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Volumn 5, Issue , 2011, Pages

Structurally robust biological networks

Author keywords

[No Author keywords available]

Indexed keywords

ARABINOSE; CYCLIC AMP;

EID: 79955979079     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-5-74     Document Type: Article
Times cited : (70)

References (42)
  • 1
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: A brief overview
    • 10.1126/science.1069492, 11872829
    • Kitano H. Systems biology: A brief overview. Science 2002, 295(5560):1662-1664. 10.1126/science.1069492, 11872829.
    • (2002) Science , vol.295 , Issue.5560 , pp. 1662-1664
    • Kitano, H.1
  • 2
    • 0030797355 scopus 로고    scopus 로고
    • Robustness in simple biochemical networks
    • 10.1038/43199, 9202124
    • Barkai N, Leibler S. Robustness in simple biochemical networks. Nature 1997, 387(6636):913-917. 10.1038/43199, 9202124.
    • (1997) Nature , vol.387 , Issue.6636 , pp. 913-917
    • Barkai, N.1    Leibler, S.2
  • 3
    • 0033552946 scopus 로고    scopus 로고
    • Robustness in bacterial chemotaxis
    • 10.1038/16483, 9923680
    • Alon U, Surette MG, Barkai N, Leibler S. Robustness in bacterial chemotaxis. Nature 1999, 397(6715):168-171. 10.1038/16483, 9923680.
    • (1999) Nature , vol.397 , Issue.6715 , pp. 168-171
    • Alon, U.1    Surette, M.G.2    Barkai, N.3    Leibler, S.4
  • 5
    • 68749118345 scopus 로고    scopus 로고
    • Defining Network Topologies that Can Achieve Biochemical Adaptation
    • 10.1016/j.cell.2009.06.013, 3068210, 19703401
    • Ma W, Trusina A, El-Samad H, Lim WA, Tang C. Defining Network Topologies that Can Achieve Biochemical Adaptation. Cell 2009, 138(4):760-773. 10.1016/j.cell.2009.06.013, 3068210, 19703401.
    • (2009) Cell , vol.138 , Issue.4 , pp. 760-773
    • Ma, W.1    Trusina, A.2    El-Samad, H.3    Lim, W.A.4    Tang, C.5
  • 6
    • 27844551326 scopus 로고    scopus 로고
    • Dynamic Properties of Network Motifs Contribute to Biological Network Organization
    • 1239925, 16187794
    • Prill RJ, Iglesias PA, Levchenko A. Dynamic Properties of Network Motifs Contribute to Biological Network Organization. PLoS Biology 2005, 3(11):e343.. 1239925, 16187794.
    • (2005) PLoS Biology , vol.3 , Issue.11
    • Prill, R.J.1    Iglesias, P.A.2    Levchenko, A.3
  • 7
    • 41349112310 scopus 로고    scopus 로고
    • Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics
    • 10.1093/bioinformatics/btn060, 18285369
    • Kwon YK, Cho KH. Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics. Bioinformatics 2008, 24(7):987-994. 10.1093/bioinformatics/btn060, 18285369.
    • (2008) Bioinformatics , vol.24 , Issue.7 , pp. 987-994
    • Kwon, Y.K.1    Cho, K.H.2
  • 8
    • 14744272952 scopus 로고    scopus 로고
    • On the robustness of complex heterogeneous gene expression networks
    • 10.1016/j.bpc.2004.12.033, 15752609
    • Gómez-Gardenes J, Y M, Floría LM. On the robustness of complex heterogeneous gene expression networks. Biophysical Chemistry 2005, 115:225-229. 10.1016/j.bpc.2004.12.033, 15752609.
    • (2005) Biophysical Chemistry , vol.115 , pp. 225-229
    • Gómez-Gardenes, J.1    Y, M.2    Floría, L.M.3
  • 9
    • 34547138406 scopus 로고    scopus 로고
    • Dynamical robustness of biological networks with hierarchical distribution of time scales
    • 10.1049/iet-syb:20060083, 17708431
