-
1
-
-
0030610813
-
b Transitions of Tryptophan: Applications of Theory and Experimental Observations to Fluorescence of Proteins
-
b Transitions of Tryptophan: Applications of Theory and Experimental Observations to Fluorescence of Proteins Methods Enzymol. 1997, 278, 113-150
-
(1997)
Methods Enzymol.
, vol.278
, pp. 113-150
-
-
Callis, P.R.1
-
2
-
-
0025255660
-
Subpicosecond Fluorescence Anisotropy Studies of Tryptophan in Water
-
Ruggiero, A. J.; Todd, D. C.; Fleming, G. R. Subpicosecond Fluorescence Anisotropy Studies of Tryptophan in Water J. Am. Chem. Soc. 1990, 112, 1003-1014
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 1003-1014
-
-
Ruggiero, A.J.1
Todd, D.C.2
Fleming, G.R.3
-
3
-
-
0037133342
-
Biological Water at the Protein Surface: Dynamical Solvation Probed Directly with Femtosecond Resolution
-
Pal, S. K.; Peon, J.; Zewail, A. H. Biological Water at the Protein Surface: Dynamical Solvation Probed Directly With Femtosecond Resolution Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 1763-1768
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 1763-1768
-
-
Pal, S.K.1
Peon, J.2
Zewail, A.H.3
-
4
-
-
0037143681
-
Hydration at the Surface of the Protein Monellin: Dynamics with Femtosecond Resolution
-
Peon, J.; Pal, S. K.; Zewail, A. H. Hydration at the Surface of the Protein Monellin: Dynamics With Femtosecond Resolution Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 10964-10969
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 10964-10969
-
-
Peon, J.1
Pal, S.K.2
Zewail, A.H.3
-
5
-
-
33748991142
-
Protein Surface Hydration Mapped by Site-Specific Mutations
-
Qiu, W. H.; Kao, Y. T.; Zhang, L. Y.; Yang, Y.; Wang, L. J.; Stites, W. E.; Zhong, D. P.; Zewail, A. H. Protein Surface Hydration Mapped by Site-Specific Mutations Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 13979-13984
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 13979-13984
-
-
Qiu, W.H.1
Kao, Y.T.2
Zhang, L.Y.3
Yang, Y.4
Wang, L.J.5
Stites, W.E.6
Zhong, D.P.7
Zewail, A.H.8
-
6
-
-
68049087927
-
Protein Hydration Dynamics and Molecular Mechanism of Coupled Water-Protein Fluctuations
-
Zhang, L. Y.; Yang, Y.; Kao, Y. T.; Wang, L. J.; Zhong, D. P. Protein Hydration Dynamics and Molecular Mechanism of Coupled Water-Protein Fluctuations J. Am. Chem. Soc. 2009, 131, 10677-10691
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 10677-10691
-
-
Zhang, L.Y.1
Yang, Y.2
Kao, Y.T.3
Wang, L.J.4
Zhong, D.P.5
-
7
-
-
84869195353
-
Validation of Response Function Construction and Probing Heterogeneous Protein Hydration by Intrinsic Tryptophan
-
Qin, Y. Z.; Chang, C. W.; Wang, L. J.; Zhong, D. P. Validation of Response Function Construction and Probing Heterogeneous Protein Hydration by Intrinsic Tryptophan J. Phys. Chem. B 2012, 116, 13320-13330
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 13320-13330
-
-
Qin, Y.Z.1
Chang, C.W.2
Wang, L.J.3
Zhong, D.P.4
-
8
-
-
84867391524
-
Femtosecond Conical Intersection Dynamics of Tryptophan in Proteins and Validation of Slowdown of Hydration Layer Dynamics
-
Yang, J.; Zhang, L. Y.; Wang, L. J.; Zhong, D. P. Femtosecond Conical Intersection Dynamics of Tryptophan in Proteins and Validation of Slowdown of Hydration Layer Dynamics J. Am. Chem. Soc. 2012, 134, 16460-16463
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 16460-16463
-
-
Yang, J.1
Zhang, L.Y.2
Wang, L.J.3
Zhong, D.P.4
-
9
-
-
68549118866
-
Considerations for the Construction of the Solvation Correlation Function and Implications for the Interpretation of Dielectric Relaxation in Proteins
