The balance of protein expression and degradation: An ESCRTs point of view

Current Opinion in Cell Biology

Volumn 25, Issue 4, 2013, Pages 489-494

  Babst, Markus ^a   Odorizzi, Greg ^b  

^a UNIVERSITY OF UTAH   (United States)

^b UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE PROTEIN; ESCRT PROTEIN; INITIATION FACTOR 2; MAMMALIAN TARGET OF RAPAMYCIN COMPLEX 1; REV PROTEIN; TRANSCRIPTION FACTOR GCN4; MEMBRANE PROTEIN;

CELL METABOLISM; CELL VACUOLE; GENE EXPRESSION PROFILING; INTRACELLULAR SIGNALING; KWASHIORKOR; LYSOSOME; METABOLIC STRESS; MULTIVESICULAR BODY; NONHUMAN; NUTRIENT LIMITATION; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEIN METABOLISM; PROTEIN PHOSPHORYLATION; PROTEIN SYNTHESIS; REVIEW; RNA BINDING; RNA INTERFERENCE; SACCHAROMYCES CEREVISIAE; STARVATION; TURNOVER TIME; UBIQUITINATION; ANIMAL; CYTOLOGY; ENDOSOME; EUKARYOTIC CELL; HUMAN; METABOLISM; YEAST; ARTICLE; AUTOPHAGY; BIOGENESIS; BIOSYNTHESIS; CATABOLISM; CELL STRESS; CELL SURVIVAL; ENDOCYTOSIS; ENZYME ACTIVITY;

ANIMALS; ENDOSOMAL SORTING COMPLEXES REQUIRED FOR TRANSPORT; ENDOSOMES; EUKARYOTIC CELLS; HUMANS; LYSOSOMES; MEMBRANE PROTEINS; MULTIVESICULAR BODIES; RNA INTERFERENCE; YEASTS;

EID: 84883450693     PISSN: 09550674     EISSN: 18790410     Source Type: Journal    
DOI: 10.1016/j.ceb.2013.05.003     Document Type: Review

References (50)

