Termination of Ca2+ release for clustered IP3R channels

PLoS Computational Biology

Volumn 8, Issue 5, 2012, Pages

  Rüdiger, Sten ^a   Jung, Peter ^b   Shuai, Jian Wei ^c  

^a HUMBOLDT UNIVERSITY   (Germany)

^b OHIO UNIVERSITY   (United States)

^c XIAMEN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM COMPOUNDS; STOCHASTIC MODELS; STOCHASTIC SYSTEMS;

AUTOCATALYTIC; CA 2+; CALCIUM IONS; CELL TYPES; LOCALISED; MICRO-DOMAINS; PHYSIOLOGICAL PROCESS; RECEPTOR CHANNELS; TIME COURSE; WAVE SPREADING;

DIFFERENTIAL EQUATIONS;

CALCIUM BINDING PROTEIN; INOSITOL 1,4,5 TRISPHOSPHATE RECEPTOR;

ARTICLE; BINDING AFFINITY; CALCIUM SIGNALING; CALCIUM TRANSPORT; CHANNEL GATING; CONTROLLED STUDY; PROTEIN FUNCTION; RECEPTOR BINDING; STOCHASTIC MODEL;

EID: 84863683665     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1002485     Document Type: Article

References (43)

1. Berridge M, Lipp P, Bootman M, (2000) The versatility and universality of calcium signalling. Nat Rev Mol Cell Biol 1: 11-22.
2. Berridge M, Bootman M, Roderick H, (2003) Calcium signalling: dynamics, homeostasis and remodelling. Nat Rev Mol Cell Biol 4: 517-529.
3. Foskett J, White C, Cheung K, Mak D, (2007) Inositol Trisphosphate Receptor Ca2+ Release Channels. Physiol Rev 87: 593.
4. Dupont G, Combettes L, Leybaert L, (2007) Calcium dynamics: spatio-temporal organization from the subcellular to the organ level. Int Rev Cyt 261: 193-245.
5. Smith I, Parker I, (2009) Imaging the quantal substructure of single IP3R channel activity during Ca2+ puffs in intact mammalian cells. Proc Natl Acad Sci U S A 106: 6404.
6. Wei C, Wang X, Chen M, Ouyang K, Song L, et al. (2008) Calcium ickers steer cell migration. Nature 457: 901-905.
7. Di Capite J, Ng S, Parekh A, (2009) Decoding of cytoplasmic Ca2+ oscillations through the spatial signature drives gene expression. Curr Biol 19: 853-858.
8. Parekh A, (2010) Decoding cytosolic ca2+ oscillations. Trends Biochem Sci 36: 78.
9. Berridge M, (1990) Calcium oscillations. J Biol Chem 265: 9583-9586.
10. Rooney T, Sass E, Thomas A, (1989) Characterization of cytosolic calcium oscillations induced by phenylephrine and vasopressin in single fura-2-loaded hepatocytes. J Biol Chem 264: 17131-17141.
11. Lechleiter J, Girard S, Peralta E, Clapham D, (1991) Spiral calcium wave propagation and annihilation in Xenopus laevis oocytes. Science 252: 123-126.
12. Dargan S, Parker I, (2003) Buffer kinetics shape the spatiotemporal patterns of IP3-evoked Ca2+ signals. J Physiol 553: 775-788.
13. Swillens S, Dupont G, Champeil P, (1999) From calcium blips to calcium puffs: Theoretical analysis of the requirements for interchannel communication. Proc Natl Acad Sci U S A 96: 13750-13755.
14. Shuai J, Jung P, (2003) Optimal ion channel clustering for intracellular calcium signaling. Proc Natl Acad Sci U S A 100: 506-510.
15. DeRemigio H, Groff J, Smith G, (2008) Calcium release site ultrastructure and the dynamics of puffs and sparks. Math Med Biol 25: 65.
16. Swaminathan D, Ullah G, Jung P, (2009) A simple sequential-binding model for calcium puffs. Chaos 19: 037109.
17. Rüdiger S, Shuai J, Sokolov I, (2010) Law of mass action, detailed balance, and the modeling of calcium puffs. Phys Rev Lett 105: 048103.
18. Bruno L, Solovey G, Ventura A, Dargan S, Dawson S, (2010) Quantifying calcium uxes underlying calcium puffs in xenopus laevis oocytes. Cell Calcium 47: 273-286.
19. Thurley K, Smith I, Tovey S, Taylor C, Parker I, et al. (2011) Timescales of ip3-evoked ca2+ spikes emerge from ca2+ puffs only at the cellular level. Biophys J 101: 2638-2644.
20. Rüdiger S, Nagaiah C, Warnecke G, Shuai J, (2010) Calcium Domains around Single and Clustered IP3 Receptors and Their Modulation by Buffers. Biophys J 99: 3-12.
