Quantification of saccharopolyspora rectivirgula in composting plants: Assessment of the relevance of s. rectivirgula

Annals of Occupational Hygiene

Volumn 57, Issue 7, 2013, Pages 875-883

  Schäfer, Jenny ^a   Klug, Kerstin ^a   Van Kampen, Vera ^b   Jäckel, Udo ^a  

^a FEDERAL INSTITUTE FOR OCCUPATIONAL SAFETY AND HEALTH   (Germany)

^b INSTITUT DER RUHR UNIVERSITÄT BOCHUM IPA   (Germany)

Author keywords

bioaerosols; compost; exposure estimation; microbial exposure; microorganisms; qPCR; risk management; total cell count

Indexed keywords

BIOAEROSOLS; CELL COUNT; EXPOSURE ESTIMATION; MICROBIAL EXPOSURE; QPCR;

AEROSOLS; AGRICULTURE; CELLS; COMPOSTING; CYTOLOGY; DNA; HEALTH; MATERIALS HANDLING; MICROORGANISMS; RISK MANAGEMENT;

POLYMERASE CHAIN REACTION;

BACTERIAL DNA;

AEROSOL; AGRICULTURE; AIR POLLUTANT; ARTICLE; BIOAEROSOLS; COMPOST; ENVIRONMENTAL MONITORING; EXPOSURE ESTIMATION; GERMANY; HUMAN; INDOOR AIR POLLUTION; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIAL EXPOSURE; MICROBIOLOGY; MICROORGANISMS; QPCR; REAL TIME POLYMERASE CHAIN REACTION; RISK MANAGEMENT; SACCHAROPOLYSPORA; TOTAL CELL COUNT;

BIOAEROSOLS; COMPOST; EXPOSURE ESTIMATION; MICROBIAL EXPOSURE; MICROORGANISMS; QPCR; RISK MANAGEMENT; TOTAL CELL COUNT;

AEROSOLS; AGRICULTURE; AIR MICROBIOLOGY; AIR POLLUTANTS, OCCUPATIONAL; AIR POLLUTION, INDOOR; DNA, BACTERIAL; ENVIRONMENTAL MONITORING; GERMANY; HUMANS; REAL-TIME POLYMERASE CHAIN REACTION; SACCHAROPOLYSPORA; SOIL MICROBIOLOGY;

EID: 84883147605     PISSN: 00034878     EISSN: 14753162     Source Type: Journal    
DOI: 10.1093/annhyg/met010     Document Type: Article

References (34)