-
Bose, S.; Adhikary, R.; Mukherjee, P.; Song, X. Y.; Petrich, J. W. Considerations for the Construction of the Solvation Correlation Function and Implications for the Interpretation of Dielectric Relaxation in Proteins J. Phys. Chem. B 2009, 113, 11061-11068
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 11061-11068
-
-
Bose, S.1
Adhikary, R.2
Mukherjee, P.3
Song, X.Y.4
Petrich, J.W.5
-
10
-
-
79955367769
-
Comparison of the Dielectric Response Obtained from Fluorescence Upconversion Measurements and Molecular Dynamics Simulations for Coumarin 153-Apomyoglobin Complexes and Structural Analysis of the Complexes by NMR and Fluorescence Methods
-
Bose, S.; Adhikary, R.; Barnes, C. A.; Fulton, D. B.; Hargrove, M. S.; Song, X. Y.; Petrich, J. W. Comparison of the Dielectric Response Obtained From Fluorescence Upconversion Measurements and Molecular Dynamics Simulations for Coumarin 153-Apomyoglobin Complexes and Structural Analysis of the Complexes by NMR and Fluorescence Methods J. Phys. Chem. B 2011, 115, 3630-3641
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 3630-3641
-
-
Bose, S.1
Adhikary, R.2
Barnes, C.A.3
Fulton, D.B.4
Hargrove, M.S.5
Song, X.Y.6
Petrich, J.W.7
-
12
-
-
33846380618
-
Nanosecond Relaxation Dynamics of Protein GB1 Identified by the Time-Dependent Red Shift in the Fluorescence of Tryptophan and 5-Fluorotryptophan
-
Toptygin, D.; Gronenborn, A. M.; Brand, L. Nanosecond Relaxation Dynamics of Protein GB1 Identified by the Time-Dependent Red Shift in the Fluorescence of Tryptophan and 5-Fluorotryptophan J. Phys. Chem. B 2006, 110, 26292-26302
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 26292-26302
-
-
Toptygin, D.1
Gronenborn, A.M.2
Brand, L.3
-
13
-
-
0037028161
-
Biological Water: Femtosecond Dynamics of Macromolecular Hydration
-
Pal, S. K.; Peon, J.; Bagchi, B.; Zewail, A. H. Biological Water: Femtosecond Dynamics of Macromolecular Hydration J. Phys. Chem. B 2002, 106, 12376-12395
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 12376-12395
-
-
Pal, S.K.1
Peon, J.2
Bagchi, B.3
Zewail, A.H.4
-
14
-
-
2342527858
-
Dynamics of Water in Biological Recognition
-
Pal, S. K.; Zewail, A. H. Dynamics of Water in Biological Recognition Chem. Rev. 2004, 104, 2099-2123
-
(2004)
Chem. Rev.
, vol.104
, pp. 2099-2123
-
-
Pal, S.K.1
Zewail, A.H.2
-
15
-
-
25444496478
-
Molecular Origin of Time-Dependent Fluorescence Shifts in Proteins
-
Nilsson, L.; Halle, B. Molecular Origin of Time-Dependent Fluorescence Shifts in Proteins Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 13867-13872
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 13867-13872
-
-
Nilsson, L.1
Halle, B.2
-
16
-
-
33745462120
-
A Molecular Dynamics Study of Lys-Trp-Lys: Structure and Dynamics in Solution Following Photoexcitation
-
Hassanali, A. A.; Li, T. P.; Zhong, D. P.; Singer, S. J. A Molecular Dynamics Study of Lys-Trp-Lys: Structure and Dynamics in Solution Following Photoexcitation J. Phys. Chem. B 2006, 110, 10497-10508
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 10497-10508
-
-
Hassanali, A.A.1
Li, T.P.2
Zhong, D.P.3
Singer, S.J.4
-
17
-
-
33947425139
-
Hydration Dynamics and Time Scales of Coupled Water-Protein Fluctuations
-
Li, T. P.; Hassanali, A. A. P.; Kao, Y. T.; Zhong, D. P.; Singer, S. J. Hydration Dynamics and Time Scales of Coupled Water-Protein Fluctuations J. Am. Chem. Soc. 2007, 129, 3376-3382
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 3376-3382
-
-
Li, T.P.1
Hassanali, A.A.P.2
Kao, Y.T.3
