메뉴 건너뛰기




Volumn 9, Issue 8, 2013, Pages

Transcriptional Regulation of Lineage Commitment - A Stochastic Model of Cell Fate Decisions

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; LEARNING SYSTEMS; MONTE CARLO METHODS; PHYSIOLOGICAL MODELS; REGRESSION ANALYSIS; STOCHASTIC SYSTEMS; TIME SERIES; TRANSCRIPTION;

EID: 84883385125     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003197     Document Type: Article
Times cited : (43)

References (50)
  • 2
    • 67650319009 scopus 로고    scopus 로고
    • Single-molecule approaches to stochastic gene expression
    • Raj A, van Oudenaarden A, (2009) Single-molecule approaches to stochastic gene expression. Annual review of biophysics 38: 255-70.
    • (2009) Annual Review of Biophysics , vol.38 , pp. 255-270
    • Raj, A.1    van Oudenaarden, A.2
  • 3
    • 77952915049 scopus 로고    scopus 로고
    • Functional heterogeneity of embryonic stem cells revealed through translational amplification of an early endodermal transcript
    • Canham MA, Sharov AA, Ko MSH, Brickman JM, (2010) Functional heterogeneity of embryonic stem cells revealed through translational amplification of an early endodermal transcript. PLoS biology 8: e1000379.
    • (2010) PLoS Biology , vol.8
    • Canham, M.A.1    Sharov, A.A.2    Ko, M.S.H.3    Brickman, J.M.4
  • 4
    • 37549002155 scopus 로고    scopus 로고
    • Nanog safeguards pluripotency and mediates germline development
    • Chambers I, Silva J, Colby D, Nichols J, Nijmeijer B, et al. (2007) Nanog safeguards pluripotency and mediates germline development. Nature 450: 1230-4.
    • (2007) Nature , vol.450 , pp. 1230-1234
    • Chambers, I.1    Silva, J.2    Colby, D.3    Nichols, J.4    Nijmeijer, B.5
  • 5
    • 53049092465 scopus 로고    scopus 로고
    • Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states
    • Hayashi K, Lopes SMCDS, Tang F, Surani MA, (2008) Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states. Cell stem cell 3: 391-401.
    • (2008) Cell Stem Cell , vol.3 , pp. 391-401
    • Hayashi, K.1    Lopes, S.M.C.D.S.2    Tang, F.3    Surani, M.A.4
  • 6
    • 70450193138 scopus 로고    scopus 로고
    • A continuum of cell states spans pluripotency and lineage commitment in human embryonic stem cells
    • Hough SR, Laslett AL, Grimmond SB, Kolle G, Pera MF, (2009) A continuum of cell states spans pluripotency and lineage commitment in human embryonic stem cells. PloS one 4: e7708.
    • (2009) PloS One , vol.4
    • Hough, S.R.1    Laslett, A.L.2    Grimmond, S.B.3    Kolle, G.4    Pera, M.F.5
  • 7
    • 68049139696 scopus 로고    scopus 로고
    • Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells
    • Kalmar T, Lim C, Hayward P, Muñoz Descalzo S, Nichols J, et al. (2009) Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells. PLoS biology 7: e1000149.
    • (2009) PLoS Biology , vol.7
    • Kalmar, T.1    Lim, C.2    Hayward, P.3    Muñoz Descalzo, S.4    Nichols, J.5
  • 8
    • 79959385536 scopus 로고    scopus 로고
    • An information theoretic, microuidic-based single cell analysis permits identification of subpopulations among putatively homogeneous stem cells
    • Glotzbach JP, Januszyk M, Vial IN, Wong V, Gelbard A, et al. (2011) An information theoretic, microuidic-based single cell analysis permits identification of subpopulations among putatively homogeneous stem cells. PLoS One 6: e21211.
    • (2011) PLoS One , vol.6
    • Glotzbach, J.P.1    Januszyk, M.2    Vial, I.N.3    Wong, V.4    Gelbard, A.5
  • 9
  • 10
    • 84876471008 scopus 로고    scopus 로고
    • Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis
    • Moignard V, Macaulay IC, Swiers G, Buettner F, Schütte J, et al. (2013) Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis. Nature Cell Biology 15: 363-72.
