메뉴 건너뛰기




Volumn 240, Issue 1, 1998, Pages 100-108

The Alphavirus 3'-nontranslated region: Size heterogeneity and arrangement of repeated sequence elements

Author keywords

3' nontranslated region (NTR); Alphavirus; Nucleotide sequence data; Repeated sequence elements

Indexed keywords

CIS ACTING ELEMENT; COMPLEMENTARY DNA; POLYADENYLIC ACID; VIRUS RNA;

EID: 0032484472     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1997.8907     Document Type: Article
Times cited : (75)

References (40)
  • 1
    • 0000476744 scopus 로고
    • Animal RNA virus expression systems
    • Bredenbeek P. J., Rice C. M. Animal RNA virus expression systems. Semin. Virol. 3:1992;297-310.
    • (1992) Semin. Virol. , vol.3 , pp. 297-310
    • Bredenbeek, P.J.1    Rice, C.M.2
  • 2
    • 0022343987 scopus 로고
    • Arbovirus investigations in Argentina, 1977-1980. III. Identification and characterization of viruses isolated, including new subtypes of western and Venezuelan equine encephalitis viruses and four new bunyaviruses (Las Malayos, Resistencia, Barranqueras, and Antequera)
    • Calisher C. H., Monath T. P., Mitchell C. J., Sabattini M. S., Cropp C. B., Kerschner J., Hunt A. R., Lazuick J. S. Arbovirus investigations in Argentina, 1977-1980. III. Identification and characterization of viruses isolated, including new subtypes of western and Venezuelan equine encephalitis viruses and four new bunyaviruses (Las Malayos, Resistencia, Barranqueras, and Antequera). Am. J. Trop. Med. Hyg. 34:1985;956-965.
    • (1985) Am. J. Trop. Med. Hyg. , vol.34 , pp. 956-965
    • Calisher, C.H.1    Monath, T.P.2    Mitchell, C.J.3    Sabattini, M.S.4    Cropp, C.B.5    Kerschner, J.6    Hunt, A.R.7    Lazuick, J.S.8
  • 3
    • 0023852103 scopus 로고
    • Reevaluation of the western equine encephalitis antigenic complex of alphaviruses (family Togaviridae) as determined by neutralization tests
    • Calisher C. H., Karabatsos N., Lazuick J. S., Monath T. P., Wolff K. L. Reevaluation of the western equine encephalitis antigenic complex of alphaviruses (family Togaviridae) as determined by neutralization tests. Am. J. Trop. Med. Hyg. 38:1988;447-452.
    • (1988) Am. J. Trop. Med. Hyg. , vol.38 , pp. 447-452
    • Calisher, C.H.1    Karabatsos, N.2    Lazuick, J.S.3    Monath, T.P.4    Wolff, K.L.5
  • 4
    • 0023389754 scopus 로고
    • Nucleotide sequence of the genome region encoding the 26S RNA of eastern equine encephalomyelitis virus and the deduced amino acid sequence of the viral structural proteins
    • Chang G.J. J., Trent D. W. Nucleotide sequence of the genome region encoding the 26S RNA of eastern equine encephalomyelitis virus and the deduced amino acid sequence of the viral structural proteins. J. Gen. Virol. 68:1987;2129-2142.
    • (1987) J. Gen. Virol. , vol.68 , pp. 2129-2142
    • Chang, G.J.J.1    Trent, D.W.2
  • 5
    • 0029897325 scopus 로고    scopus 로고
    • Genetic conservation of Highlands J viruses
    • Cilnis M. J., Kang W., Weaver S. C. Genetic conservation of Highlands J viruses. Virology. 218:1996;343-351.
    • (1996) Virology , vol.218 , pp. 343-351
    • Cilnis, M.J.1    Kang, W.2    Weaver, S.C.3
  • 6
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:1984;387-395.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 8
    • 0023053634 scopus 로고
    • Regions of conservation and divergence in the 3′ untranslated sequences of genomic RNA from Ross River virus isolates
    • Faragher S. G., Dalgarno L. Regions of conservation and divergence in the 3′ untranslated sequences of genomic RNA from Ross River virus isolates. J. Mol. Biol. 190:1986;141-148.
    • (1986) J. Mol. Biol. , vol.190 , pp. 141-148
    • Faragher, S.G.1    Dalgarno, L.2
  • 9
    • 0023904047 scopus 로고
    • Genome sequences of a mouse-avirulent and a mouse-virulent strain of Ross River virus
