics 24: 1949-1950. doi:10.1093/bioinformatics/btn313. PubMed: 18562270.
    • (2008) Bioinformatics , vol.24 , pp. 1949-1950
    • Poon, A.F.1    Lewis, F.I.2    Frost, S.D.3    Kosakovsky Pond, S.L.4
  • 29
    • 36948998606 scopus 로고    scopus 로고
    • An evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope
    • doi:10.1371/journal.pcbi.0030231
    • Poon AF, Lewis FI, Pond SL, Frost SD, (2007) An evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope. PLOS Comput Biol 3: e231. doi:10.1371/journal.pcbi.0030231. PubMed: 18039027.
    • (2007) PLOS Comput Biol , vol.3
    • Poon, A.F.1    Lewis, F.I.2    Pond, S.L.3    Frost, S.D.4
  • 30
    • 79960425867 scopus 로고    scopus 로고
    • Why do RNA viruses recombine?
    • doi:10.1038/nrmicro2614
    • Simon-Loriere E, Holmes EC, (2011) Why do RNA viruses recombine? Nat Rev Microbiol 9: 617-626. doi:10.1038/nrmicro2614. PubMed: 21725337.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 617-626
    • Simon-Loriere, E.1    Holmes, E.C.2
  • 31
    • 0038024171 scopus 로고    scopus 로고
    • Molecular epidemiological study of dengue virus type 1 in Taiwan
    • doi:10.1002/jmv.10410
    • Hwang KP, Chu PY, Tung YC, Wang HL, Yueh YY, et al. (2003) Molecular epidemiological study of dengue virus type 1 in Taiwan. J Med Virol 70: 404-409. doi:10.1002/jmv.10410. PubMed: 12767004.
    • (2003) J Med Virol , vol.70 , pp. 404-409
    • Hwang, K.P.1    Chu, P.Y.2    Tung, Y.C.3    Wang, H.L.4    Yueh, Y.Y.5
  • 32
    • 0035096557 scopus 로고    scopus 로고
    • Molecular epidemiology of enterovirus 71 in Taiwan
    • doi:10.1007/s007050170164
    • Chu PY, Lin KH, Hwang KP, Chou LC, Wang CF, et al. (2001) Molecular epidemiology of enterovirus 71 in Taiwan. Arch Virol 146: 589-600. doi:10.1007/s007050170164. PubMed: 11338392.
    • (2001) Arch Virol , vol.146 , pp. 589-600
    • Chu, P.Y.1    Lin, K.H.2    Hwang, K.P.3    Chou, L.C.4    Wang, C.F.5
  • 33
  • 34
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: phylogenetic model averaging
    • doi:10.1093/molbev/msn083
    • Posada D, (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256. doi:10.1093/molbev/msn083. PubMed: 18397919.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 35
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • PubMed: 9847317
    • Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, et al. (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73: 152-160. PubMed: 9847317.
    • (1999) J Virol , vol.73 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5
  • 36
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: a flexible and fast computer program for analyzing recombination
    • doi:10.1093/bioinformatics/btq467
    • Martin DP, Lemey P, Lott M, Moulton V, Posada D, et al. (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26: 2462-2463. doi:10.1093/bioinformatics/btq467. PubMed: 20798170.
    • (2010) Bioinformatics , vol.26 , pp. 2462-2463
    • Martin, D.P.1    Lemey, P.2    Lott, M.3    Moulton, V.4    Posada, D.5
  • 37
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • doi:10.1093/molbev/msr121
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739. doi:10.1093/molbev/msr121. PubMed: 21546353.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 38
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • doi:10.1093/bioinformatics/17.8.754
    • Huelsenbeck JP, Ronquist F, (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755. doi:10.1093/bioinformatics/17.8.754. PubMed: 11524383.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 39
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • doi:10.1186/1471-2148-7-214
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214. doi:10.1186/1471-2148-7-214. PubMed: 17996036.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 40
    • 80053959139 scopus 로고    scopus 로고
    • SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics
    • doi:10.1093/bioinformatics/btr481
    • Bielejec F, Rambaut A, Suchard MA, Lemey P, (2011) SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics 27: 2910-2912. doi:10.1093/bioinformatics/btr481. PubMed: 21911333.