    • (2013) Nature Cell Biology , vol.15 , pp. 363-372
    • Moignard, V.1    Macaulay, I.C.2    Swiers, G.3    Buettner, F.4    Schütte, J.5
  • 11
    • 25444468618 scopus 로고    scopus 로고
    • Noise in gene expression: origins, consequences, and control
    • Raser JM, O'Shea EK, (2005) Noise in gene expression: origins, consequences, and control. Science (New York, NY) 309: 2010-3.
    • (2005) Science (New York, NY) , vol.309 , pp. 2010-2013
    • Raser, J.M.1    O'Shea, E.K.2
  • 16
    • 80051716158 scopus 로고    scopus 로고
    • Commitment to a cellular transition precedes Genome-wide transcriptional change
    • Eser U, Falleur-Fettig M, Johnson A, Skotheim JM, (2011) Commitment to a cellular transition precedes Genome-wide transcriptional change. Molecular Cell 43: 515-27.
    • (2011) Molecular Cell , vol.43 , pp. 515-527
    • Eser, U.1    Falleur-Fettig, M.2    Johnson, A.3    Skotheim, J.M.4
  • 17
    • 44349162752 scopus 로고    scopus 로고
    • Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
    • Chang HH, Hemberg M, Barahona M, Ingber DE, Huang S, (2008) Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453: 544-7.
    • (2008) Nature , vol.453 , pp. 544-547
    • Chang, H.H.1    Hemberg, M.2    Barahona, M.3    Ingber, D.E.4    Huang, S.5
  • 18
    • 0032527272 scopus 로고    scopus 로고
    • Do stem cells play dice?
    • discussion 352
    • Enver T, Heyworth CM, Dexter TM, (1998) Do stem cells play dice? Blood 92: 348-51; discussion 352.
    • (1998) Blood , vol.92 , pp. 348-351
    • Enver, T.1    Heyworth, C.M.2    Dexter, T.M.3
  • 19
    • 74849102061 scopus 로고    scopus 로고
    • Instruction of lineage choice by hematopoietic cytokines
    • Rieger MA, Schroeder T, (2009) Instruction of lineage choice by hematopoietic cytokines. Cell cycle (Georgetown, Tex) 8: 4019-20.
    • (2009) Cell Cycle (Georgetown, Tex) , vol.8 , pp. 4019-4020
    • Rieger, M.A.1    Schroeder, T.2
  • 20
    • 43749084847 scopus 로고    scopus 로고
    • Imaging stem-cell-driven regeneration in mammals
    • Schroeder T, (2008) Imaging stem-cell-driven regeneration in mammals. Nature 453: 345-51.
    • (2008) Nature , vol.453 , pp. 345-351
    • Schroeder, T.1
  • 22
  • 23
    • 0035478854 scopus 로고    scopus 로고
    • Random Forests
    • Breiman L, (2001) Random Forests. Machine Learning 45: 5-32.
    • (2001) Machine Learning , vol.45 , pp. 5-32
    • Breiman, L.1
  • 25
    • 0028022916 scopus 로고
    • An early haematopoietic defect in mice lacking the transcription factor GATA-2
    • Tsai FY, Keller G, Kuo FC, Weiss M, Chen J, et al. (1994) An early haematopoietic defect in mice lacking the transcription factor GATA-2. Nature 371: 221-6.
    • (1994) Nature , vol.371 , pp. 221-226
    • Tsai, F.Y.1    Keller, G.2    Kuo, F.C.3    Weiss, M.4    Chen, J.5
  • 26
    • 22144476881 scopus 로고    scopus 로고
    • Haploinsufficiency of GATA-2 perturbs adult hematopoietic stem-cell homeostasis
    • Rodrigues NP, Janzen V, Forkert R, Dombkowski DM, Boyd AS, et al. (2005) Haploinsufficiency of GATA-2 perturbs adult hematopoietic stem-cell homeostasis. Blood 106: 477-84.