    • Faragher S. G., Meek A. D. J., Rice C. M., Dalgarno L. Genome sequences of a mouse-avirulent and a mouse-virulent strain of Ross River virus. Virology. 163:1988;509-526.
    • (1988) Virology , vol.163 , pp. 509-526
    • Faragher, S.G.1    Meek, A.D.J.2    Rice, C.M.3    Dalgarno, L.4
  • 10
    • 0018667611 scopus 로고
    • Biophysical studies on circle formation by Sindbis virus 49S RNA
    • Frey T. K., Gard D. L., Strauss J. H. Biophysical studies on circle formation by Sindbis virus 49S RNA. J. Mol. Biol. 132:1979;1-18.
    • (1979) J. Mol. Biol. , vol.132 , pp. 1-18
    • Frey, T.K.1    Gard, D.L.2    Strauss, J.H.3
  • 11
    • 0019300295 scopus 로고
    • Nucleotide sequence of cDNA coding for Semliki Forest virus membrane glycoproteins
    • Garoff H., Frischauf A.-M., Simons K., Lehrach H., Delius H. Nucleotide sequence of cDNA coding for Semliki Forest virus membrane glycoproteins. Nature (London). 288:1980;236-241.
    • (1980) Nature (London) , vol.288 , pp. 236-241
    • Garoff, H.1    Frischauf, A.-M.2    Simons, K.3    Lehrach, H.4    Delius, H.5
  • 13
    • 0029946792 scopus 로고    scopus 로고
    • Nonhomologous RNA-RNA recombination events at the 3′ nontranslated region of the Sindbis virus genome: Hot spots and utilization of nonviral sequences
    • Hajjou M., Hill K. R., Subramaniam S. V., Hu J. Y., Raju R. Nonhomologous RNA-RNA recombination events at the 3′ nontranslated region of the Sindbis virus genome: Hot spots and utilization of nonviral sequences. J. Virol. 70:1996;5153-5164.
    • (1996) J. Virol. , vol.70 , pp. 5153-5164
    • Hajjou, M.1    Hill, K.R.2    Subramaniam, S.V.3    Hu, J.Y.4    Raju, R.5
  • 14
    • 0003964593 scopus 로고
    • San Antonio: The Subcommittee on the Information Exchange of the American Committee on the Arthropod-Borne Viruses and the American Society of Tropical Medicine and Hygiene
    • Karabatsos N. International Catalogue of Arboviruses, Including Certain Other Viruses of Vertebrates. 1985;The Subcommittee on the Information Exchange of the American Committee on the Arthropod-Borne Viruses and the American Society of Tropical Medicine and Hygiene, San Antonio.
    • (1985) International Catalogue of Arboviruses, Including Certain Other Viruses of Vertebrates
    • Karabatsos, N.1
  • 15
    • 0024547862 scopus 로고
    • The full-length nucleotide sequences of the virulent Trinidad donkey strain of Venezuelan equine encephalitis virus and its attenuated vaccine derivative, strain TC-83
    • Kinney R. M., Johnson B. J. B., Welch J. B., Tsuchiya K. R., Trent D. W. The full-length nucleotide sequences of the virulent Trinidad donkey strain of Venezuelan equine encephalitis virus and its attenuated vaccine derivative, strain TC-83. Virology. 170:1989;19-30.
    • (1989) Virology , vol.170 , pp. 19-30
    • Kinney, R.M.1    Johnson, B.J.B.2    Welch, J.B.3    Tsuchiya, K.R.4    Trent, D.W.5
  • 16
    • 0020684031 scopus 로고
    • Comparative immunological and biochemical analyses of viruses in the Venezuelan equine encephalitis complex
    • Kinney R. M., Trent D. W., France J. K. Comparative immunological and biochemical analyses of viruses in the Venezuelan equine encephalitis complex. J. Gen. Virol. 64:1983;135-147.
    • (1983) J. Gen. Virol. , vol.64 , pp. 135-147
    • Kinney, R.M.1    Trent, D.W.2    France, J.K.3
  • 17
    • 0027090103 scopus 로고
    • Genetic evidence that epizootic Venezuelan equine encephalitis (VEE) virus may have evolved from enzootic VEE subtype I-D virus
    • Kinney R. M., Tsuchiya K. R., Sneider J. M., Trent D. W. Genetic evidence that epizootic Venezuelan equine encephalitis (VEE) virus may have evolved from enzootic VEE subtype I-D virus. Virology. 191:1992;569-580.
    • (1992) Virology , vol.191 , pp. 569-580
    • Kinney, R.M.1    Tsuchiya, K.R.2    Sneider, J.M.3    Trent, D.W.4
  • 18
    • 0029795276 scopus 로고    scopus 로고
    • Chimeric Sindbis-Ross River viruses to study interactions between alphavirus nonstructural and structural regions