Zhong, D.P.4
Singer, S.J.5
-
18
-
-
33847388020
-
Probing Polar Solvation Dynamics in Proteins: A Molecular Dynamics Simulation Analysis
-
Golosov, A. A.; Karplus, M. Probing Polar Solvation Dynamics in Proteins: A Molecular Dynamics Simulation Analysis J. Phys. Chem. B 2007, 111, 1482-1490
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 1482-1490
-
-
Golosov, A.A.1
Karplus, M.2
-
19
-
-
34547485422
-
How Protein Surfaces Induce Anomalous Dynamics of Hydration Water
-
Pizzitutti, F.; Marchi, M.; Sterpone, F.; Rossky, P. J. How Protein Surfaces Induce Anomalous Dynamics of Hydration Water J. Phys. Chem. B 2007, 111, 7584-7590
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 7584-7590
-
-
Pizzitutti, F.1
Marchi, M.2
Sterpone, F.3
Rossky, P.J.4
-
20
-
-
58149308674
-
Origin of Slow Relaxation Following Photoexcitation of W7 in Myoglobin and the Dynamics of Its Hydration Layer
-
Li, T. P.; Hassanali, A. A.; Singer, S. J. Origin of Slow Relaxation Following Photoexcitation of W7 in Myoglobin and the Dynamics of Its Hydration Layer J. Phys. Chem. B 2008, 112, 16121-16134
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 16121-16134
-
-
Li, T.P.1
Hassanali, A.A.2
Singer, S.J.3
-
21
-
-
67149126766
-
Does the Dynamic Stokes Shift Report on Slow Protein Hydration Dynamics?
-
Halle, B.; Nilsson, L. Does the Dynamic Stokes Shift Report on Slow Protein Hydration Dynamics? J. Phys. Chem. B 2009, 113, 8210-8213
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 8210-8213
-
-
Halle, B.1
Nilsson, L.2
-
22
-
-
77956073657
-
Picosecond Protein Dynamics: The Origin of the Time-Dependent Spectral Shift in the Fluorescence of the Single Trp in the Protein GB1
-
Toptygin, D.; Woolf, T. B.; Brand, L. Picosecond Protein Dynamics: The Origin of the Time-Dependent Spectral Shift in the Fluorescence of the Single Trp in the Protein GB1 J. Phys. Chem. B 2010, 114, 11323-11337
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 11323-11337
-
-
Toptygin, D.1
Woolf, T.B.2
Brand, L.3
-
23
-
-
79751526738
-
Biological Water: A Critique
-
Zhong, D. P.; Pal, S. K.; Zewail, A. H. Biological Water: A Critique Chem. Phys. Lett. 2011, 503, 1-11
-
(2011)
Chem. Phys. Lett.
, vol.503
, pp. 1-11
-
-
Zhong, D.P.1
Pal, S.K.2
Zewail, A.H.3
-
24
-
-
80052521875
-
Nanosecond Stokes Shift Dynamics, Dynamical Transition, and Gigantic Reorganization Energy of Hydrated Heme Proteins
-
Matyushov, D. V. Nanosecond Stokes Shift Dynamics, Dynamical Transition, and Gigantic Reorganization Energy of Hydrated Heme Proteins J. Phys. Chem. B 2011, 115, 10715-10724
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 10715-10724
-
-
Matyushov, D.V.1
-
25
-
-
0035028745
-
Mechanisms of Tryptophan Fluorescence Shifts in Proteins
-
Vivian, J. T.; Callis, P. R. Mechanisms of Tryptophan Fluorescence Shifts in Proteins Biophys. J. 2001, 80, 2093-2109
-
(2001)
Biophys. J.
, vol.80
, pp. 2093-2109
-
-
Vivian, J.T.1
Callis, P.R.2
-
26
-
-
33646369664
-
Dependence of Tryptophan Emission Wavelength on Conformation in Cyclic Hexapeptides
-
Pan, C. P.; Callis, P. R.; Barkley, M. D. Dependence of Tryptophan Emission Wavelength on Conformation in Cyclic Hexapeptides J. Phys. Chem. B 2006, 110, 7009-7016
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 7009-7016
-
-
Pan, C.P.1
Callis, P.R.2
Barkley, M.D.3
-
27
-
-
78650859577
-
Predicting Fluorescence Lifetimes and Spectra of Biopolymers
-
Callis, P. R. Predicting Fluorescence Lifetimes and Spectra of Biopolymers Methods Enzymol. 2011, 487, 1-38
-
(2011)
Methods Enzymol.
