메뉴 건너뛰기




Volumn 9, Issue 8, 2013, Pages

Chikungunya Virus 3′ Untranslated Region: Adaptation to Mosquitoes and a Population Bottleneck as Major Evolutionary Forces

Author keywords

[No Author keywords available]

Indexed keywords

3' UNTRANSLATED REGION; ADAPTATION; ANIMAL CELL; ARTICLE; CHIKUNGUNYA ALPHAVIRUS; GENE EXPRESSION; GENETIC DRIFT; GENETIC VARIABILITY; HUMAN; HUMAN CELL; MOLECULAR CLONING; MOSQUITO; MOUSE; NONHUMAN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; VERO CELL; VIRUS REPLICATION; ALPHAVIRUS INFECTION; ANIMAL; ANOPHELES; ASIA; CELL LINE; CHIKUNGUNYA; GENETICS; METABOLISM; MOLECULAR EVOLUTION; MUTATION; TRANSMISSION; VIROLOGY;

EID: 84883340196     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1003591     Document Type: Article
Times cited : (77)

References (61)
  • 1
    • 37849052513 scopus 로고    scopus 로고
    • A single mutation in chikungunya virus affects vector specificity and epidemic potential
    • Tsetsarkin KA, Vanlandingham DL, McGee CE, Higgs S, (2007) A single mutation in chikungunya virus affects vector specificity and epidemic potential. PLoS Pathog 3: e201.
    • (2007) PLoS Pathog , vol.3
    • Tsetsarkin, K.A.1    Vanlandingham, D.L.2    McGee, C.E.3    Higgs, S.4
  • 2
    • 34548333546 scopus 로고    scopus 로고
    • A single positively selected West Nile viral mutation confers increased virogenesis in American crows
    • Brault AC, Huang CY, Langevin SA, Kinney RM, Bowen RA, et al. (2007) A single positively selected West Nile viral mutation confers increased virogenesis in American crows. Nat Genet 39: 1162-1166.
    • (2007) Nat Genet , vol.39 , pp. 1162-1166
    • Brault, A.C.1    Huang, C.Y.2    Langevin, S.A.3    Kinney, R.M.4    Bowen, R.A.5
  • 3
    • 0025255251 scopus 로고
    • Mutagenesis of the 3′ nontranslated region of Sindbis virus
    • Kuhn RJ, Hong Z, Strauss JH, (1990) Mutagenesis of the 3′ nontranslated region of Sindbis virus. RNA J Virol 64: 1465-1476.
    • (1990) RNA J Virol , vol.64 , pp. 1465-1476
    • Kuhn, R.J.1    Hong, Z.2    Strauss, J.H.3
  • 4
    • 0026443665 scopus 로고
    • Attenuation of Sindbis virus neurovirulence by using defined mutations in nontranslated regions of the genome
    • Kuhn RJ, Griffin DE, Zhang H, Niesters HJ, Strauss JH, (1992) Attenuation of Sindbis virus neurovirulence by using defined mutations in nontranslated regions of the genome. RNA J Virol 66: 7121-7127.
    • (1992) RNA J Virol , vol.66 , pp. 7121-7127
    • Kuhn, R.J.1    Griffin, D.E.2    Zhang, H.3    Niesters, H.J.4    Strauss, J.H.5
  • 5
    • 0029893436 scopus 로고    scopus 로고
    • Dengue type 4 virus mutants containing deletions in the 30 noncoding region of the RNA genome: Analysis of growth restriction in cell culture and altered viremia pattern and immunogenicity in rhesus monkeys
    • Men R, Bray M, Clark D, Chanock RM, Lai CJ, (1996) Dengue type 4 virus mutants containing deletions in the 30 noncoding region of the RNA genome: Analysis of growth restriction in cell culture and altered viremia pattern and immunogenicity in rhesus monkeys. J Virol 70: 3930-3937.