    • Gorban A, Radulescu O. Dynamical robustness of biological networks with hierarchical distribution of time scales. IET Systems Biology 2007, 1(4):238-246. 10.1049/iet-syb:20060083, 17708431.
    • (2007) IET Systems Biology , vol.1 , Issue.4 , pp. 238-246
    • Gorban, A.1    Radulescu, O.2
  • 10
    • 77953998498 scopus 로고    scopus 로고
    • Ground State Robustness as an Evolutionary Design Principle in Signaling Networks
    • 2779451, 19956601
    • Kartal O, Ebenhöh O. Ground State Robustness as an Evolutionary Design Principle in Signaling Networks. PLoS ONE 2009, 4(12):e8001.. 2779451, 19956601.
    • (2009) PLoS ONE , vol.4 , Issue.12
    • Kartal, O.1    Ebenhöh, O.2
  • 12
    • 70450149281 scopus 로고    scopus 로고
    • Robustness of mathematical models for biological systems
    • Tian T. Robustness of mathematical models for biological systems. ANZIAM J 2004, 45:C565-C577.
    • (2004) ANZIAM J , vol.45
    • Tian, T.1
  • 14
    • 77949398351 scopus 로고    scopus 로고
    • Structural Sources of Robustness in Biochemical Reaction Networks
    • 10.1126/science.1183372, 20223989
    • Shinar G, Feinberg M. Structural Sources of Robustness in Biochemical Reaction Networks. Science 2010, 327(5971):1389-1391. 10.1126/science.1183372, 20223989.
    • (2010) Science , vol.327 , Issue.5971 , pp. 1389-1391
    • Shinar, G.1    Feinberg, M.2
  • 15
    • 0023531427 scopus 로고
    • Chemical reaction network structure and the stability of complex isothermal reactors - I. The deficiency zero and deficiency one theorems
    • Feinberg M. Chemical reaction network structure and the stability of complex isothermal reactors - I. The deficiency zero and deficiency one theorems. Chemical Engineering Science 1987, 42:2229-2268.
    • (1987) Chemical Engineering Science , vol.42 , pp. 2229-2268
    • Feinberg, M.1
  • 16
    • 34548530660 scopus 로고    scopus 로고
    • Monotone and near-monotone biochemical networks
    • 10.1007/s11693-007-9005-9, 2533521, 19003437
    • Sontag E. Monotone and near-monotone biochemical networks. Systems and Synthetic Biology 2007, 1:59-87. 10.1007/s11693-007-9005-9, 2533521, 19003437.
    • (2007) Systems and Synthetic Biology , vol.1 , pp. 59-87
    • Sontag, E.1
  • 17
    • 1242274449 scopus 로고    scopus 로고
    • Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems
    • 10.1073/pnas.0308265100, 357011, 14766974
    • Angeli D, Ferrell JE, Sontag ED. Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems. Proceedings of the National Academy of Sciences of the United States of America 2004, 101(7):1822-1827. 10.1073/pnas.0308265100, 357011, 14766974.
    • (2004) Proceedings of the National Academy of Sciences of the United States of America , vol.101 , Issue.7 , pp. 1822-1827
    • Angeli, D.1    Ferrell, J.E.2    Sontag, E.D.3
  • 18
    • 0027555111 scopus 로고
    • Qualitative Theory of Compartmental Systems
    • Jacquez J, Simon C. Qualitative Theory of Compartmental Systems. SIAM Rev 1993, 35:43-79.
    • (1993) SIAM Rev , vol.35 , pp. 43-79
    • Jacquez, J.1    Simon, C.2
  • 21
    • 77649248417 scopus 로고    scopus 로고
    • Graphical methods for analysing feedback in biological networks - A survey
    • Radde N, Bar N, Banaji M. Graphical methods for analysing feedback in biological networks - A survey. Int J Syst Sci 2010, 41:35-46.
    • (2010) Int J Syst Sci , vol.41 , pp. 35-46