, vol.487
, pp. 1-38
-
-
Callis, P.R.1
-
28
-
-
84857692227
-
Simulations of Tryptophan Fluorescence Dynamics during Folding of the Villin Headpiece
-
Tusell, J. R.; Callis, P. R. Simulations of Tryptophan Fluorescence Dynamics During Folding of the Villin Headpiece J. Phys. Chem. B 2012, 116, 2586-2594
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 2586-2594
-
-
Tusell, J.R.1
Callis, P.R.2
-
29
-
-
46249092554
-
Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
-
Hess, B.; Kutzner, C.; van der Spoel, D.; Lindahl, E. Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation J. Chem. Theory Comp. 2008, 4, 435-447
-
(2008)
J. Chem. Theory Comp.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
30
-
-
0242593434
-
Development and Current Status of the CHARMM Force Field for Nucleic Acids
-
MacKerell, A. D.; Banavali, N.; Foloppe, N. Development and Current Status of the CHARMM Force Field for Nucleic Acids Biopolymers 2001, 56, 257-265
-
(2001)
Biopolymers
, vol.56
, pp. 257-265
-
-
Mackerell, A.D.1
Banavali, N.2
Foloppe, N.3
-
31
-
-
22744459657
-
Intermediate Neglect of Differential Overlap (INDO) Technique for Spectroscopy: Pyrrole and the Azines
-
Ridley, J.; Zerner, M. Intermediate Neglect of Differential Overlap (INDO) Technique for Spectroscopy: Pyrrole and the Azines Theor. Chim. Acta (Berlin) 1973, 32, 111-134
-
(1973)
Theor. Chim. Acta (Berlin)
, vol.32
, pp. 111-134
-
-
Ridley, J.1
Zerner, M.2
-
32
-
-
0025757287
-
Effects of the Crystal Field on Transition Moments in 9- Ethylguanine
-
Theiste, D.; Callis, P. R.; Woody, R. W. Effects of the Crystal Field on Transition Moments in 9- Ethylguanine J. Am. Chem. Soc. 1991, 113, 3260-3267
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 3260-3267
-
-
Theiste, D.1
Callis, P.R.2
Woody, R.W.3
-
33
-
-
0001574848
-
Theoretical Study of the Crystal Field Effects on the Transition Dipole Moments in Methylated Adenines
-
Sreerama, N.; Woody, R. W.; Callis, P. R. Theoretical Study of the Crystal Field Effects on the Transition Dipole Moments in Methylated Adenines J. Phys. Chem. 1994, 98, 10397-10407
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 10397-10407
-
-
Sreerama, N.1
Woody, R.W.2
Callis, P.R.3
-
34
-
-
34447331054
-
The Emitting State of Tryptophan in Proteins with Highly Blue-Shifted Fluorescence
-
Broos, J.; Tveen-Jensen, K.; de Waal, E.; Hesp, B. H.; Jackson, J. B.; Canters, G. W.; Callis, P. R. The Emitting State of Tryptophan in Proteins With Highly Blue-Shifted Fluorescence Angew. Chem., Int. Ed. 2007, 46, 5137-5139
-
(2007)
Angew. Chem., Int. Ed.
