-
1
-
-
0034628487
-
Guilt-by-association goes global
-
Oliver, S., Guilt-by-association goes global. Nature 2000, 403, 601-603.
-
(2000)
Nature
, vol.403
, pp. 601-603
-
-
Oliver, S.1
-
2
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual, J.-F., Venkatesan, K., Hao, T., Hirozane-Kishikawa, T. et al., Towards a proteome-scale map of the human protein-protein interaction network. Nature 2005, 437, 1173-1178.
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.-F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
-
3
-
-
34047202181
-
Deciphering protein-protein interactions. Part 1. Experimental techniques and databases
-
Shoemaker, B. A., Panchenko, A. R., Deciphering protein-protein interactions. Part 1. Experimental techniques and databases. PLoS Comput. Biol. 2007, 3, e42.
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Shoemaker, B.A.1
Panchenko, A.R.2
-
4
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
Yu, H., Braun, P. J., Yildirim, M. A., Lemmens, I. et al., High-quality binary protein interaction map of the yeast interactome network. Science 2008, 322, 104-110.
-
(2008)
Science
, vol.322
, pp. 104-110
-
-
Yu, H.1
Braun, P.J.2
Yildirim, M.A.3
Lemmens, I.4
-
5
-
-
58149305794
-
An empirical framework for binary interactome mapping
-
Venkatesan, K., Rual, J.-F., Vazquez, A., Stelzl, U. et al., An empirical framework for binary interactome mapping. Nat. Method 2009, 6, 83-90.
-
(2009)
Nat. Method
, vol.6
, pp. 83-90
-
-
Venkatesan, K.1
Rual, J.-F.2
Vazquez, A.3
Stelzl, U.4
-
6
-
-
76749150479
-
Computational approaches for detecting protein complexes from protein interaction networks: a survey
-
Li, X., Wu, M., Kwoh, C.-K., Ng, S.-K., Computational approaches for detecting protein complexes from protein interaction networks: a survey. BMC Genomics 2010, 11, S3.
-
(2010)
BMC Genomics
, vol.11
-
-
Li, X.1
Wu, M.2
Kwoh, C.-K.3
Ng, S.-K.4
-
7
-
-
0033518234
-
From molecular to modular cell biology
-
Hartwell, L. H., Hopfield, J. J., Leibler, S., Murray, A. W., From molecular to modular cell biology. Nature 1999, 402, c47-c52.
-
(1999)
Nature
, vol.402
-
-
Hartwell, L.H.1
Hopfield, J.J.2
Leibler, S.3
Murray, A.W.4
-
8
-
-
0142059836
-
Protein complexes and functional modules in molecular networks
-
Spirin, V., Mirny, L. A., Protein complexes and functional modules in molecular networks. Proc. Natl. Acad. Sci. USA 2003, 100, 12123-12128.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12123-12128
-
-
Spirin, V.1
Mirny, L.A.2
-
9
-
-
33645830948
-
CFinder: locating cliques and overlapping modules in biological networks
-
Adamcsek, B., Palla, G., Farkas, I. J., Derenyi, I., Vicsek, T., CFinder: locating cliques and overlapping modules in biological networks. Bioinformatics 2006, 22, 1021-1023.
-
(2006)
Bioinformatics
, vol.22
, pp. 1021-1023
-
-
Adamcsek, B.1
Palla, G.2
Farkas, I.J.3
Derenyi, I.4
Vicsek, T.5
-
10
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
Bader, G. D., Hogue, C. W., An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 2003, 4, 2.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
11
-
-
33744805096
-
Development and implementation of an algorithm for detection of protein complexes in large interaction networks
-
Altaf-Ul-Amin, M., Shinbo, Y., Mihara, K., Kurokawa, K., Kanaya, S., Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinformatics 2006, 7, 207.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 207
-
-
Altaf-Ul-Amin, M.1
Shinbo, Y.2
Mihara, K.3
Kurokawa, K.4
Kanaya, S.5
-
12
-
-
54349096842
-
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
-
Li, M., Chen, J., Wang, J., Hu, B., Chen, G., Modifying the DPClus algorithm for identifying protein complexes based on new topological structures. BMC Bioinformatics 2008, 9, 398.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 398
-
-
Li, M.1
Chen, J.2
Wang, J.3
Hu, B.4
Chen, G.5
-
13
-
-
0242268461
-
Predicting protein functions from redundancies in large-scale protein interaction networks
-
Samanta, M. P., Liang, S., Predicting protein functions from redundancies in large-scale protein interaction networks. Proc. Natl. Acad. Sci. USA 2003, 100, 12579-12583.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12579-12583
-
-
Samanta, M.P.1
Liang, S.2
-
14
-
-
13244292287
-
Clustering proteins from interaction networks for the prediction of cellular functions
-
Brun, C., Herrmann, C., Guenoche, A., Clustering proteins from interaction networks for the prediction of cellular functions. BMC Bioinformatics 2004, 5, 95.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 95
-
-
Brun, C.1
Herrmann, C.2
Guenoche, A.3
-
15
-
-
25444490121
-
The use of edge-betweenness clustering to investigate biological function in protein interaction networks
-
Dunn, R., Dudbridge, F., Sanderson, C. M., The use of edge-betweenness clustering to investigate biological function in protein interaction networks. BMC Bioinformatics 2005, 6, 39.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 39
-
-
Dunn, R.1
Dudbridge, F.2
Sanderson, C.M.3
-
16
-
-
10244264813
-
Protein complex prediction via cost-based clustering
-
King, A. D., Przulj, N., Jurisica, I., Protein complex prediction via cost-based clustering. Bioinformatics 2004, 20, 3013-3020.
