A novel ion pairing LC/MS metabolomics protocol for study of a variety of biologically relevant polar metabolites

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 936, Issue , 2013, Pages 63-73

  Knee, Jose M ^a   Rzezniczak, Teresa Z ^a   Barsch, Aiko ^b   Guo, Kevin Z ^b   Merritt, Thomas J S ^a  

^a LAURENTIAN UNIVERSITY   (Canada)

^b BRUKER DALTONIK GMBH   (Germany)

Author keywords

Diamyl ammonium (DAA); Drosophila metabolomics; Ion pairing chromatography; IP LC MS; Polar metabolites

Indexed keywords

DIAMYL AMMONIUM (DAA); ION-PAIRING CHROMATOGRAPHY; IP-LC-MS; METABOLOMICS; POLAR METABOLITE;

CHROMATOGRAPHIC ANALYSIS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLISM; OXYGEN; SUGARS;

METABOLITES;

AMMONIUM DERIVATIVE; CARBOXYLIC ACID; DIAMYL AMMONIUM; NUCLEOTIDE; PARAQUAT; SUGAR PHOSPHATE; SUPEROXIDE DISMUTASE; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; DROSOPHILA; ENZYME ACTIVITY; FEMALE; ION PAIRING LIQUID CHROMATOGRAPHY; LIMIT OF DETECTION; LIMIT OF QUANTITATION; LIQUID CHROMATOGRAPHY; MALE; MASS SPECTROMETRY; METABOLISM; METABOLITE; METABOLOMICS; NONHUMAN; OXIDATIVE STRESS; PRIORITY JOURNAL; REPRODUCIBILITY;

EID: 84883339600     PISSN: 15700232     EISSN: 1873376X     Source Type: Journal    
DOI: 10.1016/j.jchromb.2013.07.027     Document Type: Article

References (52)