    • (1996) J Virol , vol.70 , pp. 3930-3937
    • Men, R.1    Bray, M.2    Clark, D.3    Chanock, R.M.4    Lai, C.J.5
  • 6
    • 0031887847 scopus 로고    scopus 로고
    • Spontaneous and engineered deletions in the 3′ noncoding region of tick-borne encephalitis virus: construction of highly attenuated mutants of a flavivirus
    • Mandl CW, Holzmann H, Meixner T, Rauscher S, et al. (1998) Spontaneous and engineered deletions in the 3′ noncoding region of tick-borne encephalitis virus: construction of highly attenuated mutants of a flavivirus. J Virol 72: 2132-2140.
    • (1998) J Virol , vol.72 , pp. 2132-2140
    • Mandl, C.W.1    Holzmann, H.2    Meixner, T.3    Rauscher, S.4
  • 7
    • 0141570502 scopus 로고    scopus 로고
    • Functional analysis of mosquito-borne flavivirus conserved sequence elements within 3′ untranslated region of West Nile virus by use of a reporting replicon that differentiates between viral translation and RNA replication
    • Lo MK, Tilgner M, Bernard KA, Shi PY, (2003) Functional analysis of mosquito-borne flavivirus conserved sequence elements within 3′ untranslated region of West Nile virus by use of a reporting replicon that differentiates between viral translation and RNA replication. J Virol 77: 10004-10014.
    • (2003) J Virol , vol.77 , pp. 10004-10014
    • Lo, M.K.1    Tilgner, M.2    Bernard, K.A.3    Shi, P.Y.4
  • 8
    • 0033809466 scopus 로고    scopus 로고
    • Alphavirus RNA genome repair and evolution: molecular characterization of infectious sindbis virus isolates lacking a known conserved motif at the 3′ end of the genome
    • George J, Raju R, (2000) Alphavirus RNA genome repair and evolution: molecular characterization of infectious sindbis virus isolates lacking a known conserved motif at the 3′ end of the genome. J Virol 74: 9776-9785.
    • (2000) J Virol , vol.74 , pp. 9776-9785
    • George, J.1    Raju, R.2
  • 9
    • 0020490544 scopus 로고
    • The 3′-non-coding regions of alphavirus RNAs contain repeating sequences
    • Ou JH, Trent DW, Strauss JH, (1982) The 3′-non-coding regions of alphavirus RNAs contain repeating sequences. J Mol Biol 156: 719-730.
    • (1982) J Mol Biol , vol.156 , pp. 719-730
    • Ou, J.H.1    Trent, D.W.2    Strauss, J.H.3
  • 10
    • 0032484472 scopus 로고    scopus 로고
    • The alphavirus 3′-nontranslated region: size heterogeneity and arrangement of repeated sequence elements
    • Pfeffer M, Kinney RM, Kaaden OR, (1998) The alphavirus 3′-nontranslated region: size heterogeneity and arrangement of repeated sequence elements. Virology 240: 100-108.
    • (1998) Virology , vol.240 , pp. 100-108
    • Pfeffer, M.1    Kinney, R.M.2    Kaaden, O.R.3
  • 11
    • 33750231544 scopus 로고    scopus 로고
    • Direct repeats in the 3′ untranslated regions of mosquito-borne flaviviruses: possible implications for virus transmission
    • Gritsun TS, Gould EA, (2006) Direct repeats in the 3′ untranslated regions of mosquito-borne flaviviruses: possible implications for virus transmission. J Gen Virol 87: 3297-3305.
    • (2006) J Gen Virol , vol.87 , pp. 3297-3305
    • Gritsun, T.S.1    Gould, E.A.2
  • 12
    • 33845988056 scopus 로고    scopus 로고
    • Origin and evolution of 3′UTR of flaviviruses: long direct repeats as a basis for the formation of secondary structures and their significance for virus transmission
    • Gritsun TS, Gould EA, (2007) Origin and evolution of 3′UTR of flaviviruses: long direct repeats as a basis for the formation of secondary structures and their significance for virus transmission. Adv Virus Res 69: 203-248.