    • (2011) Bioinformatics , vol.27 , pp. 2910-2912
    • Bielejec, F.1    Rambaut, A.2    Suchard, M.A.3    Lemey, P.4
  • 41
    • 77957133003 scopus 로고    scopus 로고
    • GeoPhylo: an online tool for developing visualizations of phylogenetic trees in geographic space
    • doi:10.1111/j.1600-0587.2009.06412.x
    • Hill A, Guralnick R, (2010) GeoPhylo: an online tool for developing visualizations of phylogenetic trees in geographic space. Ecography 33: 1-4. doi:10.1111/j.1600-0587.2009.06412.x.
    • (2010) Ecography , vol.33 , pp. 1-4
    • Hill, A.1    Guralnick, R.2
  • 42
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: software package for data analysis in molecular biology and evolution
    • doi:10.1093/jhered/92.4.371
    • Xia X, Xie Z, (2001) DAMBE: software package for data analysis in molecular biology and evolution. J Hered 92: 371-373. doi:10.1093/jhered/92.4.371. PubMed: 11535656.
    • (2001) J Hered , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 43
    • 80155187383 scopus 로고    scopus 로고
    • A random effects branch-site model for detecting episodic diversifying selection
    • doi:10.1093/molbev/msr125
    • Kosakovsky Pond SL, Murrell B, Fourment M, Frost SD, Delport W, et al. (2011) A random effects branch-site model for detecting episodic diversifying selection. Mol Biol Evol 28: 3033-3043. doi:10.1093/molbev/msr125. PubMed: 21670087.
    • (2011) Mol Biol Evol , vol.28 , pp. 3033-3043
    • Kosakovsky Pond, S.L.1    Murrell, B.2    Fourment, M.3    Frost, S.D.4    Delport, W.5
  • 44
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after all: a comparison of methods for detecting amino acid sites under selection
    • doi:10.1093/molbev/msi105
    • Kosakovsky Pond SL, Frost SD, (2005) Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22: 1208-1222. doi:10.1093/molbev/msi105. PubMed: 15703242.
    • (2005) Mol Biol Evol , vol.22 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.2
  • 45
    • 14544275616 scopus 로고    scopus 로고
    • A genetic algorithm approach to detecting lineage-specific variation in selection pressure
    • doi:15509724
    • Pond SL, Frost SD, (2005) A genetic algorithm approach to detecting lineage-specific variation in selection pressure. Mol Biol Evol 22: 478-485. PubMed: 15509724.
    • (2005) Mol Biol Evol , vol.22 , pp. 478-485
    • Pond, S.L.1    Frost, S.D.2
  • 46
    • 77954065271 scopus 로고    scopus 로고
    • I-TASSER: a unified platform for automated protein structure and function prediction
    • doi:10.1038/nprot.2010.5
    • Roy A, Kucukural A, Zhang Y, (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 5: 725-738. doi:10.1038/nprot.2010.5. PubMed: 20360767.
    • (2010) Nat Protoc , vol.5 , pp. 725-738
    • Roy, A.1    Kucukural, A.2    Zhang, Y.3
  • 47
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the Web: a case study using the Phyre server
    • doi:10.1038/nprot.2009.2
    • Kelley LA, Sternberg MJ, (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4: 363-371. doi:10.1038/nprot.2009.2. PubMed: 19247286.
