-
1
-
-
0002154022
-
A new method for non-parametric multivariate analysis of variance
-
Anderson M.J. A new method for non-parametric multivariate analysis of variance. Austral. Ecol. 2001, 26:32-46.
-
(2001)
Austral. Ecol.
, vol.26
, pp. 32-46
-
-
Anderson, M.J.1
-
2
-
-
0141966686
-
Analysis of ecological communities: Bruce McCune and James B. Grace, MjM Software Design
-
Anderson M.J. Analysis of ecological communities: Bruce McCune and James B. Grace, MjM Software Design. J. Exp. Mar. Biol. Ecol. 2003, 289:303-305.
-
(2003)
J. Exp. Mar. Biol. Ecol.
, vol.289
, pp. 303-305
-
-
Anderson, M.J.1
-
4
-
-
34447559993
-
Improved purification and PCR amplification of DNA from environmental samples
-
Arbeli Z., Fuentes C.L. Improved purification and PCR amplification of DNA from environmental samples. FEMS Microbiol. Lett. 2007, 272:269-275.
-
(2007)
FEMS Microbiol. Lett.
, vol.272
, pp. 269-275
-
-
Arbeli, Z.1
Fuentes, C.L.2
-
5
-
-
33646884601
-
DNA extraction from low-biomass carbonate rock: an improved method with reduced contamination and the low-biomass contaminant database
-
Barton H.A., Taylor N.M., Lubbers B.R., Pemberton A.C. DNA extraction from low-biomass carbonate rock: an improved method with reduced contamination and the low-biomass contaminant database. J. Microbiol. Methods. 2006, 66:21-31.
-
(2006)
J. Microbiol. Methods.
, vol.66
, pp. 21-31
-
-
Barton, H.A.1
Taylor, N.M.2
Lubbers, B.R.3
Pemberton, A.C.4
-
6
-
-
27444448084
-
Effects of model root exudates on structure and activity of a soil diazotroph community
-
Bürgmann H., Meier S., Bunge M., Widmer F., Zeyer J. Effects of model root exudates on structure and activity of a soil diazotroph community. Environ. Microbiol. 2005, 7:1711-1724.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 1711-1724
-
-
Bürgmann, H.1
Meier, S.2
Bunge, M.3
Widmer, F.4
Zeyer, J.5
-
7
-
-
36348995417
-
DNA extraction method affects microbial community profiles from soils and sediment
-
Carrigg C., Rice O., Kavanagh S., Collins G., Flaherty O'., V. DNA extraction method affects microbial community profiles from soils and sediment. Appl. Microbiol. Biotechnol. 2007, 77:955-964.
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.77
, pp. 955-964
-
-
Carrigg, C.1
Rice, O.2
Kavanagh, S.3
Collins, G.4
Flaherty, O.V.5
-
8
-
-
0033538883
-
Automated nucleic acid isolation and purification from soil extracts using renewable affinity microcolumns in a sequential injection system
-
Chandler D.P., Schuck B.L., Brockman F.J., Bruckner-Lea C.J. Automated nucleic acid isolation and purification from soil extracts using renewable affinity microcolumns in a sequential injection system. Talanta 1999, 49:969-983.
-
(1999)
Talanta
, vol.49
, pp. 969-983
-
-
Chandler, D.P.1
Schuck, B.L.2
Brockman, F.J.3
Bruckner-Lea, C.J.4
-
9
-
-
34547593764
-
REPK: an analytical web server to select restriction endonucleases for terminal restriction fragment length polymorphism analysis
-
Collins R.E., Rocap G. REPK: an analytical web server to select restriction endonucleases for terminal restriction fragment length polymorphism analysis. Nucl. Acids Res. 2007, 35:58-62.
-
(2007)
Nucl. Acids Res.
, vol.35
, pp. 58-62
-
-
Collins, R.E.1
Rocap, G.2
-
10
-
-
19944409539
-
An optimized protocol for simultaneous extraction of DNA and RNA from soils
-
Costa R., Gomes N.C.M., Milling A., Smalla K. An optimized protocol for simultaneous extraction of DNA and RNA from soils. Braz. J. Microbiol. 2004, 35:230-234.
-
(2004)
Braz. J. Microbiol.
, vol.35
, pp. 230-234
-
-
Costa, R.1
Gomes, N.C.M.2
Milling, A.3
Smalla, K.4
-
11
-
-
74449089796
-
Improved detection of microbial DNA after bead-beating before DNA isolation
-
de Boer R., Peters R., Gierveld S., Schuurman T., Kooistra-Smid M., Savelkoul P. Improved detection of microbial DNA after bead-beating before DNA isolation. J. Microbiol. Methods. 2010, 80:209-211.
