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Volumn 12, Issue 3, 2013, Pages 165-172

Identifying protein complexes based on multiple topological structures in ppi networks

Author keywords

Clique; core attachment structure; dense subgraph; protein complex; starlike structure

Indexed keywords

CLIQUE; CORE-ATTACHMENT STRUCTURES; DENSE SUBGRAPH; PROTEIN COMPLEXES; STARLIKE STRUCTURES;

EID: 84883337795     PISSN: 15361241     EISSN: None     Source Type: Journal    
DOI: 10.1109/TNB.2013.2264097     Document Type: Article
Times cited : (20)

References (32)
  • 4
    • 33847744247 scopus 로고    scopus 로고
    • How complete are current yeast and human protein-interaction networks?
    • art. 120
    • G. T. Hart, A. K. Ramani, and E. M. Marcotte, "How complete are current yeast and human protein-interaction networks?, " Genome Biol., vol. 7, no. 11, 2006, art. 120.
    • (2006) Genome Biol. , vol.7 , Issue.11
    • Hart, G.T.1    Ramani, A.K.2    Marcotte, E.M.3
  • 5
    • 84862660561 scopus 로고    scopus 로고
    • Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments
    • May
    • A. I. Nesvizhskii, "Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments, " Proteomics, vol. 12, no. 10, pp. 1639-1655, May 2012.
    • (2012) Proteomics , vol.12 , Issue.10 , pp. 1639-1655
    • Nesvizhskii, A.I.1
  • 8
    • 0142059836 scopus 로고    scopus 로고
    • Protein complexes and functional modules in molecular networks
    • Oct
    • V. Spirin and L. A. Mirny, "Protein complexes and functional modules in molecular networks, " Proc. Natl. Acad. Sci. USA, vol. 100, pp. 12123-12128, Oct. 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 12123-12128
    • Spirin, V.1    Mirny, L.A.2
  • 9
    • 80053007682 scopus 로고    scopus 로고
    • Detecting protein complexes and functional modules from protein interaction networks: A graph entropy approach
    • E. C. Kenley and Y. R. Cho, "Detecting protein complexes and functional modules from protein interaction networks: A graph entropy approach, " Proteomics, vol. 11, pp. 3835-3844, 2011.
    • (2011) Proteomics , vol.11 , pp. 3835-3844
    • Kenley, E.C.1    Cho, Y.R.2
  • 12
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Jan
    • G. D. Bader and C. W. Hogue, "An automated method for finding molecular complexes in large protein interaction networks, " BMC Bioinformatics, vol. 4, p. 2, Jan. 2003.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 13
    • 10244264813 scopus 로고    scopus 로고
    • Protein complex prediction via costbased clustering
    • A. D. King, N. Przulj, and I. Jurisica, "Protein complex prediction via costbased clustering, " Bioinformatics, vol. 20, no. 17, pp. 3013-3020, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3013-3020
    • King, A.D.1    Przulj, N.2    Jurisica, I.3
  • 14
    • 63549103226 scopus 로고    scopus 로고
    • Enumeration of condition-dependent dense modules in protein interaction networks
    • E. Georgii, S. Dietmann, T. Uno, P. Pagel, and K. Tsuda, "Enumeration of condition-dependent dense modules in protein interaction networks, " Bioinformatics, vol. 25, no. 7, pp. 933-940, 2009.
    • (2009) Bioinformatics , vol.25 , Issue.7 , pp. 933-940
    • Georgii, E.1    Dietmann, S.2    Uno, T.3    Pagel, P.4    Tsuda, K.5
  • 15
    • 33748579201 scopus 로고    scopus 로고
    • Interaction graph mining for protein complexes using local clique merging
    • X. L. Li, S. H. Tan, C. S. Foo, and S. K. Ng, "Interaction graph mining for protein complexes using local clique merging, " Genome Informatics, vol. 16, no. 2, pp. 260-269, 2005.
    • (2005) Genome Informatics , vol.16 , Issue.2 , pp. 260-269
    • Li, X.L.1    Tan, S.H.2    Foo, C.S.3    Ng, S.K.4
  • 17
    • 61849113253 scopus 로고    scopus 로고
    • Graph clustering via a discrete uncoupling process
    • Feb