, vol.46
, pp. 5137-5139
-
-
Broos, J.1
Tveen-Jensen, K.2
De Waal, E.3
Hesp, B.H.4
Jackson, J.B.5
Canters, G.W.6
Callis, P.R.7
-
35
-
-
79953056261
-
Correlation of Tryptophan Fluorescence Spectral Shifts and Lifetimes Arising Directly from Heterogeneous Environment
-
Pan, C. P.; Muino, P. L.; Barkley, M. D.; Callis, P. R. Correlation of Tryptophan Fluorescence Spectral Shifts and Lifetimes Arising Directly From Heterogeneous Environment J. Phys. Chem. B 2011, 115, 3245-3253
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 3245-3253
-
-
Pan, C.P.1
Muino, P.L.2
Barkley, M.D.3
Callis, P.R.4
-
36
-
-
0017411710
-
Protein Data Bank - Computer-Based Archival File for Macromolecular Structures
-
Bernstein, F. C.; Koetzle, T. F.; Williams, G. J. B.; Meyer, E. F.; Brice, M. D.; Rodgers, J. R.; Kennard, O.; Shimanouchi, T.; Tasumi, M. Protein Data Bank-Computer-Based Archival File for Macromolecular Structures J. Mol. Biol. 1977, 112, 535-542
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer, E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
37
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An Environment for Comparative Protein Modeling
-
Guex, N.; Peitsch, M. C. SWISS-MODEL and the Swiss-PdbViewer: An Environment for Comparative Protein Modeling Electrophoresis 1997, 18, 2714-2723
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
38
-
-
0009869207
-
Electrostatic Free Energy and Other Properties of States Having Nonequilibrium Polarization 0.1
-
Marcus, R. A. Electrostatic Free Energy and Other Properties of States Having Nonequilibrium Polarization 0.1 J. Chem. Phys. 1956, 24, 979-989
-
(1956)
J. Chem. Phys.
, vol.24
, pp. 979-989
-
-
Marcus, R.A.1
-
39
-
-
0001401935
-
Free Energy of Nonequilibrium Polarization Systems 0.3. Statistical Mechanics of Homogeneous and Electrode Systems
-
Marcus, R. A. Free Energy of Nonequilibrium Polarization Systems 0.3. Statistical Mechanics of Homogeneous and Electrode Systems J. Chem. Phys. 1963, 39, 1734-1740
-
(1963)
J. Chem. Phys.
, vol.39
, pp. 1734-1740
-
-
Marcus, R.A.1
-
40
-
-
0006468171
-
Interactions in Polar Media 0.1. Interparticle Interaction Energy
-
Marcus, R. A. Interactions in Polar Media 0.1. Interparticle Interaction Energy J. Chem. Phys. 1963, 38, 1335-1340
-
(1963)
J. Chem. Phys.
, vol.38
, pp. 1335-1340
-
-
Marcus, R.A.1
-
41
-
-
36849117782
-
On Theory of Shifts and Broadening of Electronic Spectra of Polar Solutes in Polar Media
-
Marcus, R. A. On Theory of Shifts and Broadening of Electronic Spectra of Polar Solutes in Polar Media J. Chem. Phys. 1965, 43, 1261-1274
-
(1965)
J. Chem. Phys.
, vol.43
, pp. 1261-1274
-
-
Marcus, R.A.1
-
42
-
-
0040353151
-
Theory of Oxidation-Reduction Reactions Involving Electron Transfer 0.4. A Statistical-Mechanical Basis for Treating Contributions from Solvent, Ligands, and Inert Salt
-
Marcus, R. A. Theory of Oxidation-Reduction Reactions Involving Electron Transfer 0.4. A Statistical-Mechanical Basis for Treating Contributions From Solvent, Ligands, and Inert Salt Discuss. Faraday Soc. 1960, 21-31
-
(1960)
Discuss. Faraday Soc.
, pp. 21-31
-
-
Marcus, R.A.1
-
43
-
-
1842525698
-
Reorganization Free-Energy for Electron Transfers at Liquid Liquid and Dielectric Semiconductor Liquid Interfaces
-
Marcus, R. A. Reorganization Free-Energy for Electron Transfers at Liquid Liquid and Dielectric Semiconductor Liquid Interfaces J. Phys. Chem. 1990, 94, 1050-1055
-
(1990)
J. Phys. Chem.
, vol.94
, pp. 1050-1055
-
-
Marcus, R.A.1
-
44
-
-
84883141910
-
Trp Fluorescence in GB1: Nanosecond Dynamics Strongly Depend on pH while 30Ps Relaxation Is Constant
-
Biesso, A.; Muino, P. L.; Xu, J. H.; Callis, P. R.; Knutson, J. Trp Fluorescence in GB1: Nanosecond Dynamics Strongly Depend on pH While 30Ps Relaxation Is Constant Biophys. J. 2013, 104, 344A-345A
-
(2013)
Biophys. J.
, vol.104
-
-
Biesso, A.1
Muino, P.L.2
Xu, J.H.3
Callis, P.R.4
Knutson, J.5
|