-
(2010)
J. Microbiol. Methods.
, vol.80
, pp. 209-211
-
-
de Boer, R.1
Peters, R.2
Gierveld, S.3
Schuurman, T.4
Kooistra-Smid, M.5
Savelkoul, P.6
-
12
-
-
70349481520
-
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria
-
Delmotte N., Knief C., Chaffron S., Innerebner G., Roschitzki B., Schlapbach R., von Mering C., Vorholt J.A. Community proteogenomics reveals insights into the physiology of phyllosphere bacteria. Proc. Natl Acad. Sci. USA 2009, 106:16428-16433.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 16428-16433
-
-
Delmotte, N.1
Knief, C.2
Chaffron, S.3
Innerebner, G.4
Roschitzki, B.5
Schlapbach, R.6
von Mering, C.7
Vorholt, J.A.8
-
13
-
-
0242513076
-
Extraction of ribosomal RNA and genomic DNA from soil for studying the diversity of the indigenous bacterial community
-
Duarte G.F., Rosado A.S., Seldin L., Keijzer-Wolters A.C., van Elsas J.D. Extraction of ribosomal RNA and genomic DNA from soil for studying the diversity of the indigenous bacterial community. J. Microbiol. Methods. 1998, 32:21-29.
-
(1998)
J. Microbiol. Methods.
, vol.32
, pp. 21-29
-
-
Duarte, G.F.1
Rosado, A.S.2
Seldin, L.3
Keijzer-Wolters, A.C.4
van Elsas, J.D.5
-
14
-
-
58149302711
-
Comparison of T-RFLP and DGGE techniques to assess denitrifier community composition in soil
-
Enwall K., Hallin S. Comparison of T-RFLP and DGGE techniques to assess denitrifier community composition in soil. Lett. Appl. Microbiol. 2009, 48:145-148.
-
(2009)
Lett. Appl. Microbiol.
, vol.48
, pp. 145-148
-
-
Enwall, K.1
Hallin, S.2
-
15
-
-
0034468557
-
Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
-
Griffiths R.I., Whiteley A.S., O'Donnell A.G., Bailey M.J. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl. Environ. Microbiol. 2000, 66:5488-5491.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 5488-5491
-
-
Griffiths, R.I.1
Whiteley, A.S.2
O'Donnell, A.G.3
Bailey, M.J.4
-
16
-
-
0032827282
-
Evaluation of purification procedures for DNA extracted from organic rich samples: Interference with humic substances
-
Harry M., Gambier B., Bourezgui Y., Garnier-Sillam E. Evaluation of purification procedures for DNA extracted from organic rich samples: Interference with humic substances. Analusis. 1999, 27:439-442.
-
(1999)
Analusis.
, vol.27
, pp. 439-442
-
-
Harry, M.1
Gambier, B.2
Bourezgui, Y.3
Garnier-Sillam, E.4
-
17
-
-
33747335398
-
Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils
-
Henry S., Bru D., Stres B., Hallet S., Philippot L. Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils. Appl. Environ. Microbiol. 2006, 72:5181-5189.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5181-5189
-
-
Henry, S.1
Bru, D.2
Stres, B.3
Hallet, S.4
Philippot, L.5
-
18
-
-
34250730303
-
Exploring microbial diversity in volcanic environments: a review of methods in DNA extraction
-
Herrera A., Cockell C.S. Exploring microbial diversity in volcanic environments: a review of methods in DNA extraction. J. Microbiol. Methods. 2007, 70:1-12.
-
(2007)
J. Microbiol. Methods.
, vol.70
, pp. 1-12
-
-
Herrera, A.1
Cockell, C.S.2
-
19
-
-
0023866522
-
DNA probe method for the detection of specific microorganisms in the soil bacterial community
-
Holben W.E., Jansson J.K., Chelm B.K., Tiedje J.M. DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl. Environ. Microbiol. 1988, 54:703-711.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 703-711
-
-
Holben, W.E.1
Jansson, J.K.2
Chelm, B.K.3
Tiedje, J.M.4
-
20
-
-
0035487188
-
Simultaneous recovery of RNA and DNA from soils and sediments
-
Hurt R.A., Qiu X., Wu L., Roh Y., Palumbo A.V., Tiedje J.M., Zhou J. Simultaneous recovery of RNA and DNA from soils and sediments. Appl. Environ. Microbiol. 2001, 67:4495-4503.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4495-4503
-
-
Hurt, R.A.1
Qiu, X.2
Wu, L.3
Roh, Y.4
Palumbo, A.V.5
Tiedje, J.M.6
Zhou, J.7
-
21
-
-
77952278019
-
Effect of DNA extraction method on the apparent microbial diversity of soil
-
Inceoglu O., Hoogwout E.F., Hill P., van Elsas J.D. Effect of DNA extraction method on the apparent microbial diversity of soil. Appl. Environ. Microbiol. 2010, 76:3378-3382.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 3378-3382
-
-
Inceoglu, O.1
Hoogwout, E.F.2
Hill, P.3
van Elsas, J.D.4
-
22
-
-
49749112308
-
Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification
-
Jones C.M., Stres B., Rosenquist M., Hallin S. Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification. Mol. Biol. Evol. 2008, 25:1955-1966.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1955-1966
-
-
Jones, C.M.1
Stres, B.2
Rosenquist, M.3
Hallin, S.4
-
23
-
-
33748792525
-
Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland
-
Kandeler E., Deiglmayr K., Tscherko D., Bru D., Philippot L. Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland. Appl. Environ. Microbiol. 2006, 72:5957-5962.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5957-5962
-
-
Kandeler, E.1
Deiglmayr, K.2
Tscherko, D.3
Bru, D.4
Philippot, L.5
-
25
-
-
0032718452
-
Comparison of different methods for the isolation and purification of total community DNA from soil
-
Krsek M., Wellington E.M.H. Comparison of different methods for the isolation and purification of total community DNA from soil. J. Microbiol. Methods. 1999, 39:1-16.