    • (2005) Blood , vol.106 , pp. 477-484
    • Rodrigues, N.P.1    Janzen, V.2    Forkert, R.3    Dombkowski, D.M.4    Boyd, A.S.5
  • 27
    • 63849118537 scopus 로고    scopus 로고
    • High GATA-2 expression inhibits human hematopoietic stem and progenitor cell function by effects on cell cycle
    • Tipping AJ, Pina C, Castor A, Hong D, Rodrigues NP, et al. (2009) High GATA-2 expression inhibits human hematopoietic stem and progenitor cell function by effects on cell cycle. Blood 113: 2661-72.
    • (2009) Blood , vol.113 , pp. 2661-2672
    • Tipping, A.J.1    Pina, C.2    Castor, A.3    Hong, D.4    Rodrigues, N.P.5
  • 28
    • 0030954167 scopus 로고    scopus 로고
    • Multilineage gene expression precedes commitment in the hemopoietic system
    • Hu M, Krause D, Greaves M, Sharkis S, Dexter M, et al. (1997) Multilineage gene expression precedes commitment in the hemopoietic system. Genes & development 11: 774-85.
    • (1997) Genes & Development , vol.11 , pp. 774-785
    • Hu, M.1    Krause, D.2    Greaves, M.3    Sharkis, S.4    Dexter, M.5
  • 29
    • 0036070180 scopus 로고    scopus 로고
    • Myeloid or lymphoid promiscuity as a critical step in hematopoietic lineage commitment
    • Miyamoto T, Iwasaki H, Reizis B, Ye M, Graf T, et al. (2002) Myeloid or lymphoid promiscuity as a critical step in hematopoietic lineage commitment. Developmental cell 3: 137-47.
    • (2002) Developmental Cell , vol.3 , pp. 137-147
    • Miyamoto, T.1    Iwasaki, H.2    Reizis, B.3    Ye, M.4    Graf, T.5
  • 31
    • 0028066779 scopus 로고
    • PEBP2/CBF, the murine homolog of the human myeloid AML1 and PEBP2 beta/CBF beta proto-oncoproteins, regulates the murine myeloperoxidase and neutrophil elastase genes in immature myeloid cells
    • Nuchprayoon I, Meyers S, Scott LM, Suzow J, Hiebert S, et al. (1994) PEBP2/CBF, the murine homolog of the human myeloid AML1 and PEBP2 beta/CBF beta proto-oncoproteins, regulates the murine myeloperoxidase and neutrophil elastase genes in immature myeloid cells. Molecular and cellular biology 14: 5558-68.
    • (1994) Molecular and Cellular Biology , vol.14 , pp. 5558-5568
    • Nuchprayoon, I.1    Meyers, S.2    Scott, L.M.3    Suzow, J.4    Hiebert, S.5
  • 32
    • 0037099497 scopus 로고    scopus 로고
    • Transcription factor-mediated lineage switching reveals plasticity in primary committed progenitor cells
    • Heyworth C, Pearson S, May G, Enver T, (2002) Transcription factor-mediated lineage switching reveals plasticity in primary committed progenitor cells. The EMBO journal 21: 3770-81.
    • (2002) The EMBO Journal , vol.21 , pp. 3770-3781
    • Heyworth, C.1    Pearson, S.2    May, G.3    Enver, T.4
  • 33
    • 0141455931 scopus 로고    scopus 로고
    • GATA-1 converts lymphoid and myelomonocytic progenitors into the megakaryocyte/erythrocyte lineages
    • Iwasaki H, Mizuno Si, Wells RA, Cantor AB, Watanabe S, et al. (2003) GATA-1 converts lymphoid and myelomonocytic progenitors into the megakaryocyte/erythrocyte lineages. Immunity 19: 451-62.