    • (2007) Adv Virus Res , vol.69 , pp. 203-248
    • Gritsun, T.S.1    Gould, E.A.2
  • 13
    • 33745269547 scopus 로고    scopus 로고
    • The 3′ untranslated region of tick-borne flaviviruses originated by the duplication of long repeat sequences within the open reading frame
    • Gritsun TS, Gould EA, (2006) The 3′ untranslated region of tick-borne flaviviruses originated by the duplication of long repeat sequences within the open reading frame. Virology 350: 269-275.
    • (2006) Virology , vol.350 , pp. 269-275
    • Gritsun, T.S.1    Gould, E.A.2
  • 14
    • 0030746980 scopus 로고    scopus 로고
    • Secondary structure of the 3′ untranslated region of flaviviruses: similarities and differences
    • Proutski V, Gould EA, Holmes EC, (1997) Secondary structure of the 3′ untranslated region of flaviviruses: similarities and differences. Nucleic Acids Res 25: 1194-1202.
    • (1997) Nucleic Acids Res , vol.25 , pp. 1194-1202
    • Proutski, V.1    Gould, E.A.2    Holmes, E.C.3
  • 15
    • 0027255003 scopus 로고
    • Multiple binding sites for cellular proteins in the 3′ end of Sindbis alphavirus minus-sense RNA
    • Pardigon N, Lenches E, Strauss JH, (1993) Multiple binding sites for cellular proteins in the 3′ end of Sindbis alphavirus minus-sense RNA. J Virol 67: 5003-5011.
    • (1993) J Virol , vol.67 , pp. 5003-5011
    • Pardigon, N.1    Lenches, E.2    Strauss, J.H.3
  • 16
    • 37849019535 scopus 로고    scopus 로고
    • The 3′ untranslated region of sindbis virus represses deadenylation of viral transcripts in mosquito and Mammalian cells
    • Garneau NL, Sokoloski KJ, Opyrchal M, Neff CP, Wilusz CJ, et al. (2008) The 3′ untranslated region of sindbis virus represses deadenylation of viral transcripts in mosquito and Mammalian cells. J Virol 82: 880-892.
    • (2008) J Virol , vol.82 , pp. 880-892
    • Garneau, N.L.1    Sokoloski, K.J.2    Opyrchal, M.3    Neff, C.P.4    Wilusz, C.J.5
  • 17
    • 77956312311 scopus 로고    scopus 로고
    • Sindbis virus usurps the cellular HuR protein to stabilize its transcripts and promote productive infections in mammalian and mosquito cells
    • Sokoloski KJ, Dickson AM, Chaskey EL, Garneau NL, Wilusz CJ, et al. (2010) Sindbis virus usurps the cellular HuR protein to stabilize its transcripts and promote productive infections in mammalian and mosquito cells. Cell Host Microbe 8: 196-207.
    • (2010) Cell Host Microbe , vol.8 , pp. 196-207
    • Sokoloski, K.J.1    Dickson, A.M.2    Chaskey, E.L.3    Garneau, N.L.4    Wilusz, C.J.5
  • 18
    • 84867802877 scopus 로고    scopus 로고
    • Dephosphorylating of HuR protein during alphavirus infection is associated with HuR relocalization to the cytoplasm
    • Dickson AM, Anderson JR, Barnhart MD, Sokoloski KJ, Oko L, et al. (2012) Dephosphorylating of HuR protein during alphavirus infection is associated with HuR relocalization to the cytoplasm. J Biol Chem 287: 36229-36238.