-
(1999)
J. Microbiol. Methods.
, vol.39
, pp. 1-16
-
-
Krsek, M.1
Wellington, E.M.H.2
-
26
-
-
79951809711
-
-
Comparison of methods for the extraction of DNA from stream epilithic biofilms. Antonie Leeuwenhoek
-
Lear, G., Dong, Y., Lewis, G., 2010. Comparison of methods for the extraction of DNA from stream epilithic biofilms. Antonie Leeuwenhoek, 1-5.
-
(2010)
, pp. 3173-3178
-
-
Lear, G.1
Dong, Y.2
Lewis, G.3
-
27
-
-
79951810393
-
-
Bootstrap and Monte Carlo Methodology in Biology, Texts in Statistical Science
-
Manly B.F.J. Randomization 1997, Bootstrap and Monte Carlo Methodology in Biology, Texts in Statistical Science. vol, 70.
-
(1997)
Randomization
, vol.70
-
-
Manly, B.F.J.1
-
28
-
-
0035133496
-
Fitting multivariate models to community data: a comment on distance-based redundancy analysis
-
McArdle B.H., Anderson M.J. Fitting multivariate models to community data: a comment on distance-based redundancy analysis. Ecology 2001, 82:290-297.
-
(2001)
Ecology
, vol.82
, pp. 290-297
-
-
McArdle, B.H.1
Anderson, M.J.2
-
29
-
-
72649093145
-
Extracting nucleic acids from activated sludge which reflect community population diversity
-
McIlroy S., Porter K., Seviour R., Tillett D. Extracting nucleic acids from activated sludge which reflect community population diversity. Antonie Leeuwenhoek 2009, 96:593-605.
-
(2009)
Antonie Leeuwenhoek
, vol.96
, pp. 593-605
-
-
McIlroy, S.1
Porter, K.2
Seviour, R.3
Tillett, D.4
-
30
-
-
0035129246
-
Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments
-
Miller D.N. Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments. J. Microbiol. Methods. 2001, 44:49-58.
-
(2001)
J. Microbiol. Methods.
, vol.44
, pp. 49-58
-
-
Miller, D.N.1
-
31
-
-
0032703237
-
Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples
-
Miller D.N., Bryant J.E., Madsen E.L., Ghiorse W.C. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl. Environ. Microbiol. 1999, 65:4715-4724.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4715-4724
-
-
Miller, D.N.1
Bryant, J.E.2
Madsen, E.L.3
Ghiorse, W.C.4
-
32
-
-
0029796310
-
Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
-
Nübel U., Engelen B., Felske A., Snaidr J., Wieshuber A., Amann R.I., Ludwig W., Backhaus H. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 1996, 178:5636-5643.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5636-5643
-
-
Nübel, U.1
Engelen, B.2
Felske, A.3
Snaidr, J.4
Wieshuber, A.5
Amann, R.I.6
Ludwig, W.7
Backhaus, H.8
-
33
-
-
0028851170
-
Isolation and characterization of RNA from low-biomass deep-subsurface sediments
-
Ogram A., Sun W., Brockman F.J., Fredrickson J.K. Isolation and characterization of RNA from low-biomass deep-subsurface sediments. Appl. Environ. Microbiol. 1995, 61:763-768.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 763-768
-
-
Ogram, A.1
Sun, W.2
Brockman, F.J.3
Fredrickson, J.K.4
-
34
-
-
0034937878
-
A microwave-based method for nucleic acid isolation from environmental samples
-
Orsini M., Romano-Spica V. A microwave-based method for nucleic acid isolation from environmental samples. Lett. Appl. Microbiol. 2001, 33:17-20.
-
(2001)
Lett. Appl. Microbiol.