1. Rabinowitz J.D., White E. Autophagy and metabolism. Science 2010, 330:1344-1348.
2. Yang Z., Klionsky D.J. Eaten alive: a history of macroautophagy. Nat Cell Biol 2010, 12:814-822.
3. Henne W.M., Buchkovich N.J., Emr S.D. The ESCRT pathway. Dev Cell 2011, 21:77-91.
4. Hanson P.I., Cashikar A. Multivesicular body morphogenesis. Annu Rev Cell Dev Biol 2012, 28:337-362.
5. Belgareh-Touze N., Leon S., Erpapazoglou Z., Stawiecka-Mirota M., Urban-Grimal D., Haguenauer-Tsapis R. Versatile role of the yeast ubiquitin ligase Rsp5p in intracellular trafficking. Biochem Soc Trans 2008, 36:791-796.
6. Wegner C.S., Rodahl L.M., Stenmark H. ESCRT proteins and cell signalling. Traffic 2011, 12:1291-1297.
7. Lauwers E., Erpapazoglou Z., Haguenauer-Tsapis R., Andre B. The ubiquitin code of yeast permease trafficking. Trends Cell Biol 2010, 20:196-204.
8. Keener J.M., Babst M. Quality control and substrate-dependent downregulation of the nutrient transporter fur4. Traffic 2013, 14:412-427.
9. Lin C.H., MacGurn J.A., Chu T., Stefan C.J., Emr S.D. Arrestin-related ubiquitin-ligase adaptors regulate endocytosis and protein turnover at the cell surface. Cell 2008, 135:714-725.
10. Nikko E., Pelham H.R. Arrestin-mediated endocytosis of yeast plasma membrane transporters. Traffic 2009, 10:1856-1867.
11. Nikko E., Sullivan J.A., Pelham H.R. Arrestin-like proteins mediate ubiquitination and endocytosis of the yeast metal transporter Smf1. EMBO Rep 2008, 9:1216-1221.
12. Hatakeyama R., Kamiya M., Takahara T., Maeda T. Endocytosis of the aspartic acid/glutamic acid transporter Dip5 is triggered by substrate-dependent recruitment of the Rsp5 ubiquitin ligase via the arrestin-like protein Aly2. Mol Cell Biol 2010, 30:5598-5607.
13. Merhi A., Andre B. Internal amino acids promote Gap1 permease ubiquitylation via TORC1/Npr1/14-3-3-dependent control of the Bul arrestin-like adaptors. Mol Cell Biol 2012, 32:4510-4522.
14. MacGurn J.A., Hsu P.C., Smolka M.B., Emr S.D. TORC1 regulates endocytosis via Npr1-mediated phosphoinhibition of a ubiquitin ligase adaptor. Cell 2011, 147:1104-1117.
15. Becuwe M., Vieira N., Lara D., Gomes-Rezende J., Soares-Cunha C., Casal M., Haguenauer-Tsapis R., Vincent O., Paiva S., Leon S. A molecular switch on an arrestin-like protein relays glucose signaling to transporter endocytosis. J Cell Biol 2012, 196:247-259.
16. Galan J.M., Volland C., Urban-Grimal D., Haguenauer-Tsapis R. The yeast plasma membrane uracil permease is stabilized against stress induced degradation by a point mutation in a cyclin-like "destruction box". Biochem Biophys Res Commun 1994, 201:769-775.
17. Penalver E., Lucero P., Moreno E., Lagunas R. Catabolite inactivation of the maltose transporter in nitrogen-starved yeast could be due to the stimulation of general protein turnover. FEMS Microbiol Lett 1998, 166:317-324.
18. Beck T., Schmidt A., Hall M.N. Starvation induces vacuolar targeting and degradation of the tryptophan permease in yeast. J Cell Biol 1999, 146:1227-1238.
19. Omura F., Kodama Y., Ashikari T. The N-terminal domain of the yeast permease Bap2p plays a role in its degradation. Biochem Biophys Res Commun 2001, 287:1045-1050.
20. Krampe S., Boles E. Starvation-induced degradation of yeast hexose transporter Hxt7p is dependent on endocytosis, autophagy and the terminal sequences of the permease. FEBS Lett 2002, 513:193-196.
21. Jones C.B., Ott E.M., Keener J.M., Curtiss M., Sandrin V., Babst M. Regulation of membrane protein degradation by starvation-response pathways. Traffic 2012, 13:468-482.
22. O'Donnell A.F., Apffel A., Gardner R.G., Cyert M.S. Alpha-arrestins Aly1 and Aly2 regulate intracellular trafficking in response to nutrient signaling. Mol Biol Cell 2010, 21:3552-3566.
23. Vabulas R.M., Hartl F.U. Protein synthesis upon acute nutrient restriction relies on proteasome function. Science 2005, 310:1960-1963.
24. Breitkreutz A., Choi H., Sharom J.R., Boucher L., Neduva V., Larsen B., Lin Z.Y., Breitkreutz B.J., Stark C., Liu G., et al. A global protein kinase and phosphatase interaction network in yeast. Science 2010, 328:1043-1046.
25. Wang X., Proud C.G. Nutrient control of TORC1, a cell-cycle regulator. Trends Cell Biol 2009, 19:260-267.
26. Loewith R., Hall M.N. Target of rapamycin (TOR) in nutrient signaling and growth control. Genetics 2011, 189:1177-1201.