    • Kuhn R. J., Griffin D. E., Owen K. E., Niesters H. G. M., Strauss J. H. Chimeric Sindbis-Ross River viruses to study interactions between alphavirus nonstructural and structural regions. J. Virol. 70:1996;7900-7909.
    • (1996) J. Virol. , vol.70 , pp. 7900-7909
    • Kuhn, R.J.1    Griffin, D.E.2    Owen, K.E.3    Niesters, H.G.M.4    Strauss, J.H.5
  • 19
    • 0025255251 scopus 로고
    • Mutagenesis of the 3′ nontranslated region of Sindbis virus RNA
    • Kuhn R. J., Hong Z., Strauss J. H. Mutagenesis of the 3′ nontranslated region of Sindbis virus RNA. J. Virol. 64:1990;1465-1476.
    • (1990) J. Virol. , vol.64 , pp. 1465-1476
    • Kuhn, R.J.1    Hong, Z.2    Strauss, J.H.3
  • 20
    • 0025728725 scopus 로고
    • Infectious RNA transcripts from Ross River virus cDNA clones and the construction and characterization of defined chimeras with Sindbis virus
    • Kuhn R. J., Niesters H. G. M., Hong Z., Strauss J. H. Infectious RNA transcripts from Ross River virus cDNA clones and the construction and characterization of defined chimeras with Sindbis virus. Virology. 182:1991;430-441.
    • (1991) Virology , vol.182 , pp. 430-441
    • Kuhn, R.J.1    Niesters, H.G.M.2    Hong, Z.3    Strauss, J.H.4
  • 21
    • 0027296795 scopus 로고
    • A phylogenetically conserved sequence within viral 3′ untranslated RNA pseudoknots regulates translation
    • Leathers V., Tanguay R., Kobayashi M., Gallie D. R. A phylogenetically conserved sequence within viral 3′ untranslated RNA pseudoknots regulates translation. Mol. Cell. Biol. 13:1993;5331-5347.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 5331-5347
    • Leathers, V.1    Tanguay, R.2    Kobayashi, M.3    Gallie, D.R.4
  • 22
    • 0025268737 scopus 로고
    • Complete sequence of the genomic RNA of O'Nyong-nyong virus and its use in the construction of alphavirus phylogenetic trees
    • Levinson R. S., Strauss J. H., Strauss E. G. Complete sequence of the genomic RNA of O'Nyong-nyong virus and its use in the construction of alphavirus phylogenetic trees. Virology. 175:1990;110-123.
    • (1990) Virology , vol.175 , pp. 110-123
    • Levinson, R.S.1    Strauss, J.H.2    Strauss, E.G.3
  • 25
    • 0029656131 scopus 로고    scopus 로고
    • Homologous RNA recombination in brome mosaic virus: AU-rich sequences decrease the accuracy of crossovers
    • Nagy P. D., Bujarski J. J. Homologous RNA recombination in brome mosaic virus: AU-rich sequences decrease the accuracy of crossovers. J. Virol. 70:1996;415-426.
    • (1996) J. Virol. , vol.70 , pp. 415-426
    • Nagy, P.D.1    Bujarski, J.J.2
  • 27
    • 0021112315 scopus 로고
    • The 5′-terminal sequences of the genomic RNAs of several alphaviruses
    • Ou J.-H., Strauss E. G., Strauss J. H. The 5′-terminal sequences of the genomic RNAs of several alphaviruses. J. Mol. Biol. 168:1983;1-15.
    • (1983) J. Mol. Biol. , vol.168 , pp. 1-15
    • Ou, J.-H.1    Strauss, E.G.2    Strauss, J.H.3
  • 28
    • 0020490544 scopus 로고
    • The 3′-non-coding regions of alphavirus RNAs contain repeating sequences
    • Ou J.-H., Trent D. W., Strauss J. H. The 3′-non-coding regions of alphavirus RNAs contain repeating sequences. J. Mol. Biol. 156:1982;719-730.
    • (1982) J. Mol. Biol. , vol.156 , pp. 719-730
    • Ou, J.-H.1    Trent, D.W.2    Strauss, J.H.3
  • 29
    • 0031461179 scopus 로고    scopus 로고
    • Genus-specific detection of alphaviruses by a semi-nested reverse transcription-polymerase chain reaction
    • Pfeffer M., Proebster B., Kinney R. M., Kaaden O.-R. Genus-specific detection of alphaviruses by a semi-nested reverse transcription-polymerase chain reaction. Am. J. Trop. Med. Hyg. 57:1997.
    • (1997) Am. J. Trop. Med. Hyg. , vol.57
    • Pfeffer, M.1    Proebster, B.2    Kinney, R.M.3    Kaaden, O.-R.4
  • 30
    • 0028989915 scopus 로고
    • Aura virus is a New World representative of Sindbis-like viruses
