A stochastic model of calcium puffs based on single-channel data

Biophysical Journal

Volumn 105, Issue 5, 2013, Pages 1133-1142

  Cao, Pengxing ^a   Donovan, Graham ^a   Falcke, Martin ^b   Sneyd, James ^a  

^a UNIVERSITY OF AUCKLAND   (New Zealand)

^b MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

INOSITOL 1,4,5 TRISPHOSPHATE RECEPTOR;

ARTICLE; BIOLOGICAL MODEL; CALCIUM SIGNALING; METABOLISM; STATISTICS; TIME;

CALCIUM SIGNALING; INOSITOL 1,4,5-TRISPHOSPHATE RECEPTORS; MODELS, BIOLOGICAL; STOCHASTIC PROCESSES; TIME FACTORS;

EID: 84883640689     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2013.07.034     Document Type: Article

References (35)

1. M.J. Berridge Elementary and global aspects of calcium signalling J. Physiol. 499 1997 291 306
2. M.J. Berridge, P. Lipp, and M.D. Bootman The versatility and universality of calcium signalling Nat. Rev. Mol. Cell Biol. 1 2000 11 21
3. J.P. Keener, and J. Sneyd Mathematical Physiology 2009 Springer-Verlag New York
4. A. Bergner, and M.J. Sanderson Acetylcholine-induced calcium signaling and contraction of airway smooth muscle cells in lung slices J. Gen. Physiol. 119 2002 187 198
5. 2+ signals Biochim. Biophys. Acta 1820 2012 1185 1194
6. 2+ concentration Proc. Natl. Acad. Sci. USA 89 1992 9895 9899
7. A. Atri, and J. Amundson J. Sneyd A single-pool model for intracellular calcium oscillations and waves in the Xenopus laevis oocyte Biophys. J. 65 1993 1727 1739
8. 3- and calcium-gated channels from endoplasmic reticulum of cerebellum Nature 351 1991 751 754
9. J. Sneyd, and M. Falcke C. Fox A comparison of three models of the inositol trisphosphate receptor Prog. Biophys. Mol. Biol. 85 2004 121 140
10. J. Sneyd, and M. Falcke Models of the inositol trisphosphate receptor Prog. Biophys. Mol. Biol. 89 2005 207 245
11. 2+ release channels Physiol. Rev. 87 2007 593 658
12. 2+ and ATP. J. Physiol. http://jp.physoc.org/ content/early/2012/04/30/jphysiol.2012.228320. Abstract.
13. 2+ release channels EMBO Rep. 8 2007 1044 1051
14. E. Gin, and M. Falcke J. Sneyd A kinetic model of the inositol trisphosphate receptor based on single-channel data Biophys. J. 96 2009 4053 4062
15. G. Ullah, D.O.D. Mak, and J.E. Pearson A data-driven model of a modal gated ion channel: the inositol 1,4,5-trisphosphate receptor in insect Sf9 cells J. Gen. Physiol. 140 2012 159 173
16. 3R accounting for mode changes Biophys. J. 103 2012 658 668
17. 3 receptors underlying calcium puffs in Xenopus oocytes Biophys. J. 91 2006 4033 4044
18. G.D. Dickinson, D. Swaminathan, and I. Parker The probability of triggering calcium puffs is linearly related to the number of inositol trisphosphate receptors in a cluster Biophys. J. 102 2012 1826 1836
19. R. Thul, and M. Falcke Release currents of IP(3) receptor channel clusters and concentration profiles Biophys. J. 86 2004 2660 2673
20. D. Swaminathan, G. Ullah, and P. Jung A simple sequential-binding model for calcium puffs Chaos 19 2009 037109
21. 2+ feedback Biophys. J. 93 2007 1151 1162
22. 2+-release channels Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 78 2008 041915
23. 3 receptors J. Theor. Biol. 259 2009 338 349
24. S. Rüdiger, J.W. Shuai, and I.M. Sokolov Law of mass action, detailed balance, and the modeling of calcium puffs Phys. Rev. Lett. 105 2010 048103
25. 3R channels PLoS Comput. Biol. 8 2012 e1002485
26. 2+ channels Bull. Math. Biol. 67 2005 393 432
27. G. Ullah, and I. Parker J.E. Pearson Multi-scale data-driven modeling and observation of calcium puffs Cell Calcium 52 2012 152 160
28. K. Thurley, and I.F. Smith M. Falcke Timescales of IP(3)-evoked Ca(2+) spikes emerge from Ca(2+) puffs only at the cellular level Biophys. J. 101 2011 2638 2644
29. I. Siekmann, and L.E. Wagner 2nd J. Sneyd MCMC estimation of Markov models for ion channels Biophys. J. 100 2011 1919 1929
30. 2+ puffs in intact mammalian cells Proc. Natl. Acad. Sci. USA 106 2009 6404 6409
31. S. Rüdiger, and J.W. Shuai M. Falcke Hybrid stochastic and deterministic simulations of calcium blips Biophys. J. 93 2007 1847 1857
32. H.J. Rose, and S. Dargan I. Parker "Trigger" events precede calcium puffs in Xenopus oocytes Biophys. J. 91 2006 4024 4032
33. D. Fraiman, and B. Pando S.P. Dawson Analysis of puff dynamics in oocytes: interdependence of puff amplitude and interpuff interval Biophys. J. 90 2006 3897 3907
34. L. Bruno, and G. Solovey S.P. Dawson Quantifying calcium fluxes underlying calcium puffs in Xenopus laevis oocytes Cell Calcium 47 2010 273 286
35. G. Solovey, D. Fraiman, and S.P. Dawson Mean field strategies induce unrealistic non-linearities in calcium puffs Front. Physiol. 2 2011 46