    • (2012) J Biol Chem , vol.287 , pp. 36229-36238
    • Dickson, A.M.1    Anderson, J.R.2    Barnhart, M.D.3    Sokoloski, K.J.4    Oko, L.5
  • 19
    • 79955780170 scopus 로고    scopus 로고
    • Functional interaction between cellular p100 and the dengue virus 3′ UTR
    • Lei Y, Huang Y, Zhang H, Yu L, Zhang M, Dayton A, (2011) Functional interaction between cellular p100 and the dengue virus 3′ UTR. J Gen Virol 92: 796-806.
    • (2011) J Gen Virol , vol.92 , pp. 796-806
    • Lei, Y.1    Huang, Y.2    Zhang, H.3    Yu, L.4    Zhang, M.5    Dayton, A.6
  • 20
    • 84858421932 scopus 로고    scopus 로고
    • West Nile virus encodes a microRNA-like small RNA in the 3′ untranslated region which up-regulates GATA4 mRNA and facilitates virus replication in mosquito cells
    • Hussain M, Torres S, Schnettler E, Funk A, Grundhoff A, et al. (2012) West Nile virus encodes a microRNA-like small RNA in the 3′ untranslated region which up-regulates GATA4 mRNA and facilitates virus replication in mosquito cells. Nucleic Acids Res 40: 2210-2023.
    • (2012) Nucleic Acids Res , vol.40 , pp. 2023-2210
    • Hussain, M.1    Torres, S.2    Schnettler, E.3    Funk, A.4    Grundhoff, A.5
  • 21
    • 57049096375 scopus 로고    scopus 로고
    • A highly structured, nuclease-resistant, noncoding RNA produced by flaviviruses is required for pathogenicity
    • Pijlman GP, Funk A, Kondratieva N, Leung J, Torres S, et al. (2008) A highly structured, nuclease-resistant, noncoding RNA produced by flaviviruses is required for pathogenicity. Cell Host Microbe 4: 579-591.
    • (2008) Cell Host Microbe , vol.4 , pp. 579-591
    • Pijlman, G.P.1    Funk, A.2    Kondratieva, N.3    Leung, J.4    Torres, S.5
  • 22
    • 77957935535 scopus 로고    scopus 로고
    • An RNA pseudoknot is required for production of yellow fever virus subgenomic RNA by the host nuclease XRN1
    • Silva PA, Pereira CF, Dalebout TJ, Spaan WJ, Bredenbeek PJ, (2010) An RNA pseudoknot is required for production of yellow fever virus subgenomic RNA by the host nuclease XRN1. J Virol 84: 11395-11406.
    • (2010) J Virol , vol.84 , pp. 11395-11406
    • Silva, P.A.1    Pereira, C.F.2    Dalebout, T.J.3    Spaan, W.J.4    Bredenbeek, P.J.5
  • 23
    • 77957966906 scopus 로고    scopus 로고
    • RNA structures required for production of subgenomic flavivirus RNA
    • Funk A, Truong K, Nagasaki T, Torres S, Floden N, et al. (2010) RNA structures required for production of subgenomic flavivirus RNA. J Virol 84: 11407-11417.
    • (2010) J Virol , vol.84 , pp. 11407-11417
    • Funk, A.1    Truong, K.2    Nagasaki, T.3    Torres, S.4    Floden, N.5
  • 24
    • 80055047268 scopus 로고    scopus 로고
    • Small noncoding RNA modulates Japanese encephalitis virus replication and translation in trans
    • Fan YH, Nadar M, Chen CC, Weng CC, Lin YT, et al. (2011) Small noncoding RNA modulates Japanese encephalitis virus replication and translation in trans. Virol J 8: 492.
    • (2011) Virol J , vol.8 , pp. 492
    • Fan, Y.H.1    Nadar, M.2    Chen, C.C.3    Weng, C.C.4    Lin, Y.T.5
  • 25
    • 84867669809 scopus 로고    scopus 로고
    • A noncoding RNA produced by arthropod-borne flaviviruses inhibits the cellular exoribonuclease XRN1 and alters host mRNA stability
    • Moon SL, Anderson JR, Kumagai Y, Wilusz CJ, Akira S, et al. (2012) A noncoding RNA produced by arthropod-borne flaviviruses inhibits the cellular exoribonuclease XRN1 and alters host mRNA stability. RNA 18: 2029-2040.