1. Trethewey R.N., Krotzky A.J., Willmitzer L. Curr. Opin. Plant Biol. 1999, 2:83.
2. R. Satyanand Tyagi, Int. J. Pharm. Sci. Rev. Res. 3, 2010, 83.
3. Reitman Z.J., Jin G., Karoly E.D., Spasojevic I., Yang J., Kinzler K.W., He Y., Bigner D.D., Vogelstein B., Yan H. Proc. Natl. Acad. Sci. 2011.
4. Wu H., Liu X., You L., Zhang L., Yu J., Zhou D., Zhao J., Feng J. Plant Mol. Biol. Report 2012, 30:590.
5. Smith J.E., Lay J.O., Bluhm B.H. Metabolomics 2012, 8:376.
6. Giri S., Idle J.R., Chen C., Zabriskie T.M., Krausz K.W., Gonzalez F.J. Chem. Res. Toxicol. 2006, 19:818.
7. Kristensen M., Engelsen S.B., Dragsted L.O. Metabolomics 2012, 8:64.
8. Schauer N., Steinhauser D., Strelkov S., Schomburg D., Allison G., Moritz T., Lundgren K., Roessner-Tunali U., Forbes M.G., Willmitzer L., Fernie A.R., Kopka J. FEBS Lett. 2005, 579:1332.
9. Koek M.M., Jellema R.H., van der Greef J., Tas A.C., Hankemeier T. Metabolomics Off. J. Metabolomic Soc. 2011, 7:307.
10. Bratty M.A., Hobani Y., Dow J.A.T., Watson D.G. Metabolomics 2011, 7:542.
11. Chambers M.C., Song K.H., Schneider D.S. PLoS ONE 2012, 7:e50679.
12. Passador-Gurgel G., Hsieh W.-P., Hunt P., Deighton N., Gibson G. Nat. Genet. 2007, 39:264.
13. Cheng Z., Tsuda M., Kishita Y., Sato Y., Aigaki T. Biochem. Biophys. Res. Commun. 2013.
14. Kamleh M.A., Hobani Y., Dow J.A.T., Watson D.G. FEBS Lett. 2008, 582:2916.
15. Cubbon S., Antonio C., Wilson J., Thomas-Oates J. Mass Spectrom. Rev. 2010, 29:671.
16. Tolstikov V.V., Fiehn O. Anal. Biochem. 2002, 301:298.
17. Bajad S.U., Lu W., Kimball E.H., Yuan J., Peterson C., Rabinowitz J.D. J. Chromatogr. A 2006, 1125:76.
18. Bernard K.E., Parkes T.L., Merritt T.J.S. PLoS ONE 2011, 6:e24518.
19. Luo B., Groenke K., Takors R., Wandrey C., Oldiges M. J. Chromatogr. A 2007, 1147:153.
20. Campbell S.D., Hilliker A.J., Phillips J.P. Genetics 1986, 112:205.
21. Parkes T.L., Kirby K., Phillips J.P., Hilliker A.J. Genome Natl. Res. Counc. Can. Génome Cons. Natl. Rech. Can. 1998, 41:642.
22. James S.J., Cutler P., Melnyk S., Jernigan S., Janak L., Gaylor D.W., Neubrander J.A. Am. J. Clin. Nutr. 2004, 80:1611.
23. Singh R., Lemire J., Mailloux R.J., Appanna V.D. PLoS ONE 2008, 3.
24. Liu J., Litt L., Segal M.R., Kelly M.J.S., Pelton J.G., Kim M. Int. J. Mol. Sci. 2011, 12:6469.
25. Clark A.G., Wang L. Evolution 1994, 48:1230.
26. Montooth K.L., Marden J.H., Clark A.G. Genetics 2003, 165:623.
27. Goto S.G., Kimura M.T. Mol. Phylogenet. Evol. 2001, 18:404.
28. Rzezniczak T.Z., Douglas L.A., Watterson J.H., Merritt T.J.S. Anal. Biochem. 2011, 419:345.
29. Xia J., Psychogios N., Young N., Wishart D.S. Nucleic Acids Res. 2009, 37:W652.
30. Xia J., Mandal R., Sinelnikov I.V., Broadhurst D., Wishart D.S. Nucleic Acids Res. 2012.
31. Matuszewski B.K., Constanzer M.L., Chavez-Eng C.M. Anal. Chem. 1998, 70:882.
32. Hsieh Y., Chintala M., Mei H., Agans J., Brisson J.-M., Ng K., Korfmacher W.A. Rapid Commun. Mass Spectrom. 2001, 15:2481.
33. Mallet C.R., Lu Z., Mazzeo J.R. Rapid Commun. Mass Spectrom. 2004, 18:49.
34. Müller C., Schäfer P., Störtzel M., Vogt S., Weinmann W. J. Chromatogr. B Analyt. Technol. Biomed. Life. Sci. 2002, 773:47.
35. Böttcher C., van Roepenack-Lahaye E., Willscher E., Scheel D., Clemens S. Anal. Chem. 2007, 79:1507.
36. van Dam J.C., Eman M.R., Frank J., Lange H.C., van Dedem G.W., Heijnen S.J. Anal. Chim. Acta 2002, 460:209.
37. Huck J.H.J., Struys E.A., Verhoeven N.M., Jakobs C., van der Knaap M.S. Clin. Chem. 2003, 49:1375.
38. Soga T., Igarashi K., Ito C., Mizobuchi K., Zimmermann H.-P., Tomita M. Anal. Chem. 2009, 81:6165.
39. Coulier L., Bas R., Jespersen S., Verheij E., van der Werf M.J., Hankemeier T. Anal. Chem. 2006, 78:6573.
40. FDA Guidance for Industry Bioanalytical Method Validation 2001, Food and Drug Administration, Center for Drug Evaluation and Research (CDER), (A Guidance).
41. Gika H.G., Theodoridis G.A., Wingate J.E., Wilson I.D. J. Proteome Res. 2007, 6:3291.
42. Dunn W.B., Broadhurst D., Brown M., Baker P.N., Redman C.W.G., Kenny L.C., Kell D.B. J. Chromatogr. B Analyt. Technol. Biomed. Life. Sci. 2008, 871:288.
43. Rzezniczak T.Z., Merritt T.J.S. G3 Bethesda Md 2012, 2:1613.
44. Merritt T.J.S., Duvernell D., Eanes W.F. Genetics 2005, 171:1707.
45. Weckwerth W., Loureiro M.E., Wenzel K., Fiehn O. Proc. Natl. Acad. Sci. USA 2004, 101:7809.
46. Neu J., Shenoy V., Chakrabarti R. FASEB J. 1996, 10:829.
47. Piva T.J., Mcevoy-Bowe E. J. Cell. Biochem. 1998, 68:213.
48. Matés J.M., Pérez-Gómez C., de Castro I.N., Asenjo M., Márquez J. Int. J. Biochem. Cell Biol. 2002, 34:439.
49. Jardon M.A., Sattha B., Braasch K., Leung A.O., Côté H.C.F., Butler M., Gorski S.M., Piret J.M. Biotechnol. Bioeng. 2012, 109:1228.
50. Matzkin L.M., Johnson S., Paight C., Bozinovic G., Markow T.A. J. Nutr. 2011, 141:1127.
51. Matzkin L.M., Johnson S., Paight C., Markow T.A. PLoS ONE 2013, 8:e59530.
52. Orozco-terWengel P., Kapun M., Nolte V., Kofler R., Flatt T., Schlötterer C. Mol. Ecol. 2012, 21:4931.