21. Neher E, Augustine G, (1992) Calcium gradients and buffers in bovine chromaffin cells. J Physiol 450: 273-301.
22. John L, Mosquera-Caro M, Camacho P, Lechleiter J, (2001) Control of IP3-mediated Ca2+ puffs in xenopus laevis oocytes by the Ca2+-binding protein parvalbumin. J Physiol 535: 3.
23. Taylor C, Tovey S, (2010) IP3 receptors: Toward understanding their activation. Cold Spring Harb Perspect Biol 2: a004010.
24. DeYoung G, Keizer J, (1992) A single-pool inositol 1,4,5-trisphosphate-receptor-based model for agonist-stimulated oscillations in Ca2+ concentration. Proc Natl Acad Sci U S A 89: 9895-9899.
25. Sneyd J, Dufour J, (2002) A dynamic model of the type-2 inositol trisphosphate receptor. Proc Natl Acad Sci U S A 99: 2398.
26. Watras J, Bezprozvanny I, Ehrlich B, (1991) Inositol 1,4,5-trisphosphate-gated channels in cerebellum: presence of multiple conductance states. J Neurosci 11: 3239-3245.
27. Shuai J, Yang D, Pearson J, Rüdiger S, (2009) An investigation of models of the IPR channel in Xenopus oocyte. Chaos 19: 037105.
28. Mak D, Foskett J, (1997) Single-channel kinetics, inactivation, and spatial distribution of inositol trisphophate (IP3) receptor in Xenopus oocyte nucleus. J Gen Physiol 109: 571-587.
29. Mak D, McBride S, Foskett J, (1998) Inositol 1,4,5-tris-phosphate activation of inositol trisphosphate receptor Ca2+ channel by ligand tuning of Ca2+ inhibition. Proc Natl Acad Sci U S A 95: 15821-15825.
30. Demuro A, Parker I, (2008) Multi-dimensional resolution of elementary Ca2+ signals by simultaneous multi-focal imaging. Cell Calcium 43: 367-374.
31. Smith I, Wiltgen S, Parker I, (2009) Localization of puff sites adjacent to the plasma membrane: Functional and spatial characterization of Ca2+ signaling in SH-SY5Y cells utilizing membranepermeant caged IP3. Cell Calcium 45: 65-76.
32. Thul R, Falcke M, (2004) Release currents of IP3 receptor channel clusters and concentration profiles. Biophys J 86: 2660-2673.
33. Shuai J, Pearson J, Parker I, (2008) Modeling Ca2+ Feedback on a Single Inositol 1, 4, 5-Trisphosphate Receptor and Its Modulation by Ca2+ Buffers. Biophys J 95: 3738.
34. Mazzag B, Tignanelli C, Smith G, (2005) The effct of residual Ca2+ on the stochastic gating of Ca2+-regulated Ca2+ channel models. J Theor Biol 235: 121-150.
35. Tanimura A, Morita T, Nezu A, Shitara A, Hashimoto N, et al. (2009) Use of uorescence resonance energy transfer-based biosensors for the quantitative analysis of inositol 1, 4, 5-trisphosphate dynamics in calcium oscillations. J Biol Chem 284: 8910.
36. Marchant J, Callamaras N, Parker I, (1999) Initiation of IP3-mediated Ca2+ waves in Xenopus oocytes. EMBO J 18: 5285-5299.
37. Fraiman D, Pando B, Dargan S, Parker I, Dawson S, (2006) Analysis of puff dynamics in oocytes: interdependence of puff amplitude and interpuff interval. Biophys J 90: 3897-3907.
38. Thul R, Falcke M, (2006) Frequency of elemental events of intracellular Ca2+ dynamics. Phys Rev E 73: 61923.
39. Izhikevich E, (2007) Dynamical systems in neuroscience: the geometry of excitability and bursting. The MIT press.
40. Rintoul G, Baimbridge K, (2003) Effects of calcium buffers and calbindin-D28k upon histamineinduced calcium oscillations and calcium waves in HeLa cells. Cell Calcium 34: 131-144.
41. Dargan S, Schwaller B, Parker I, (2004) Spatiotemporal patterning of IP3-mediated Ca2+ signals in Xenopus oocytes by Ca2+-binding proteins. J Physiol 556: 447-461.
42. Zeller S, Rüdiger S, Engel H, Sneyd J, Warnecke G, et al. (2009) Modeling of the Modulation by Buffers of Ca2+ Release through Clusters of IP3 Receptors. Biophys J 97: 992-1002.
43. Schipke C, Heidemann A, Skupin A, Peters O, Falcke M, et al. (2008) Temperature and nitric oxide control spontaneous calcium transients in astrocytes. Cell Calcium 43: 285-295.