1. Albrecht A, Witzenberger R, Bernzen U et al. (2007) Detection of airborne microbes in a composting facility by cultivation based and cultivation- independent methods. Ann Agric Environ Med; 14: 81-5. (Pubitemid 47035660)
2. Betelli L, Duquenne P, Grenouillet F et al. (2013) Development and evaluation of a method for the quanti-fcation of airborne Thermoactinomyces vulgaris by realtime PCR. J Microbiol Methods; 92: 25-32.
3. Blais L P, Veillette M, Marsolais D et al. (2012) Characterization of bioaerosols from dairy barns: reconstructing the puzzle of occupational respiratory diseases by using molecular approaches. Appl Environ Microbiol; 78: 3242-8.
4. Bollet C, Gevaudan MJ, de Lamballerie X et al. (1991) A simple method for the isolation of chromosomal DNA from gram positive or acid-fast bacteria. Nucleic Acids Res; 19: 1955.
5. Bünger J, Antlauf-Lammers M, Schulz TG et al. (2000) Health complaints and immunological markers of exposure to bioaerosols among biowaste collectors and compost workers. Occup Environ Med; 57: 458-64. (Pubitemid 30410707)
6. Cormier Y, Bélanger J, Durand P. (1985) Factors infuenc-ing the development of serum precipitins to farmer's lung antigen in Quebec dairy farmers. Thorax; 40: 138-42. (Pubitemid 15114121)
7. Dees PM, Ghiorse WC. (2001) Microbial diversity in hot synthetic compost as revealed by PCR-amplifed rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiol Ecol; 35: 207-16. (Pubitemid 32289258)
8. Deutsches Institut für Normung (1993) DIN EN 481: Workplaces atmospheres; size fraction defnitions for measurement of airborne particles. German version EN 481.
9. Dineen SM, Aranda R, Anders DL et al. (2010) An evaluation of commercial DNA extraction kits for the isolation of bacterial spore DNA from soil. J Appl Microbiol; 109: 1886-96.
10. Douwes J, Thorne P, Pearce N et al. (2003) Bioaerosol health effects and exposure assessment: progress and prospects. Ann Occup Hyg; 47: 187-200. (Pubitemid 36554261)
11. Duchaine C, Meriaux A, Brochu G et al. (1999) Saccharopolyspora rectivirgula from Quebec dairy barns: application of simplifed criteria for the identifca-tion of an agent responsible for farmer's lung disease. J Med Microbiol; 48: 173-80. (Pubitemid 29371602)
12. Eduard W, Heederik D, Duchaine C et al. (2012) Bioaerosol exposure assessment in the workplace: the past, present and recent advances. J Environ Monit; 14: 334-9.
13. Egert M, Friedrich M W. (2005) Post-amplifcation Klenow fragment treatment alleviates PCR bias caused by partially single-stranded amplicons. J Microbiol Methods; 61: 69-75. (Pubitemid 40164877)
14. Einen J, Thorseth IH, Ovreås L. (2008) Enumeration of Archaea and Bacteria in seafoor basalt using real-time quantitative PCR and fuorescence microscopy. FEMS Microbiol Lett; 282: 182-7. (Pubitemid 351569454)
15. Fallschissel K, Kämpfer P, Jäckel U. (2009) Direct detection of salmonella cells in the air of livestock stables by real-time PCR. Ann Occup Hyg; 53: 859-68.
16. Lacey J, Crook B. (1988) Fungal and actinomycete spores as pollutants of the workplace and occupational allergens. Ann Occup Hyg; 32: 515-33. (Pubitemid 19020615)
17. Lane DJ. (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M, editors. Nucleic acid techniques in bacterial systematics. John Wiley & Sons. New York, pp 115-175
18. Le Goff O, Godon JJ, Steyer JP et al. (2011) New specifc indicators for qPCR monitoring of airborne microorganisms emitted by composting plants. Atmos Environ; 45: 5342-50.
19. Martin E, Fallschissel K, Kampfer P et al. (2010) Detection of Jeotgalicoccus spp. in poultry house air. Syst Appl Microbiol; 33: 188-92.
20. Martin E, Jäckel U. (2011) Characterization of bacterial contaminants in the air of a duck hatchery by cultivation based and molecular methods. J Environ Monit; 13: 464-70.
21. Mumy KL, Findlay RH. (2004) Convenient determination of DNA extraction effciency using an external DNA recovery standard and quantitative-competitive PCR. J Microbiol Methods; 57: 259-68. (Pubitemid 38446871)
22. Neidhardt F, Ingraham J, Schaechter M (1990) Physiology of the bacterial cell: a molecular approach. Sunderland, MA: Sinauer Associates, Inc.
23. Pankhurst LJ, Deacon LJ, Liu J et al. (2011) Spatial variations in airborne microorganism and endotoxin concentrations at green waste composting facilities. Int J Hyg Environ Health; 214: 376-83.
24. Persoons R, Parat S, Stoklov M et al. (2010) Critical working tasks and determinants of exposure to bioaerosols and MVOC at composting facilities. Int J Hyg Environ Health; 213: 338-47.
25. Rintala H, Nevalainen A. (2006) Quantitative measurement of streptomycetes using real-time PCR. J Environ Monit; 8: 745-9. (Pubitemid 44024883)
26. Schäfer J, Jäckel U, Kämpfer P. (2010) Development of a new PCR primer system for selective amplifcation of Actinobacteria. FEMS Microbiol Lett; 311: 103-12.
27. Schäfer J, Kämpfer P, Jäckel U. (2011) Detection of Saccharopolyspora rectivirgula by quantitative real-time PCR. Ann Occup Hyg; 55: 612-9.
28. Schlosser O, Huyard A, Cartnick K et al. (2009) Bioaerosol in composting facilities: occupational health risk assessment. Water Environ Res; 81: 866-77.
29. Schneegurt MA, Dore S Y, Kulpa CF Jr. (2003) Direct extraction of DNA from soils for studies in microbial ecology. Curr Issues Mol Biol; 5: 1-8. (Pubitemid 36335929)
30. Swan JRM, Kelsey A, Crook B et al. (2003) Occupational and environmental exposure to bioaerosols from composts and potential health effects: a critical review of published data. Health & Safety Executive Research Report 130, Sudbury, UK
31. Töwe S, Wallisch S, Bannert A et al. (2011) Improved protocol for the simultaneous extraction and column-based separation of DNA and RNA from different soils. J Microbiol Methods; 84: 406-12.
32. van Kampen V, Deckert A, Hoffmeyer F et al. (2012) Symptoms, spirometry, and serum antibody concentrations among compost workers exposed to organic dust. J Toxicol Environ Health A; 75: 492-500.
33. Weber S, Kullman G, Petsonk E et al. (1993) Organic dust exposures from compost handling-case presentation and respiratory exposure assessment. Am J Ind Med; 24: 365-74. (Pubitemid 23284632)
34. www.kompost.de