-
(2004)
Bioinformatics
, vol.20
, pp. 3013-3020
-
-
King, A.D.1
Przulj, N.2
Jurisica, I.3
-
17
-
-
80052999068
-
-
A cluster algorithm for graphs. Tech. Rep. INS-R0010, National Research Institute for Mathematics and Computer Science in the Netherlands.
-
Van Dongen, S., A cluster algorithm for graphs. Tech. Rep. INS-R0010, National Research Institute for Mathematics and Computer Science in the Netherlands 2000.
-
(2000)
-
-
Van Dongen, S.1
-
18
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
Barabasi, A.-L., Oltvai, Z. N., Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 2004, 5, 101-113.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 101-113
-
-
Barabasi, A.-L.1
Oltvai, Z.N.2
-
19
-
-
78651328883
-
The BioGRID interaction database: 2011 update
-
Stark, C., Breitkreutz, B. J., Chatr-Aryamontri, A., Boucher, L. et al., The BioGRID interaction database: 2011 update. Nucleic Acids Res. 2011, 39, D698-D704.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Stark, C.1
Breitkreutz, B.J.2
Chatr-Aryamontri, A.3
Boucher, L.4
-
20
-
-
75549087047
-
The IntAct molecular interaction database in 2010
-
Aranda, B., Achuthan, P., Alam-Faruque, Y., Armean, I. et al., The IntAct molecular interaction database in 2010. Nucleic Acids Res. 2010, 38, D525-D531.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Aranda, B.1
Achuthan, P.2
Alam-Faruque, Y.3
Armean, I.4
-
21
-
-
75549083295
-
MINT: the molecular interaction database: 2009 update
-
Ceol, A., Chatr-aryamontri, A., Licata, L., Peluso, D. et al., MINT: the molecular interaction database: 2009 update. Nucleic Acids Res. 2010, 38, D532-D539.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Ceol, A.1
Chatr-aryamontri, A.2
Licata, L.3
Peluso, D.4
-
22
-
-
0347755535
-
The database of interacting proteins: 2004 update
-
Salwinski, L., Miller, C. S., Smith, A. J., Pettit, F. K. et al., The database of interacting proteins: 2004 update. Nucleic Acids Res. 2004, 32, D449-D451.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
-
23
-
-
38549170927
-
MIPS: analysis and annotation of genome information in 2007
-
Mewes, H. W., Dietmann, S., Frishman, D., Gregory, R. et al., MIPS: analysis and annotation of genome information in 2007. Nucleic Acids Res. 2008, 36, D196-D201.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Mewes, H.W.1
Dietmann, S.2
Frishman, D.3
Gregory, R.4
-
24
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong, H., Mason, S. P., Barabasi, A.-L., Oltvai, Z. N., Lethality and centrality in protein networks. Nature 2001, 411, 41-42.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.-L.3
Oltvai, Z.N.4
-
25
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
Watts, D. J., Strogatz, S. H., Collective dynamics of 'small-world' networks. Nature 1998, 393, 440-442.
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
26
-
-
33751255087
-
Evaluation of clustering algorithms for protein-protein interaction networks
-
Brohee, S., van Helden, J., Evaluation of clustering algorithms for protein-protein interaction networks. BMC Bioinformatics 2006, 7, 488.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 488
-
-
Brohee, S.1
van Helden, J.2
-
27
-
-
65849100458
-
Markov clustering versus affinity propagation for the partitioning of protein interaction graphs
-
Vlasblom, J., Wodak, S. J., Markov clustering versus affinity propagation for the partitioning of protein interaction graphs. BMC Bioinformatics 2009, 10, 99.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 99
-
-
Vlasblom, J.1
Wodak, S.J.2
-
28
-
-
75949120438
-
How and when should interactome-derived clusters be used to predict functional modules and protein function?
-
Song, J., Singh, M., How and when should interactome-derived clusters be used to predict functional modules and protein function? Bioinformatics 2009, 25, 3143-3150.
-
(2009)
Bioinformatics
, vol.25
, pp. 3143-3150
-
-
Song, J.1
Singh, M.2
|