    • (2012) RNA , vol.18 , pp. 2029-2040
    • Moon, S.L.1    Anderson, J.R.2    Kumagai, Y.3    Wilusz, C.J.4    Akira, S.5
  • 26
    • 84861312740 scopus 로고    scopus 로고
    • West Nile virus noncoding subgenomic RNA contributes to viral evasion of the type I interferon-mediated antiviral response
    • Schuessler A, Funk A, Lazear HM, Cooper DA, Torres S, et al. (2012) West Nile virus noncoding subgenomic RNA contributes to viral evasion of the type I interferon-mediated antiviral response. J Virol 86: 5708-5718.
    • (2012) J Virol , vol.86 , pp. 5708-5718
    • Schuessler, A.1    Funk, A.2    Lazear, H.M.3    Cooper, D.A.4    Torres, S.5
  • 27
    • 84870716729 scopus 로고    scopus 로고
    • Noncoding flavivirus RNA displays RNA interference suppressor activity in insect and Mammalian cells
    • Schnettler E, Sterken MG, Leung JY, Metz SW, Geertsema C, et al. (2012) Noncoding flavivirus RNA displays RNA interference suppressor activity in insect and Mammalian cells. J Virol 86: 13486-13500.
    • (2012) J Virol , vol.86 , pp. 13486-13500
    • Schnettler, E.1    Sterken, M.G.2    Leung, J.Y.3    Metz, S.W.4    Geertsema, C.5
  • 28
    • 77953297262 scopus 로고    scopus 로고
    • Genome-scale phylogenetic analyses of chikungunya virus reveal independent emergences of recent epidemics and various evolutionary rates
    • Volk SM, Chen R, Tsetsarkin KA, Adams AP, Garcia TI, et al. (2010) Genome-scale phylogenetic analyses of chikungunya virus reveal independent emergences of recent epidemics and various evolutionary rates. J Virol 84: 6497-6504.
    • (2010) J Virol , vol.84 , pp. 6497-6504
    • Volk, S.M.1    Chen, R.2    Tsetsarkin, K.A.3    Adams, A.P.4    Garcia, T.I.5
  • 31
    • 16244413640 scopus 로고    scopus 로고
    • Requirements at the 3′ end of the sindbis virus genome for efficient synthesis of minus-strand RNA
    • Hardy RW, Rice CM, (2005) Requirements at the 3′ end of the sindbis virus genome for efficient synthesis of minus-strand RNA. J Virol 79: 4630-4639.
    • (2005) J Virol , vol.79 , pp. 4630-4639
    • Hardy, R.W.1    Rice, C.M.2
  • 32
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 33
    • 0029025720 scopus 로고
    • An APL-programmed Genetic Algorithm for the Prediction of RNA Secondary Structure
    • van Batenburg FHD, Gultyaev AP, Pleij CWA, (1995) An APL-programmed Genetic Algorithm for the Prediction of RNA Secondary Structure. J Theor Biol 174: 269-280.
    • (1995) J Theor Biol , vol.174 , pp. 269-280
    • van Batenburg, F.H.D.1    Gultyaev, A.P.2    Pleij, C.W.A.3
  • 34
    • 0036301332 scopus 로고    scopus 로고
    • Secondary Structure Prediction for Aligned RNA Sequences
    • Hofacker IL, Fekete M, Stadler PF, (2002) Secondary Structure Prediction for Aligned RNA Sequences. J Mol Biol 319: 1059-1066.