    • Radde, N.1    Bar, N.2    Banaji, M.3
  • 22
    • 0003723014 scopus 로고
    • New York: Springer-Verlag, [Applied Mathematical Sciences, xii+396 pp. ISBN 0-387-90258-9]
    • Rouche N, Habets P, Laloy M. Stability theory by Liapunov's direct method 1977, 22. New York: Springer-Verlag, [Applied Mathematical Sciences, xii+396 pp. ISBN 0-387-90258-9].
    • (1977) Stability theory by Liapunov's direct method , vol.22
    • Rouche, N.1    Habets, P.2    Laloy, M.3
  • 23
    • 0033221515 scopus 로고    scopus 로고
    • Set invariance in control - a survey
    • Blanchini F. Set invariance in control - a survey. Automatica 1999, 35(11):1747-1767.
    • (1999) Automatica , vol.35 , Issue.11 , pp. 1747-1767
    • Blanchini, F.1
  • 24
    • 84956472611 scopus 로고    scopus 로고
    • Boston: Birkhäuser, [Systems & Control: Foundations & Applications]
    • Blanchini F, Miani S. Set-theoretic methods in control 2008, 22. Boston: Birkhäuser, [Systems & Control: Foundations & Applications].
    • (2008) Set-theoretic methods in control , vol.22
    • Blanchini, F.1    Miani, S.2
  • 25
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: a literature review
    • 10.1089/10665270252833208, 11911796
    • De Jong H. Modeling and simulation of genetic regulatory systems: a literature review. Journal of Computational Biology 2002, 9:67-103. 10.1089/10665270252833208, 11911796.
    • (2002) Journal of Computational Biology , vol.9 , pp. 67-103
    • De Jong, H.1
  • 27
    • 35248896405 scopus 로고    scopus 로고
    • Principal difference between stability and structural stability (robustness) as used in systems biology.
    • Nikolov S, Yankulova E, Wolkenhauer O, Petrov V. Principal difference between stability and structural stability (robustness) as used in systems biology. Nonlinear Dynamics Psychol Life Sci 2007, 11(4):413-433.
    • (2007) Nonlinear Dynamics Psychol Life Sci , vol.11 , Issue.4 , pp. 413-433
    • Nikolov, S.1    Yankulova, E.2    Wolkenhauer, O.3    Petrov, V.4
  • 28
    • 0242364231 scopus 로고    scopus 로고
    • The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks
    • 10.1016/j.jmb.2003.09.049, 14607112
    • Mangan S, Zaslaver A, Alon U. The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks. Journal of Molecular Biology 2003, 334:197-204. 10.1016/j.jmb.2003.09.049, 14607112.
    • (2003) Journal of Molecular Biology , vol.334 , pp. 197-204
    • Mangan, S.1    Zaslaver, A.2    Alon, U.3
  • 29
    • 34548668642 scopus 로고    scopus 로고
    • Quantitative Characteristics of Gene Regulation by Small RNA
    • 1994261, 17713988
    • Levine E, Zhang Z, Kuhlman T, Hwa T. Quantitative Characteristics of Gene Regulation by Small RNA. PLoS Biology 2007, 5(9):e229.. 1994261, 17713988.
    • (2007) PLoS Biology , vol.5 , Issue.9
    • Levine, E.1    Zhang, Z.2    Kuhlman, T.3    Hwa, T.4
  • 31
    • 54049118804 scopus 로고    scopus 로고
    • A quantitative comparison of sRNA-based and protein-based gene regulation
    • Mehta P, Goyal S, Wingreen NS. A quantitative comparison of sRNA-based and protein-based gene regulation. Mol Syst Biol 2008, 4.
    • (2008) Mol Syst Biol , vol.4
    • Mehta, P.1    Goyal, S.2    Wingreen, N.S.3
  • 32
  • 33
    • 72949131359 scopus 로고
    • L'opéeron: groupe de gènes à expression coordonnée par un opérateur
