Design and performance of in vitro transcription rate regulatory circuits

Proceedings of the IEEE Conference on Decision and Control

Volumn , Issue , 2008, Pages 161-166

  Franco, Elisa ^a   Murray, Richard M ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SENSITIVITY ANALYSIS; TIMING CIRCUITS;

CHEMICAL SPECIES; CRUCIAL PARAMETERS; FEEDBACK INTERACTION; FUNDAMENTAL FEATURES; GLOBAL SENSITIVITY ANALYSIS; MICHAELIS-MENTEN KINETIC; REGULATORY CIRCUITS; RNA TRANSCRIPTION;

FEEDBACK;

EID: 62949154042     PISSN: 07431546     EISSN: 25762370     Source Type: Conference Proceeding    
DOI: 10.1109/CDC.2008.4739253     Document Type: Conference Paper

References (15)

1. Alon, U. An Introduction to Systems Biology: Design Principles of Biological Circuits. Chapman & Hall/CRC, 2006
2. Alon, U. Network Motifs: Theory and Experimental Approaches. Nature Reviews Genetics, 2007, 8, 450-461
3. Bishop, J. and Klavins, E. An Improved Autonomous DNA Nanomotor. Nano Letters, 2007, 9, 2574-7
4. Franco, E., Forsberg, P.-O. and Murray, R. M. Design, modeling and synthesis of an in vitro transcription rate regulatory circuit. Proc. of the American Control Conference, June 2007, Seattle, WA. To appear. Available online: http://www.cds.caltech.edu/~elisa/Publications files/FFM ACC08.pdf.
5. Isaacs, F. J., Dwyer, D. J. and Collins, J. J. RNA synthetic biology. Nature Biotechnology, 2006, 24, 545-554
6. Khalil, H. K. Nonlinear Systems. Pearson Higher Education, 2002
7. Kim, J., Hopfield J. J. and Winfree, E. Neural Network Computation by in vitro Transcriptional Circuits. Advances in Neural Information Processing Systems (NIPS), 2004, 17, 681-688
8. Kim, J., White, K. S. and Winfree, E. Construction of an In Vitro Bistable Circuit from Synthetic Transcriptional Switches. Molecular Systems Biology, 2006, 2:68
9. Kim, J. In Vitro Synthetic Transcriptional Networks. California Institute of Technology, 2006
10. Marras, S. A. E. and Kramer, F. R. and Tyagi, S. Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes. Nucl. Acids Res., 30, 2002
11. Noireaux, V., Bar-Ziv, R. and Libchaber, A. Principles of cell-free genetic circuit assembly. Proc. Of The National Academy Of Sciences Of The United States Of America, 2003, 100, 12672-12677
12. Seelig, G., Soloveichik, D., Zhang, D. Y. and Winfree, E. Enzyme-free nucleic acid logic circuits. Science, 2006, 314, 1585-1588
13. Yin, P., Choi, H. M. T., Calvert, C. R., and Pierce, N. A. Programming Biomolecular Self-Assembly Pathways. Nature, 2008, 451:318-322
14. Yurke, B. and Mills, A. P. Using DNA to Power Nanostructures. Genetic Programming and Evolvable Machines, 2003, 4, 111-122
15. Zhang, D. Y., Turberfield, A. J., Yurke, B., and Winfree, E. Engineering Entropy-Driven Reactions and Networks Catalyzed by DNA Science, 2007, 318 (5853), 1121.