    • (2002) J Mol Biol , vol.319 , pp. 1059-1066
    • Hofacker, I.L.1    Fekete, M.2    Stadler, P.F.3
  • 36
    • 77949538318 scopus 로고    scopus 로고
    • Re-emergence of Chikungunya virus in South-east Asia: virological evidence from Sri Lanka and Singapore
    • Hapuarachchi HC, Bandara KB, Sumanadasa SD, Hapugoda MD, Lai YL, et al. (2010) Re-emergence of Chikungunya virus in South-east Asia: virological evidence from Sri Lanka and Singapore. J Gen Virol 91: 1067-1076.
    • (2010) J Gen Virol , vol.91 , pp. 1067-1076
    • Hapuarachchi, H.C.1    Bandara, K.B.2    Sumanadasa, S.D.3    Hapugoda, M.D.4    Lai, Y.L.5
  • 37
    • 46849106951 scopus 로고    scopus 로고
    • An animal model for studying the pathogenesis of chikungunya virus infection
    • Ziegler SA, Lu L, da Rosa AP, Xiao SY, Tesh RB, (2008) An animal model for studying the pathogenesis of chikungunya virus infection. Am J Trop Med Hyg 79: 133-139.
    • (2008) Am J Trop Med Hyg , vol.79 , pp. 133-139
    • Ziegler, S.A.1    Lu, L.2    da Rosa, A.P.3    Xiao, S.Y.4    Tesh, R.B.5
  • 38
    • 0030743734 scopus 로고    scopus 로고
    • Secondary structure of the 3′-untranslated region of yellow fever virus: implications for virulence, attenuation and vaccine development
    • Proutski V, Gaunt MW, Gould EA, Holmes EC, (1997) Secondary structure of the 3′-untranslated region of yellow fever virus: implications for virulence, attenuation and vaccine development. J Gen Virol 78: 1543-1549.
    • (1997) J Gen Virol , vol.78 , pp. 1543-1549
    • Proutski, V.1    Gaunt, M.W.2    Gould, E.A.3    Holmes, E.C.4
  • 39
    • 14744277411 scopus 로고    scopus 로고
    • Size heterogeneity in the 3′ noncoding region of South American isolates of yellow fever virus
    • Bryant JE, Vasconcelos PF, Rijnbrand RC, Mutebi JP, Higgs S, et al. (2005) Size heterogeneity in the 3′ noncoding region of South American isolates of yellow fever virus. J Virol 79: 3807-3821.
    • (2005) J Virol , vol.79 , pp. 3807-3821
    • Bryant, J.E.1    Vasconcelos, P.F.2    Rijnbrand, R.C.3    Mutebi, J.P.4    Higgs, S.5
  • 40
    • 0035215425 scopus 로고    scopus 로고
    • A live attenuated recombinant dengue-4 virus vaccine candidate with restricted capacity for dissemination in mosquitoes and lack of transmission from vaccinees to mosquitoes
    • Troyer JM, Hanley KA, Whitehead SS, Strickman D, Karron RA, et al. (2001) A live attenuated recombinant dengue-4 virus vaccine candidate with restricted capacity for dissemination in mosquitoes and lack of transmission from vaccinees to mosquitoes. Am J Trop Med Hyg 65: 414-419.
    • (2001) Am J Trop Med Hyg , vol.65 , pp. 414-419
    • Troyer, J.M.1    Hanley, K.A.2    Whitehead, S.S.3    Strickman, D.4    Karron, R.A.5
  • 41
    • 0024390543 scopus 로고
    • Malaria and the work of WHO
    • Najera JA, (1989) Malaria and the work of WHO. Bull World Health Organ 67: 229-243.
    • (1989) Bull World Health Organ , vol.67 , pp. 229-243
    • Najera, J.A.1
  • 42
    • 0036128930 scopus 로고    scopus 로고
    • Personal experiences in the malaria eradication campaign 1955-1962
    • Brown A, (2002) Personal experiences in the malaria eradication campaign 1955-1962. J R Soc Med 95: 154-156.
    • (2002) J R Soc Med , vol.95 , pp. 154-156
    • Brown, A.1
  • 43
    • 84883331464 scopus 로고
    • Aedes agypti eradication in the Americas
    • Severo OP, (1956) Aedes agypti eradication in the Americas. WHO Chron 10: 347-354.