    • Jacob F, Perrin D, Sanchéz C, Monod. L'opéeron: groupe de gènes à expression coordonnée par un opérateur. J C R Acad Sci 1960, 250:1727-1729.
    • (1960) J C R Acad Sci , vol.250 , pp. 1727-1729
    • Jacob, F.1    Perrin, D.2    Sanchéz, C.3    Monod4
  • 34
    • 0037936613 scopus 로고    scopus 로고
    • Modeling network dynamics: the lac operon, a case study
    • 10.1083/jcb.200301125, 2172934, 12743100
    • Vilar JMG, Guet C, Leibler S. Modeling network dynamics: the lac operon, a case study. Journal of Cell Biology 2003, 161(3):471-476. 10.1083/jcb.200301125, 2172934, 12743100.
    • (2003) Journal of Cell Biology , vol.161 , Issue.3 , pp. 471-476
    • Vilar, J.M.G.1    Guet, C.2    Leibler, S.3
  • 35
    • 0038298805 scopus 로고    scopus 로고
    • Feedback Regulation in the Lactose Operon: A Mathematical Modeling Study and Comparison with Experimental Data
    • 10.1016/S0006-3495(03)70013-7, 1302849, 12719218
    • Yildirim N, Mackey M. Feedback Regulation in the Lactose Operon: A Mathematical Modeling Study and Comparison with Experimental Data. Biophysical Journal 2003, 84(5):2841-2851. 10.1016/S0006-3495(03)70013-7, 1302849, 12719218.
    • (2003) Biophysical Journal , vol.84 , Issue.5 , pp. 2841-2851
    • Yildirim, N.1    Mackey, M.2
  • 36
    • 3042596483 scopus 로고    scopus 로고
    • Dynamics and bistability in a reduced model of the lac operon
    • 10.1063/1.1689451, 15189056
    • Yildirim N, Santillan M, Horike D, Mackey M. Dynamics and bistability in a reduced model of the lac operon. Chaos 2004, 14(2):279-292. 10.1063/1.1689451, 15189056.
    • (2004) Chaos , vol.14 , Issue.2 , pp. 279-292
    • Yildirim, N.1    Santillan, M.2    Horike, D.3    Mackey, M.4
  • 38
    • 0032496358 scopus 로고    scopus 로고
    • The Biochemical Basis of an All-or-None Cell Fate Switch in Xenopus Oocytes
    • 10.1126/science.280.5365.895, 9572732
    • Ferrell J, James E, Machleder EM. The Biochemical Basis of an All-or-None Cell Fate Switch in Xenopus Oocytes. Science 1998, 280(5365):895-898. 10.1126/science.280.5365.895, 9572732.
    • (1998) Science , vol.280 , Issue.5365 , pp. 895-898
    • Ferrell, J.1    James, E.2    Machleder, E.M.3
  • 39
    • 0842288229 scopus 로고    scopus 로고
    • Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
    • 10.1083/jcb.200308060, 2172246, 14744999
    • Markevich NI, Hoek JB, Kholodenko BN. Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. J Cell Biol 2004, 164(3):353-359. 10.1083/jcb.200308060, 2172246, 14744999.
    • (2004) J Cell Biol , vol.164 , Issue.3 , pp. 353-359
    • Markevich, N.I.1    Hoek, J.B.2    Kholodenko, B.N.3
  • 41
    • 71149116163 scopus 로고    scopus 로고
    • Simple, realistic models of complex biological processes: Positive feedback and bistability in a cell fate switch and a cell cycle oscillator
    • 10.1016/j.febslet.2009.10.068, 19878681
    • Ferrell JE, Pomerening JR, Kim SY, Trunnell NB, Xiong W, Huang CYF, Machleder EM. Simple, realistic models of complex biological processes: Positive feedback and bistability in a cell fate switch and a cell cycle oscillator. FEBS letters 2009, 583(24):3999-4005. 10.1016/j.febslet.2009.10.068, 19878681.
    • (2009) FEBS letters , vol.583 , Issue.24 , pp. 3999-4005
    • Ferrell, J.E.1    Pomerening, J.R.2    Kim, S.Y.3    Trunnell, N.B.4    Xiong, W.5    Huang, C.Y.F.6    Machleder, E.M.7


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