Genetic interactions of arabidopsis thaliana damaged DNA binding protein 1B (DDB1B) with DDB1A, DET1, and COP1

G3: Genes, Genomes, Genetics

Volumn 3, Issue 3, 2013, Pages 493-503

  Ganpudi, Ashwin L ^a,b   Schroeder, Dana F ^a  

^a UNIVERSITY OF MANITOBA   (Canada)

^b DUPONT COMPANY   (United States)

Author keywords

COP1; DDB1A; DDB1B; DET1; Light

Indexed keywords

ANTHOCYANIN; ARABIDOPSIS PROTEIN; CHLOROPHYLL; COP1 PROTEIN, ARABIDOPSIS; DDB1A PROTEIN, ARABIDOPSIS; DDB1B PROTEIN, ARABIDOPSIS; DET1 PROTEIN; DET1 PROTEIN, ARABIDOPSIS; DNA BINDING PROTEIN; DNA BINDING PROTEIN 1A; DNA BINDING PROTEIN 1B; MANNITOL; MULTIPROTEIN COMPLEX; NUCLEAR PROTEIN; PLANT RNA; SODIUM CHLORIDE; UBIQUITIN PROTEIN LIGASE; UBIQUITIN PROTEIN LIGASE COP1; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ADULT PLANT; ALLELE; ARABIDOPSIS; ARABIDOPSIS THALIANA; ARTICLE; CHLOROPHYLL CONTENT; CONTROLLED STUDY; COP1; COTYLEDON; DARKNESS; DDB1A; DDB1B; DET1; DNA DAMAGE; DRUG EFFECT; FLOWER; GENE EXPRESSION REGULATION; GENE INTERACTION; GENETICS; GERMINATION; GROWTH, DEVELOPMENT AND AGING; HEAT; HEAT SENSITIVITY; HETEROZYGOTE; LIGHT; METABOLISM; MUTANT; NONHUMAN; PHENOTYPE; PHOTOMORPHOGENESIS; PHYSICAL SENSITIVITY; PLANT DEVELOPMENT; PLANT GENE; PLANT GROWTH; PROTEIN ANALYSIS; RNA EXTRACTION; ROOT GROWTH; SEEDLING; ULTRAVIOLET RADIATION; WILD TYPE;

ARABIDOPSIS THALIANA;

EID: 84883214105     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.112.005249     Document Type: Article

References (42)