, vol.33
, pp. 17-20
-
-
Orsini, M.1
Romano-Spica, V.2
-
35
-
-
43149126327
-
Analysis of denitrifying communities in streams from an urban and non-urban catchment
-
Perryman S., Rees G., Walsh C. Analysis of denitrifying communities in streams from an urban and non-urban catchment. Aquat. Ecol. 2008, 42:95-101.
-
(2008)
Aquat. Ecol.
, vol.42
, pp. 95-101
-
-
Perryman, S.1
Rees, G.2
Walsh, C.3
-
36
-
-
35148888713
-
-
Ecology of denitrifying prokaryotes in agricultural soil, Academic Press
-
Philippot, L., Hallin, S., Schloter, M., Sparks, D.L., 2007. Ecology of denitrifying prokaryotes in agricultural soil, Vol. 96, Academic Press, pp. 249-305.
-
(2007)
, vol.96
, pp. 249-305
-
-
Philippot, L.1
Hallin, S.2
Schloter, M.3
Sparks, D.L.4
-
37
-
-
53149111487
-
Strategies for accessing soil metagenome for desired applications
-
Rajendhran J., Gunasekaran P. Strategies for accessing soil metagenome for desired applications. Biotechnol. Adv. 2008, 26:576-590.
-
(2008)
Biotechnol. Adv.
, vol.26
, pp. 576-590
-
-
Rajendhran, J.1
Gunasekaran, P.2
-
38
-
-
0034882012
-
Extraction and purification of microbial DNA from soil and sediment samples
-
Roose-Amsaleg C.L., Garnier-Sillam E., Harry M. Extraction and purification of microbial DNA from soil and sediment samples. Appl. Soil Ecol. 2001, 18:47-60.
-
(2001)
Appl. Soil Ecol.
, vol.18
, pp. 47-60
-
-
Roose-Amsaleg, C.L.1
Garnier-Sillam, E.2
Harry, M.3
-
39
-
-
43049150072
-
Innovative methods for soil DNA purification tested in soils with widely differing characteristics
-
Sagova-Mareckova M., Cermak L., Novotna J., Plhackova K., Forstova J., Kopecky J. Innovative methods for soil DNA purification tested in soils with widely differing characteristics. Appl. Environ. Microbiol. 2008, 74:2902-2907.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 2902-2907
-
-
Sagova-Mareckova, M.1
Cermak, L.2
Novotna, J.3
Plhackova, K.4
Forstova, J.5
Kopecky, J.6
-
40
-
-
0037224331
-
Direct extraction of DNA from soils for studies in microbial ecology
-
Schneegurt M.A., Dore S.Y., Kulpa C.F. Direct extraction of DNA from soils for studies in microbial ecology. Curr. Issues Mol. Biol. 2003, 5:1-8.
-
(2003)
Curr. Issues Mol. Biol.
, vol.5
, pp. 1-8
-
-
Schneegurt, M.A.1
Dore, S.Y.2
Kulpa, C.F.3
-
41
-
-
78149467615
-
Abundance of microbes involved in nitrogen transformation in the rhizosphere of Leucanthemopsis alpina (L.) Heywood grown in soils from different sites of the Damma Glacier Forefield
-
Töwe S., Albert A., Kleineidam K., Brankatschk R., Dümig A., Welzl G., Munch J., Zeyer J., Schloter M. Abundance of microbes involved in nitrogen transformation in the rhizosphere of Leucanthemopsis alpina (L.) Heywood grown in soils from different sites of the Damma Glacier Forefield. Microb. Ecol. 2010, 60:762-770.
-
(2010)
Microb. Ecol.
, vol.60
, pp. 762-770
-
-
Töwe, S.1
Albert, A.2
Kleineidam, K.3
Brankatschk, R.4
Dümig, A.5
Welzl, G.6
Munch, J.7
Zeyer, J.8
Schloter, M.9
-
42
-
-
70349137950
-
An improved method to extract RNA from soil with efficient removal of humic acids
-
Wang Y., Morimoto S., Ogawa N., Oomori T., Fujii T. An improved method to extract RNA from soil with efficient removal of humic acids. J. Appl. Microbiol. 2009, 107:1168-1177.
-
(2009)
J. Appl. Microbiol.
, vol.107
, pp. 1168-1177
-
-
Wang, Y.1
Morimoto, S.2
Ogawa, N.3
Oomori, T.4
Fujii, T.5
-
43
-
-
0032869809
-
Killing two birds with one stone: simultaneous extraction of DNA and RNA from activated sludge biomass
-
Yu Z., Mohn w. Killing two birds with one stone: simultaneous extraction of DNA and RNA from activated sludge biomass. Can. J. Microbiol. 1999, 45:269-272.
-
(1999)
Can. J. Microbiol.
, vol.45
, pp. 269-272
-
-
Yu, Z.1
Mohn, W.2
|