    • (1956) WHO Chron , vol.10 , pp. 347-354
    • Severo, O.P.1
  • 44
    • 0014189878 scopus 로고
    • History of Aedes aegypti eradication in the Americas
    • Camargo S, (1967) History of Aedes aegypti eradication in the Americas. Bull Wld Hlth Org 36: 602-603.
    • (1967) Bull Wld Hlth Org , vol.36 , pp. 602-603
    • Camargo, S.1
  • 45
    • 65249153186 scopus 로고    scopus 로고
    • Every microsatellite is different: Intrinsic DNA features dictate mutagenesis of common microsatellites present in the human genome
    • Eckert KA, Hile SE, (2009) Every microsatellite is different: Intrinsic DNA features dictate mutagenesis of common microsatellites present in the human genome. Mol Carcinog 48: 379-388.
    • (2009) Mol Carcinog , vol.48 , pp. 379-388
    • Eckert, K.A.1    Hile, S.E.2
  • 46
    • 34548182109 scopus 로고    scopus 로고
    • Origin and evolution of flavivirus 5′UTRs and panhandles: trans-terminal duplications?
    • Gritsun TS, Gould EA, (2007) Origin and evolution of flavivirus 5′UTRs and panhandles: trans-terminal duplications? Virology 366: 8-15.
    • (2007) Virology , vol.366 , pp. 8-15
    • Gritsun, T.S.1    Gould, E.A.2
  • 47
    • 0034984219 scopus 로고    scopus 로고
    • Essential role of cyclization sequences in flavivirus RNA replication
    • Khromykh AA, Meka H, Guyatt KJ, Westaway EG, (2001) Essential role of cyclization sequences in flavivirus RNA replication. J Virol 75: 6719-28.
    • (2001) J Virol , vol.75 , pp. 6719-6728
    • Khromykh, A.A.1    Meka, H.2    Guyatt, K.J.3    Westaway, E.G.4
  • 48
    • 0038325607 scopus 로고    scopus 로고
    • A stable full-length yellow fever virus cDNA clone and the role of conserved RNA elements in flavivirus replication
    • Bredenbeek PJ, Kooi EA, Lindenbach B, Huijkman N, Rice CM, et al. (2003) A stable full-length yellow fever virus cDNA clone and the role of conserved RNA elements in flavivirus replication. J Gen Virol 84: 1261-1268.
    • (2003) J Gen Virol , vol.84 , pp. 1261-1268
    • Bredenbeek, P.J.1    Kooi, E.A.2    Lindenbach, B.3    Huijkman, N.4    Rice, C.M.5
  • 49
    • 33747342097 scopus 로고    scopus 로고
    • The 3′ untranslated regions of Kamiti River virus and Cell fusing agent virus originated by self-duplication
    • Gritsun TS, Gould EA, (2006) The 3′ untranslated regions of Kamiti River virus and Cell fusing agent virus originated by self-duplication. J Gen Virol 87: 2615-2619.
    • (2006) J Gen Virol , vol.87 , pp. 2615-2619
    • Gritsun, T.S.1    Gould, E.A.2
  • 50
    • 84865980031 scopus 로고    scopus 로고
    • Eilat virus, a unique alphavirus with host range restricted to insects by RNA replication
    • Nasar F, Palacios G, Gorchakov RV, Guzman H, Da Rosa AP, et al. (2012) Eilat virus, a unique alphavirus with host range restricted to insects by RNA replication. Proc Natl Acad Sci U S A 109: 14622-14627.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 14622-14627
    • Nasar, F.1    Palacios, G.2    Gorchakov, R.V.3    Guzman, H.4    Da Rosa, A.P.5
  • 51
    • 0036101811 scopus 로고    scopus 로고
    • Comparison of two aquatic alphaviruses, salmon pancreas disease virus and sleeping disease virus, by using genome sequence analysis, monoclonal reactivity, and cross-infection
    • Weston J, Villoing S, Brémont M, Castric J, Pfeffer M, et al. (2002) Comparison of two aquatic alphaviruses, salmon pancreas disease virus and sleeping disease virus, by using genome sequence analysis, monoclonal reactivity, and cross-infection. J Virol 76: 6155-6163.
