Feedback architectures to regulate flux of components in artificial gene networks

Proceedings of the American Control Conference

Volumn , Issue , 2013, Pages 4747-4752

  Giordano, Giulia ^a   Franco, Elisa ^b   Murray, Richard M ^c  

^a UNIVERSITY OF UDINE   (Italy)

^b Department of Mechanical Engineering ^*  (United States)

^c CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NETWORK ARCHITECTURE; PRODUCT DESIGN; RATE CONSTANTS; RNA; TRANSCRIPTION;

ARTIFICIAL GENE NETWORKS; AUTOREGULATIONS; FEEDBACK ARCHITECTURE; IN-VITRO; PRODUCTION RATES; RATE-MATCHING; REGULATORY FEEDBACK LOOPS; SYNTHETIC GENE NETWORK;

FEEDBACK;

EID: 84883503878     PISSN: 07431619     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/acc.2013.6580572     Document Type: Conference Paper

References (14)

1. F. Bianchini and E. Franco, "StructuraUy robust biological networks," Bio Med Central Systems Biology, vol. 5, no. 1, p. 74, 2011.
2. E. Franco, "Analysis, design, and in vitro implementation of robust biochemical networks," Ph.D. dissertation,C alifornia Institute of Technology, 2011.
3. J. Kim, K. S. White, and E. Winfree, "Construction of an in vitro bistable circuit from synthetic transcriptional switches," Molecular Systems Biology, vol. 2, p. 68, 2006.
4. J. Kim and E. Winfree, "Synthetic in vitro transcriptional oscillators," Molecular Systems Biology, vol. 7. p. 465, 2011.
5. P. Subsoontorn, 1. Kim, and E. Winfree, "Ensemble bayesian analysis of bistability in a synthetic transcriptional switch," ACS Synthetic Biology, 2012.
6. E. Franco,E. Friedrichs,1. Kim,R. Jungmann,R. Murray,E. Winfree, and F. C Simmel, "Timing molecular motion and production with a synthetic transcriptional clock," Proceedings of the National Academy of Sciences, vol. 108, no. 40, pp. E784-E793, 2011.
7. K. A. Afonin, E. Bindewald, A. 1. Yaghoubian, N. Voss, E. Jacovetty, B. A. Shapiro, and L Jaeger, "In vitro assembly of cubic RNAbased scaffolds designed in silico," Nature Nanotechnology, vol. 5, September 2010.
8. S. M. Douglas, I. Bachelet, and G. M. Church, "A logic-gated nan oro bot for targeted transport of molecular payloads," Science, vol. 335, pp. 831-834,2012.
9. H. Gu, J. Chao, S.-J. Xiao, and N. C Seeman, "Dynamic patterning programmed by DNA tiles captured on a DNA origami substrate," Nature Nanotechnology, vol. 4, no. 4, pp. 245-248, 2009.
10. A. Phillips and L Cardelli, "A programming language for composable DNA circuits," Journal of The Royal Society Intetface, 2009.
11. E. Franco, P.-O. Forsberg, and R. M. Murray, "Design, modeling and synthesis of an in vitro transcription rate regulatory circuit," in Proceedings of the American Control Conference, 2008.
12. E. Franco and R. M. Murray, "Design and performance of in vitro transcription rate regulatory circuits," in Proceedings of the IEEE Conference on Decision and Control, 2008.
13. B. Yurke and A. P Mills, "Using DNA to power nanostructures," Genetic Programming and Evolvable Machines, voL 4, pp. 111-122, 2003.
14. M. A. Savageau, "Design of molecular control mechanisms and the demand for gene expression," Proceedings of the National Academy of Sciences of the USA, vol. 74, pp. 5647-5651, 1977.