    • (2009) Nat Protoc , vol.4 , pp. 363-371
    • Kelley, L.A.1    Sternberg, M.J.2
  • 48
    • 53849113942 scopus 로고    scopus 로고
    • Complete nucleotide sequence analysis of a Dengue-1 virus isolated on Easter Island, Chile
    • doi:10.1007/s00705-008-0200-0
    • Cáceres C, Yung V, Araya P, Tognarelli J, Villagra E, et al. (2008) Complete nucleotide sequence analysis of a Dengue-1 virus isolated on Easter Island, Chile. Arch Virol 153: 1967-1970. doi:10.1007/s00705-008-0200-0. PubMed: 18815724.
    • (2008) Arch Virol , vol.153 , pp. 1967-1970
    • Cáceres, C.1    Yung, V.2    Araya, P.3    Tognarelli, J.4    Villagra, E.5
  • 49
    • 63449109345 scopus 로고    scopus 로고
    • Genetic characterization of dengue virus type 1 isolated in Brunei in 2005-2006
    • doi:10.1099/vir.0.005306-0
    • Osman O, Fong MY, Sekaran SD, (2009) Genetic characterization of dengue virus type 1 isolated in Brunei in 2005-2006. J Gen Virol 90: 678-686. doi:10.1099/vir.0.005306-0. PubMed: 19218214.
    • (2009) J Gen Virol , vol.90 , pp. 678-686
    • Osman, O.1    Fong, M.Y.2    Sekaran, S.D.3
  • 50
    • 79959446937 scopus 로고    scopus 로고
    • Molecular epidemiology of dengue viruses in southern China from 1978 to 2006
    • doi:10.1186/1743-422X-8-322
    • Wu W, Bai Z, Zhou H, Tu Z, Fang M, et al. (2011) Molecular epidemiology of dengue viruses in southern China from 1978 to 2006. Virol J 8: 322. doi:10.1186/1743-422X-8-322. PubMed: 21703015.
    • (2011) Virol J , vol.8 , pp. 322
    • Wu, W.1    Bai, Z.2    Zhou, H.3    Tu, Z.4    Fang, M.5
  • 51
    • 41149127407 scopus 로고    scopus 로고
    • Toward universal flavivirus identification by mass cataloging
    • doi:10.2353/jmoldx.2008.070130
    • Jackson GW, McNichols RJ, Fox GE, Willson RC, (2008) Toward universal flavivirus identification by mass cataloging. J Mol Diagn 10: 135-141. doi:10.2353/jmoldx.2008.070130. PubMed: 18258926.
    • (2008) J Mol Diagn , vol.10 , pp. 135-141
    • Jackson, G.W.1    McNichols, R.J.2    Fox, G.E.3    Willson, R.C.4
  • 52
    • 58149473279 scopus 로고    scopus 로고
    • Detection of RNA from a novel West Nile-like virus and high prevalence of an insect-specific flavivirus in mosquitoes in the Yucatan Peninsula of Mexico
    • Farfan-Ale JA, Lorono-Pino MA, Garcia-Rejon JE, Hovav E, Powers AM, et al. (2009) Detection of RNA from a novel West Nile-like virus and high prevalence of an insect-specific flavivirus in mosquitoes in the Yucatan Peninsula of Mexico. Am J Trop Med Hyg 80: 85-95.
    • (2009) Am J Trop Med Hyg , vol.80 , pp. 85-95
    • Farfan-Ale, J.A.1    Lorono-Pino, M.A.2    Garcia-Rejon, J.E.3    Hovav, E.4    Powers, A.M.5
  • 53
    • 0009650916 scopus 로고    scopus 로고
    • Population dynamics of flaviviruses revealed by molecular phylogenies
    • doi:10.1073/pnas.93.2.548
    • Zanotto PM, Gould EA, Gao GF, Harvey PH, Holmes EC, (1996) Population dynamics of flaviviruses revealed by molecular phylogenies. Proc Natl Acad Sci U S A 93: 548-553. doi:10.1073/pnas.93.2.548. PubMed: 8570593.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 548-553
    • Zanotto, P.M.1    Gould, E.A.2    Gao, G.F.3    Harvey, P.H.4    Holmes, E.C.5
  • 54
    • 0036468861 scopus 로고    scopus 로고
    • Epidemic dengue/dengue hemorrhagic fever as a public health, social and economic problem in the 21st century
    • doi:10.1016/S0966-842X(01)02288-0
    • Gubler DJ, (2002) Epidemic dengue/dengue hemorrhagic fever as a public health, social and economic problem in the 21st century. Trends Microbiol 10: 100-103. doi:10.1016/S0966-842X(01)02288-0. PubMed: 11827812.