1. Al Khateeb, W. M., and D. F. Schroeder, 2007 DDB2, DDB1A and DET1 exhibit complex genetic interactions during Arabidopsis development. Genetics 176: 231-242.
2. Al Khateeb, W. M., and D. F. Schroeder, 2009 Overexpression of Arabidopsis damaged DNA binding protein 1A (DDB1A) enhances UV tolerance. Plant Mol. Biol. 70: 371-383.
3. Alonso, J. M., A. N. Stepanova, T. J. Leisse, C. J. Kim, H. Chen et al., 2003 Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657.
4. Benvenuto, G., F. Formiggini, P. Laflamme, M. Malakhov, and C. Bowler, 2002 The photomorphogenesis regulator DET1 binds the amino-terminal tail of histone H2B in a nucleosome context. Curr. Biol. 12: 1529-1534.
5. Bernhardt, A., E. Lechner, P. Hano, V. Schade, M. Dieterle et al., 2006 CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana. Plant J. 47: 591-603.
6. Bernhardt, A., S. Mooney, and H. Hellmann, 2010 Arabidopsis DDB1a and DDB1b are critical for embryo development. Planta 232: 555-566.
7. Biedermann, S., and H. Hellmann, 2011 WD40 and CUL4-based E3 ligases: lubricating all aspects of life. Trends Plant Sci. 16: 38-46.
8. Castells, E., J. Molinier, G. Benvenuto, C. Bourbousse, G. Zabulon et al., 2011 The conserved factor DE-ETIOLATED 1 cooperates with CUL4-DDB1DDB2 to maintain genome integrity upon UV stress. EMBO J. 30: 1162-1172.
9. Chen, H., Y. Shen, X. Tang, L. Yu, J. Wang et al., 2006 Arabidopsis CULLIN4 forms an E3 ubiquitin ligase with RBX1 and the CDD complex in mediating light control of development. Plant Cell 18: 1991-2004.
10. Chen, H., X. Huang, G. Gusmaroli, W. Terzaghi, O. S. Lau et al., 2010 Arabidopsis CULLIN4-damaged DNA binding protein 1 interacts with CONSTITUTIVELY PHOTOMORPHOGENIC1-SUPRESSOR OF PHYA complexes to regulate photomorphogenesis and flowering time. Plant Cell 22: 108-123.
11. Chen, M., and J. Chory, 2011 Phytochrome signaling mechanisms and the control of plant development. Trends Cell Biol. 21: 664-671.
12. Chory, J., C. Peto, R. Feinbaum, L. Pratt, and F. Ausubel, 1989 Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light. Cell 58: 991-999.
13. Dumbliauskas, E., E. Lechner, M. Jaciubek, A. Berr, M. Pazhouhandeh et al., 2011 The Arabidopsis CUL4-DDB1 complex interacts with MSI1 and is required to maintain MEDEA parental imprinting. EMBO J. 30: 731-743.
14. Fankhauser, C., and J. J. Casal, 2004 Phenotypic characterization of a photomorphogenic mutant. Plant J. 39: 747-760.
15. Ganpudi, A. L., and D. F. Schroeder, 2011 UV damaged DNA repair and tolerance in plants, pp. 73-96 in Selected Topics in DNA Repair, edited by C. C. Chen, Intech, Croatia.
16. Kilian, J., D. Whitehead, J. Horak, D. Wanke, S. Weinl et al., 2007 The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J. 50: 347-363.
17. Koga, A., T. Ishibashi, S. Kimura, Y. Uchiyama, and K. Sakaguchi, 2006 Characterization of T-DNA insertion mutants and RNAi silenced plants of Arabidopsis thaliana UV damaged DNA binding protein 2 (At UV-DDB2). Plant Mol. Biol. 61: 227-240.
18. Kunz, B. A., M. D. Cahill, G. P. Mohr, J. M. Osmond, and J. E. Vonarx, 2006 Plant responses to UV radiation and links to pathogen resistance. Int. Rev. Cytol. 255: 1-40.
19. Lau, O. S., and X. W. Deng, 2012 The photomorphogenic repressors COP1 and DET1: 20 years later. Trends Plant Sci. 17: 584-593.
20. Lau, O. S., X. Huang, J. B. Charron, J. H. Lee, G. Li et al., 2011 Interaction of Arabidopsis DET1 with CCA1 and LHY in mediating transcriptional repression in the plant circadian clock. Mol. Cell 43: 703-712.
21. Lee, J., and P. Zhou, 2007 DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase. Mol. Cell 26: 775-780.
22. Lee, J. H., W. Terzaghi, G. Gusmaroli, J. B. Charron, H. J. Yoon et al., 2008 Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ligases. Plant Cell 20: 152-167.
23. Lee, J. H., H. Y. Yoon, W. Terzaghi, C. Martinez, M. Dai et al., 2010 DWA1 and DWA2, two Arabidopsis DWD protein components of CUL4-based E3 ligases, act together as negative regulators in ABA signal transduction. Plant Cell 22: 1716-1732.
24. Lee, J. H., W. Terzaghi, and X. W. Deng, 2011 DWA3, an Arabidopsis DWD protein, acts as a negative regulator in ABA signal transduction. Plant Sci. 180: 352-357.
25. Li, T., X. Chen, K. C. Garbutt, P. Zhou, and N. Zheng, 2006 Structure of DDB1 in complex with a paramyxovirus V protein: viral hijack of a propeller cluster in ubiquitin ligase. Cell 124: 105-117.
26. Mackinney, G., 1941 Absorption of light by chlorophyll solutions. J. Biol. Chem. 140: 315-322.
27. Maxwell, B. B., C. R. Andersson, D. S. Poole, S. A. Kay, and J. Chory, 2003 HY5, circadian clock-associated 1, and a cis element, DET1 dark response element, mediate DET1 regulation of Chlorophyll a/b-Binding Protein 2 expression. Plant Physiol. 133: 1565-1577.
28. McNellis, T. W., A. G. von Arnim, T. Araki, Y. Komeda, S. Misera et al., 1994 Genetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains. Plant Cell 6: 487-500.
29. Molinier, J., E. Lechner, E. Dumbliauskas, and P. Genschik, 2008 Regulation and role of Arabidopsis CUL4-DDB1A-DDB2 in maintaining genome integrity upon UV stress. PLoS Genet. 4(6): e1000093.
30. Nakagawa, M., and Y. Komeda, 2004 Flowering of Arabidopsis cop1 mutants in darkness. Plant Cell Physiol. 45: 398-406.
31. Pazhouhandeh, M., J. Molinier, A. Berr, and P. Genschik, 2011 MSI4/FVE interacts with CUL4-DDB1 and a PRC2-like complex to control epigenetic regulation of flowering time in Arabidopsis. Proc. Natl. Acad. Sci. USA 108: 3430-3435.
32. Pepper, A. E., and J. Chory, 1997 Extragenic suppressors of the Arabidopsis det1 mutant identify elements of flowering-time and light-response regulatory pathways. Genetics 145: 1125-1137.
33. Schroeder, D. F., M. Gahrtz, B. B. Maxwell, R. K. Cook, J. M. Kan et al., 2002 De-etiolated 1 (DET1) and damaged DNA binding protein 1 (DDB1) interact to regulate Arabidopsis photomorphogenesis. Curr. Biol. 12: 1462-1472.
34. Singh, S. K., S. Roy, S. R. Choudhury, and D. N. Sengupta, 2010 DNA repair and recombination in higher plants: insights from comparative genomics of Arabidopsis and rice. BMC Genomics 11: 443.
35. Stacey, M. G., S. N. Hicks, and A. G. von Arnim, 1999 Discrete domains mediate the light-responsive nuclear and cytoplasmic localization of Arabidopsis COP1. Plant Cell 11: 349-364.
36. Stacey, M. G., O. R. Kopp, T. H. Kim, and A. G. von Arnim, 2000 Modular domain structure of Arabidopsis COP1. Reconstitution of activity by fragment complementation and mutational analysis of a nuclear localization signal in planta. Plant Physiol. 124: 979-990.
37. Wagner, A., 2002 Selection and gene duplication: a view from the genome. Genome Biol. 3: reviews1012.
38. Wei, N., G. Serino, and X. W. Deng, 2008 The COP9 signalosome: more than a protease. Trends Biochem. Sci. 33: 592-600.
39. Weigel, D., and J. Glazebrook, 2002 Arabidopsis: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
40. Yanagawa, Y., J. A. Sullivan, S. Komatsu, G. Gusmaroli, G. Suzuki et al., 2004 Arabidopsis COP10 forms a complex with DDB1 and DET1 invivo and enhances the activity of ubiquitin conjugating enzymes. Genes Dev. 18: 2172-2181.
41. Yi, C., and X. W. Deng, 2005 COP1-from plant photomorphogenesis to mammalian tumorigenesis. Trends Cell Biol. 15: 618-625.
42. Zhang, Y., S. Feng, F. Chen, S. Chen, J. Wang et al., 2008 Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. Plant Cell 20: 1437-1455.