    • (2002) J Virol , vol.76 , pp. 6155-6163
    • Weston, J.1    Villoing, S.2    Brémont, M.3    Castric, J.4    Pfeffer, M.5
  • 52
    • 72449170008 scopus 로고    scopus 로고
    • Characterization of untranslated regions of the salmonid alphavirus 3 (SAV3) genome and construction of a SAV3 based replicon
    • Karlsen M, Villoing S, Rimstad E, Nylund A, (2009) Characterization of untranslated regions of the salmonid alphavirus 3 (SAV3) genome and construction of a SAV3 based replicon. Virol J 6: 173.
    • (2009) Virol J , vol.6 , pp. 173
    • Karlsen, M.1    Villoing, S.2    Rimstad, E.3    Nylund, A.4
  • 53
    • 0032824869 scopus 로고    scopus 로고
    • Biological consequences of deletions within the 3′-untranslated region of flaviviruses may be due to rearrangements of RNA secondary structure
    • Proutski V, Gritsun TS, Gould EA, Holmes EC, (1999) Biological consequences of deletions within the 3′-untranslated region of flaviviruses may be due to rearrangements of RNA secondary structure. Virus Res 64: 107-123.
    • (1999) Virus Res , vol.64 , pp. 107-123
    • Proutski, V.1    Gritsun, T.S.2    Gould, E.A.3    Holmes, E.C.4
  • 54
    • 42949166285 scopus 로고    scopus 로고
    • Identification of viral miRNAs
    • Sullivan CS, Grundhoff A, (2007) Identification of viral miRNAs. Meth Enzymol 427: 3-23.
    • (2007) Meth Enzymol , vol.427 , pp. 3-23
    • Sullivan, C.S.1    Grundhoff, A.2
  • 55
    • 79953313277 scopus 로고    scopus 로고
    • Mosquito RNAi is the major innate immune pathway controlling arbovirus infection and transmission
    • Blair CD, (2011) Mosquito RNAi is the major innate immune pathway controlling arbovirus infection and transmission. Future Microbiol 6: 265-277.
    • (2011) Future Microbiol , vol.6 , pp. 265-277
    • Blair, C.D.1
  • 56
    • 79956355315 scopus 로고    scopus 로고
    • Chikungunya virus emergence is constrained in Asia by lineage-specific adaptive landscapes
    • Tsetsarkin KA, Chen R, Leal G, Forrester N, Higgs S, et al. (2011) Chikungunya virus emergence is constrained in Asia by lineage-specific adaptive landscapes. Proc Natl Acad Sci U S A 108: 7872-7877.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 7872-7877
    • Tsetsarkin, K.A.1    Chen, R.2    Leal, G.3    Forrester, N.4    Higgs, S.5
  • 58
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D, Crandall KA, (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 59
    • 68049142320 scopus 로고    scopus 로고
    • Multiple Alignment of DNA Sequences with MAFFT
    • Katoh K, Asimenos G, Toh H, (2009) Multiple Alignment of DNA Sequences with MAFFT. Methods Mol Biol 537: 39-64.
    • (2009) Methods Mol Biol , vol.537 , pp. 39-64
    • Katoh, K.1    Asimenos, G.2    Toh, H.3
  • 60
    • 65649120006 scopus 로고    scopus 로고
    • PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots
    • Byun Y, Han K, (2009) PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots,. Bioinformatics 25: 1435-1437.
    • (2009) Bioinformatics , vol.25 , pp. 1435-1437
    • Byun, Y.1    Han, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.