    • Rümenapf T., Strauss E. G., Strauss J. H. Aura virus is a New World representative of Sindbis-like viruses. Virology. 208:1995;621-633.
    • (1995) Virology , vol.208 , pp. 621-633
    • Rümenapf, T.1    Strauss, E.G.2    Strauss, J.H.3
  • 32
    • 0028282483 scopus 로고
    • Multiple repeating motifs are found in the 3′-terminal nontranslated region of Semliki Forest virus A7 variant genome
    • Santagati M. G., Itaranta P. V., Koskimies P. R., Maatta J. A., Salmi A. A., Hinkkanen A. E. Multiple repeating motifs are found in the 3′-terminal nontranslated region of Semliki Forest virus A7 variant genome. J. Gen. Virol. 75:1994;1499-1504.
    • (1994) J. Gen. Virol. , vol.75 , pp. 1499-1504
    • Santagati, M.G.1    Itaranta, P.V.2    Koskimies, P.R.3    Maatta, J.A.4    Salmi, A.A.5    Hinkkanen, A.E.6
  • 33
    • 0025755356 scopus 로고
    • Structure of the Ockelbo virus genome and its relationship to other Sindbis viruses
    • Shirako Y., Niklasson B, Dalrymple J. M., Strauss E. G., Strauss J. H. Structure of the Ockelbo virus genome and its relationship to other Sindbis viruses. Virology. 182:1991;753-764.
    • (1991) Virology , vol.182 , pp. 753-764
    • Shirako, Y.1    Niklasson, B.2    Dalrymple, J.M.3    Strauss, E.G.4    Strauss, J.H.5
  • 34
    • 0027412984 scopus 로고
    • Molecular evidence that epizootic Venezuelan equine encephalitis (VEE) I-AB viruses are not evolutionary derivatives of enzootic VEE subtypes I-E or II viruses
    • Sneider J. M., Kinney R. M., Tsuchiya K. R., Trent D. W. Molecular evidence that epizootic Venezuelan equine encephalitis (VEE) I-AB viruses are not evolutionary derivatives of enzootic VEE subtypes I-E or II viruses. J. Gen. Virol. 74:1993;519-523.
    • (1993) J. Gen. Virol. , vol.74 , pp. 519-523
    • Sneider, J.M.1    Kinney, R.M.2    Tsuchiya, K.R.3    Trent, D.W.4
  • 35
    • 0021319456 scopus 로고
    • Complete nucleotide sequence of the genomic RNA of Sindbis virus
    • Strauss E. G., Rice C. M., Strauss J. H. Complete nucleotide sequence of the genomic RNA of Sindbis virus. Virology. 133:1984;92-110.
    • (1984) Virology , vol.133 , pp. 92-110
    • Strauss, E.G.1    Rice, C.M.2    Strauss, J.H.3
  • 36
    • 0001935242 scopus 로고
    • Structure and replication of the alphavirus genome
    • S. Schlesinger, & M.J. Schlesinger. New York: Plenum
    • Strauss E. G., Strauss J. H. Structure and replication of the alphavirus genome. Schlesinger S., Schlesinger M. J. The Togaviridae and Flaviviridae. 1986;35-90 Plenum, New York.
    • (1986) The Togaviridae and Flaviviridae , pp. 35-90
    • Strauss, E.G.1    Strauss, J.H.2
  • 38
    • 0023056888 scopus 로고
    • Complete nucleotide sequence of the nonstructural genes of Semliki Forest virus
    • Takkinen K. Complete nucleotide sequence of the nonstructural genes of Semliki Forest virus. Nucleic Acids Res. 14:1986;5667-5682.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 5667-5682
    • Takkinen, K.1
  • 39
    • 0028785280 scopus 로고
    • The Flavivirus 3′-noncoding region: Extensive size heterogeneity independent of evolutionary relationships among strains of tick-borne encephalitis virus
    • Wallner G., Mandl C. W., Kunz C., Heinz F. X. The Flavivirus 3′-noncoding region: Extensive size heterogeneity independent of evolutionary relationships among strains of tick-borne encephalitis virus. Virology. 213:1995;169-178.
    • (1995) Virology , vol.213 , pp. 169-178
    • Wallner, G.1    Mandl, C.W.2    Kunz, C.3    Heinz, F.X.4
  • 40
    • 0029447820 scopus 로고
    • RNA determinants of junction site selection in RNA recombinants and defective interfering RNAs
    • White K. A., Morris T. J. RNA determinants of junction site selection in RNA recombinants and defective interfering RNAs. RNA. 1:1995;1029-1040.
    • (1995) RNA , vol.1 , pp. 1029-1040
    • White, K.A.1    Morris, T.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.