    • (2002) Trends Microbiol , vol.10 , pp. 100-103
    • Gubler, D.J.1
  • 55
    • 34250754307 scopus 로고    scopus 로고
    • Inferring the timescale of dengue virus evolution under realistic models of DNA substitution
    • doi:10.1007/s00239-006-0278-5
    • Dunham EJ, Holmes EC, (2007) Inferring the timescale of dengue virus evolution under realistic models of DNA substitution. J Mol Evol 64: 656-661. doi:10.1007/s00239-006-0278-5. PubMed: 17541679.
    • (2007) J Mol Evol , vol.64 , pp. 656-661
    • Dunham, E.J.1    Holmes, E.C.2
  • 56
    • 84857406186 scopus 로고    scopus 로고
    • The structure of genealogies in the presence of purifying selection: a fitness-class coalescent
    • doi:10.1534/genetics.111.134544
    • Walczak AM, Nicolaisen LE, Plotkin JB, Desai MM, (2012) The structure of genealogies in the presence of purifying selection: a fitness-class coalescent. Genetics 190: 753-779. doi:10.1534/genetics.111.134544. PubMed: 22135349.
    • (2012) Genetics , vol.190 , pp. 753-779
    • Walczak, A.M.1    Nicolaisen, L.E.2    Plotkin, J.B.3    Desai, M.M.4
  • 57
    • 0037229543 scopus 로고    scopus 로고
    • Inferring the rate and time-scale of dengue virus evolution
    • doi:10.1093/molbev/msg010
    • Twiddy SS, Holmes EC, Rambaut A, (2003) Inferring the rate and time-scale of dengue virus evolution. Mol Biol Evol 20: 122-129. doi:10.1093/molbev/msg010. PubMed: 12519914.
    • (2003) Mol Biol Evol , vol.20 , pp. 122-129
    • Twiddy, S.S.1    Holmes, E.C.2    Rambaut, A.3
  • 59
    • 79959229189 scopus 로고    scopus 로고
    • Fever from the forest: prospects for the continued emergence of sylvatic dengue virus and its impact on public health
    • doi:10.1038/nrmicro2595
    • Vasilakis N, Cardosa J, Hanley KA, Holmes EC, Weaver SC, (2011) Fever from the forest: prospects for the continued emergence of sylvatic dengue virus and its impact on public health. Nat Rev Microbiol 9: 532-541. doi:10.1038/nrmicro2595. PubMed: 21666708.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 532-541
    • Vasilakis, N.1    Cardosa, J.2    Hanley, K.A.3    Holmes, E.C.4    Weaver, S.C.5
  • 60
    • 0016195146 scopus 로고
    • On the nature of poliovirus genetic recombinants
    • doi:10.1099/0022-1317-23-1-41
    • Copper PD, Steiner-Pryor A, Scotti PD, Delong D, (1974) On the nature of poliovirus genetic recombinants. J Gen Virol 23: 41-49. doi:10.1099/0022-1317-23-1-41. PubMed: 4364875.