    • (2003) Immunity , vol.19 , pp. 451-462
    • Iwasaki, H.1    Mizuno, S.2    Wells, R.A.3    Cantor, A.B.4    Watanabe, S.5
  • 34
    • 84857192635 scopus 로고    scopus 로고
    • FOG-1 and GATA-1 act sequentially to specify definitive megakaryocytic and erythroid progenitors
    • Mancini E, Sanjuan-Pla A, Luciani L, Moore S, Grover A, et al. (2012) FOG-1 and GATA-1 act sequentially to specify definitive megakaryocytic and erythroid progenitors. The EMBO Journal 31: 351-65.
    • (2012) The EMBO Journal , vol.31 , pp. 351-365
    • Mancini, E.1    Sanjuan-Pla, A.2    Luciani, L.3    Moore, S.4    Grover, A.5
  • 35
    • 0028894494 scopus 로고
    • Development of hematopoietic cells lacking transcription factor GATA-1
    • Pevny L, Lin CS, D'Agati V, Simon MC, Orkin SH, et al. (1995) Development of hematopoietic cells lacking transcription factor GATA-1. Development 121: 163-72.
    • (1995) Development , vol.121 , pp. 163-172
    • Pevny, L.1    Lin, C.S.2    D'Agati, V.3    Simon, M.C.4    Orkin, S.H.5
  • 36
    • 34247092453 scopus 로고    scopus 로고
    • Interleukin-3 and erythropoietin cooperate in the regulation of the expression of erythroid-specific transcription factors during erythroid differentiation
    • Ghinassi B, Verrucci M, Jelicic K, Di Noia A, Migliaccio G, et al. (2007) Interleukin-3 and erythropoietin cooperate in the regulation of the expression of erythroid-specific transcription factors during erythroid differentiation. Experimental hematology 35: 735-47.
    • (2007) Experimental Hematology , vol.35 , pp. 735-747
    • Ghinassi, B.1    Verrucci, M.2    Jelicic, K.3    Di Noia, A.4    Migliaccio, G.5
  • 39
  • 42
    • 77956520011 scopus 로고    scopus 로고
    • Functional roles for noise in genetic circuits
    • Eldar A, Elowitz MB, (2010) Functional roles for noise in genetic circuits. Nature 467: 167-73.
    • (2010) Nature , vol.467 , pp. 167-173
    • Eldar, A.1    Elowitz, M.B.2
  • 43
    • 79952638264 scopus 로고    scopus 로고
    • Cellular decision making and biological noise: from microbes to mammals
    • Balázsi G, van Oudenaarden A, Collins JJ, (2011) Cellular decision making and biological noise: from microbes to mammals. Cell 144: 910-25.
    • (2011) Cell , vol.144 , pp. 910-925
    • Balázsi, G.1    van Oudenaarden, A.2    Collins, J.J.3
  • 45
    • 79952323055 scopus 로고    scopus 로고
    • Defining cell populations with single-cell gene expression profiling: correlations and identification of astrocyte subpopulations
    • Ståhlberg A, Andersson D, Aurelius J, Faiz M, Pekna M, et al. (2011) Defining cell populations with single-cell gene expression profiling: correlations and identification of astrocyte subpopulations. Nucleic acids research 39: e24.
    • (2011) Nucleic Acids Research , vol.39
    • Ståhlberg, A.1    Andersson, D.2    Aurelius, J.3    Faiz, M.4    Pekna, M.5
  • 46
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: new features for data integration and network visualization
    • Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T, (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27: 431-2.
    • (2011) Bioinformatics , vol.27 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2    Ruscheinski, J.3    Wang, P.L.4    Ideker, T.5
  • 47
    • 0030211964 scopus 로고    scopus 로고
    • Bagging Predictors
    • Breiman L, (1996) Bagging Predictors. Machine Learning 24: 123-40.
    • (1996) Machine Learning , vol.24 , pp. 123-140
    • Breiman, L.1
  • 49
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie DT, (1977) Exact stochastic simulation of coupled chemical reactions. The Journal of Physical Chemistry 81: 23402361.
    • (1977) The Journal of Physical Chemistry , vol.81 , pp. 23402361
    • Gillespie, D.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.