    • S. van Dongen, "Graph clustering via a discrete uncoupling process, " SIAM. J. Matrix Anal. Appl., vol. 30, no. 1, pp. 121-141, Feb. 2008.
    • (2008) SIAM. J. Matrix Anal. Appl. , vol.30 , Issue.1 , pp. 121-141
    • Van Dongen, S.1
  • 18
    • 84872678695 scopus 로고    scopus 로고
    • Identifying protein complexes in proteinprotein interaction networks by using clique seeds and graph entropy
    • Jan
    • B. Chen, J. Shi, S. Zhang, and F. X.Wu, "Identifying protein complexes in proteinprotein interaction networks by using clique seeds and graph entropy, " Proteomics, vol. 13, no. 2, pp. 269-277, Jan. 2013.
    • (2013) Proteomics , vol.13 , Issue.2 , pp. 269-277
    • Chen, B.1    Shi, J.2    Zhang, S.3    Wu, F.X.4
  • 19
    • 39149104693 scopus 로고    scopus 로고
    • Are protein complexes made of cores, modules and attachments?
    • Feb
    • C. N. Pang, J. R. Krycer, A. Lek, andM. R.Wilkins, "Are protein complexes made of cores, modules and attachments?, " Proteomics, vol. 8, no. 3, pp. 425-434, Feb. 2008.
    • (2008) Proteomics , vol.8 , Issue.3 , pp. 425-434
    • Pang, C.N.1    Krycer, J.R.2    Lek, A.3    Wilkins, M.R.4
  • 20
    • 59649099220 scopus 로고    scopus 로고
    • Predicting protein complexes from PPI data: A core-attachment approach
    • Feb
    • H. C. Leung, Q. Xiang, S. M. Yiu, and F. Y. Chin, "Predicting protein complexes from PPI data: A core-attachment approach, " J. Comput. Biol., vol. 16, no. 2, pp. 133-144, Feb. 2009.
    • (2009) J. Comput. Biol. , vol.16 , Issue.2 , pp. 133-144
    • Leung, H.C.1    Xiang, Q.2    Yiu, S.M.3    Chin, F.Y.4
  • 21
    • 67649518162 scopus 로고    scopus 로고
    • A core-attachment based method to detect protein complexes in PPI networks
    • Jun
    • M.Wu, X. Li, C. K. Kwoh, and S. K. Ng, "A core-attachment based method to detect protein complexes in PPI networks, " BMC Bioinformatics, vol. 10, p. 169, Jun. 2009.
    • (2009) BMC Bioinformatics , vol.10 , pp. 169
    • Wu, M.1    Li, X.2    Kwoh, C.K.3    Ng, S.K.4
  • 22
    • 80053019467 scopus 로고    scopus 로고
    • Identification of core-attachment complexes based on maximal frequent patterns in protein-protein interaction networks
    • Oct
    • L. Yu, L. Gao, and C. Kong, "Identification of core-attachment complexes based on maximal frequent patterns in protein-protein interaction networks, " Proteomics, vol. 11, no. 19, pp. 3826-3834, Oct. 2011.
    • (2011) Proteomics , vol.11 , Issue.19 , pp. 3826-3834
    • Yu, L.1    Gao, L.2    Kong, C.3
  • 23
  • 24
    • 0242268461 scopus 로고    scopus 로고
    • Predicting protein functions from redundancies in large-scale protein interaction networks
    • Oct
    • M. P. Samanta and S. Liang, "Predicting protein functions from redundancies in large-scale protein interaction networks, " Proc. Natl. Acad. Sci. USA, vol. 100, pp. 12579-12583, Oct. 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 12579-12583
    • Samanta, M.P.1    Liang, S.2
  • 30
    • 57649232146 scopus 로고    scopus 로고
    • A structural approach for finding functional modules from large biological networks
    • Aug
    • M. Mete, F. Tang, X. Xu, and N. Yuruk, "A structural approach for finding functional modules from large biological networks, " BMC Bioinformatics, vol. 9, p. S19, Aug. 2008.
    • (2008) BMC Bioinformatics , vol.9
    • Mete, M.1    Tang, F.2    Xu, X.3    Yuruk, N.4
  • 32
    • 84860361165 scopus 로고    scopus 로고
    • Detecting overlapping protein complexes in protein-protein interaction networks
    • Mar
    • T. Nepusz, H. Yu, and A. Paccanaro, "Detecting overlapping protein complexes in protein-protein interaction networks, " Nature Methods, vol. 9, no. 5, pp. 471-472, Mar. 2012.
    • (2012) Nature Methods , vol.9 , Issue.5 , pp. 471-472
    • Nepusz, T.1    Yu, H.2    Paccanaro, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.