27. Kaouass M., Gamache I., Ramotar D., Audette M., Poulin R. The spermidine transport system is regulated by ligand inactivation, endocytosis, and by the Npr1p Ser/Thr protein kinase in Saccharomyces cerevisiae. J Biol Chem 1998, 273:2109-2117.
28. Martin Y., Gonzalez Y.V., Cabrera E., Rodriguez C., Siverio J.M. Npr1 Ser/Thr protein kinase links nitrogen source quality and carbon availability with the yeast nitrate transporter (Ynt1) levels. J Biol Chem 2011, 286:27225-27235.
29. Peng T., Golub T.R., Sabatini D.M. The immunosuppressant rapamycin mimics a starvation-like signal distinct from amino acid and glucose deprivation. Mol Cell Biol 2002, 22:5575-5584.
30. Dimaano C., Jones C.B., Hanono A., Curtiss M., Babst M. Ist1 regulates vps4 localization and assembly. Mol Biol Cell 2008, 19:465-474.
31. Rue S.M., Mattei S., Saksena S., Emr S.D. Novel Ist1-Did2 complex functions at a late step in multivesicular body sorting. Mol Biol Cell 2008, 19:475-484.
32. Sonenberg N., Hinnebusch A.G. Regulation of translation initiation in eukaryotes: mechanisms and biological targets. Cell 2009, 136:731-745.
33. Hinnebusch A.G. Translational regulation of GCN4 and the general amino acid control of yeast. Annu Rev Microbiol 2005, 59:407-450.
34. Zhang F., Gaur N.A., Hasek J., Kim S.J., Qiu H., Swanson M.J., Hinnebusch A.G. Disrupting vesicular trafficking at the endosome attenuates transcriptional activation by Gcn4. Mol Cell Biol 2008, 28:6796-6818.
35. Puria R., Zurita-Martinez S.A., Cardenas M.E. Nuclear translocation of Gln3 in response to nutrient signals requires Golgi-to-endosome trafficking in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 2008, 105:7194-7199.
36. Flinn R.J., Yan Y., Goswami S., Parker P.J., Backer J.M. The late endosome is essential for mTORC1 signaling. Mol Biol Cell 2010, 21:833-841.
37. Sturgill T.W., Cohen A., Diefenbacher M., Trautwein M., Martin D.E., Hall M.N. TOR1 and TOR2 have distinct locations in live cells. Eukaryot Cell 2008, 7:1819-1830.
38. Sancak Y., Bar-Peled L., Zoncu R., Markhard A.L., Nada S., Sabatini D.M. Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids. Cell 2010, 141:290-303.
39. Ogmundsdottir M.H., Heublein S., Kazi S., Reynolds B., Visvalingam S.M., Shaw M.K., Goberdhan D.C. Proton-assisted amino acid transporter PAT1 complexes with Rag GTPases and activates TORC1 on late endosomal and lysosomal membranes. PLoS ONE 2012, 7:e36616.
40. Donaton M.C., Holsbeeks I., Lagatie O., Van Zeebroeck G., Crauwels M., Winderickx J., Thevelein J.M. The Gap1 general amino acid permease acts as an amino acid sensor for activation of protein kinase A targets in the yeast Saccharomyces cerevisiae. Mol Microbiol 2003, 50:911-929.
41. Zoncu R., Bar-Peled L., Efeyan A., Wang S., Sancak Y., Sabatini D.M. mTORC1 senses lysosomal amino acids through an inside-out mechanism that requires the vacuolar H(+)-ATPase. Science 2011, 334:678-683.
42. Czech B., Hannon G.J. Small RNA sorting: matchmaking for Argonautes. Nat Rev Genet 2011, 12:19-31.
43. Gibbings D.J., Ciaudo C., Erhardt M., Voinnet O. Multivesicular bodies associate with components of miRNA effector complexes and modulate miRNA activity. Nat Cell Biol 2009, 11:1143-1149.
44. Lee Y.S., Pressman S., Andress A.P., Kim K., White J.L., Cassidy J.J., Li X., Lubell K., Lim do H., Cho I.S., et al. Silencing by small RNAs is linked to endosomal trafficking. Nat Cell Biol 2009, 11:1150-1156.
45. Harris D.A., Kim K., Nakahara K., Vasquez-Doorman C., Carthew R.W. Cargo sorting to lysosome-related organelles regulates siRNA-mediated gene silencing. J Cell Biol 2011, 194:77-87.
46. Valadi H., Ekstrom K., Bossios A., Sjostrand M., Lee J.J., Lotvall J.O. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat Cell Biol 2007, 9:654-659.
47. Camussi G., Deregibus M.C., Bruno S., Cantaluppi V., Biancone L. Exosomes/microvesicles as a mechanism of cell-to-cell communication. Kidney Int 2010, 78:838-848.
48. Gibbings D., Voinnet O. Control of RNA silencing and localization by endolysosomes. Trends Cell Biol 2010, 20:491-501.
49. van den Boorn J.G., Dassler J., Coch C., Schlee M., Hartmann G. Exosomes as nucleic acid nanocarriers. Adv Drug Deliv Rev 2012, 65:331-335.
50. Irion U., St. Johnston D. Bicoid RNA localization requires specific binding of an endosomal sorting complex. Nature 2007, 445:554-558.