    • (1974) J Gen Virol , vol.23 , pp. 41-49
    • Copper, P.D.1    Steiner-Pryor, A.2    Scotti, P.D.3    Delong, D.4
  • 61
    • 34748873170 scopus 로고    scopus 로고
    • Flaviviridae: the viruses and their replication
    • Lippincott Williams & Wilkins
    • Lindenbach BD, Thiel H-J, Rice CM, (2007) Flaviviridae: the viruses and their replication. In: Knipe DM, Howley PM, eds. Fields Virology. Philadelphia: Lippincott Williams & Wilkins pp. pp. 1101-1152.
    • (2007) Fields Virology , pp. 1101-1152
    • Knipe, D.M.1    Howley, P.M.2
  • 62
    • 0037184036 scopus 로고    scopus 로고
    • The interdomain region of dengue NS5 protein that binds to the viral helicase NS3 contains independently functional importin beta 1 and importin alpha/beta-recognized nuclear localization signals
    • doi:10.1074/jbc.M204977200
    • Brooks AJ, Johansson M, John AV, Xu Y, Jans DA, et al. (2002) The interdomain region of dengue NS5 protein that binds to the viral helicase NS3 contains independently functional importin beta 1 and importin alpha/beta-recognized nuclear localization signals. J Biol Chem 277: 36399-36407. doi:10.1074/jbc.M204977200. PubMed: 12105224.
    • (2002) J Biol Chem , vol.277 , pp. 36399-36407
    • Brooks, A.J.1    Johansson, M.2    John, A.V.3    Xu, Y.4    Jans, D.A.5
  • 63
    • 23844440838 scopus 로고    scopus 로고
    • Dengue virus nonstructural protein NS5 induces interleukin-8 transcription and secretion
    • doi:10.1128/JVI.79.17.11053-11061.2005
    • Medin CL, Fitzgerald KA, Rothman AL, (2005) Dengue virus nonstructural protein NS5 induces interleukin-8 transcription and secretion. J Virol 79: 11053-11061. doi:10.1128/JVI.79.17.11053-11061.2005. PubMed: 16103156.
    • (2005) J Virol , vol.79 , pp. 11053-11061
    • Medin, C.L.1    Fitzgerald, K.A.2    Rothman, A.L.3
  • 64
    • 33646735772 scopus 로고    scopus 로고
    • Nuclear localization of flavivirus RNA synthesis in infected cells
    • doi:10.1128/JVI.01982-05
    • Uchil PD, Kumar AV, Satchidanandam V, (2006) Nuclear localization of flavivirus RNA synthesis in infected cells. J Virol 80: 5451-5464. doi:10.1128/JVI.01982-05. PubMed: 16699025.
    • (2006) J Virol , vol.80 , pp. 5451-5464
    • Uchil, P.D.1    Kumar, A.V.2    Satchidanandam, V.3
  • 65
    • 0036211179 scopus 로고    scopus 로고
    • Modularity and specialization in superfamily 1 and 2 helicases
    • doi:10.1128/JB.184.7.1819-1826.2002
    • Singleton MR, Wigley DB, (2002) Modularity and specialization in superfamily 1 and 2 helicases. J Bacteriol 184: 1819-1826. doi:10.1128/JB.184.7.1819-1826.2002. PubMed: 11889086.
    • (2002) J Bacteriol , vol.184 , pp. 1819-1826
    • Singleton, M.R.1    Wigley, D.B.2
  • 66
    • 84875315310 scopus 로고    scopus 로고
    • Genetic Relatedness of Dengue Viruses in Key West
    • doi:10.3201/eid1904.121295, Florida, USA, 2009-2010
    • Jorge LMJ, Gilberto AS, Harold M, Lillian S, (2013) Genetic Relatedness of Dengue Viruses in Key West, Florida, USA, 2009-2010. Emerg Infect Dis 19: 652-654. doi:10.3201/eid1904.121295. PubMed: 23632064.
    • (2013) Emerg Infect Dis , vol.19 , pp. 652-654
    • Jorge, L.M.J.1    Gilberto, A.S.2    Harold, M.3    Lillian, S.4


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