Expression pattern of vascular endothelial growth factor 2 during sea urchin development

Gene Expression Patterns

Volumn 13, Issue 8, 2013, Pages 402-406

  Kipryushina, Yulia O ^a,b   Yakovlev, Konstantin V ^a   Kulakova, Milana A ^c   Odintsova, Nelly A ^a,b  

^a INSTITUTE OF MARINE BIOLOGY   (Russian Federation)

^b FAR EASTERN FEDERAL UNIVERSITY   (Russian Federation)

^c ST PETERSBURG STATE UNIVERSITY   (Russian Federation)

Author keywords

Development; Sea urchin; Si Vegf2; VEGF

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; PLATELET DERIVED GROWTH FACTOR; VASCULOTROPIN C;

ARTICLE; DEVELOPMENT; GENE EXPRESSION PROFILING; IN SITU HYBRIDIZATION; MESENCHYME CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEA URCHIN; STRONGYLOCENTROTUS PURPURATUS;

DEVELOPMENT; SEA URCHIN; SI-VEGF2; VEGF;

AMINO ACID SEQUENCE; ANIMALS; GENE EXPRESSION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MOLECULAR SEQUENCE DATA; ORGAN SPECIFICITY; PHYLOGENY; STRONGYLOCENTROTUS; VASCULAR ENDOTHELIAL GROWTH FACTORS;

EID: 84882790378     PISSN: 1567133X     EISSN: 18727298     Source Type: Journal    
DOI: 10.1016/j.gep.2013.07.003     Document Type: Article

References (33)

1. R.D. Barber, D.W. Harmer, R.A. Coleman, and B.J. Clark GAPDH as a housekeeping gene: analysis of GAPDH mRNA expression in a panel of 72 human tissues Physiol. Genomics 21 2005 389 395 (Pubitemid 40898499)
2. R.A. Cameron, M. Samanta, A. Yuan, D. He, and E. Davidson SpBase: the sea urchin genome database and web site Nucleic Acids Res. 37 2009 750 754
3. P. Carmeliet, and R.K. Jain Angiogenesis in cancer and other diseases Nature 407 2000 249 257
4. N. Cho, L. Keyes, E. Johnson, J. Heller, L. Ryner, F. Karim, and M. Krasnow Developmental control of blood cell migration by the Drosophila VEGF pathway Cell 108 2002 865 876 (Pubitemid 34327536)
5. A. Dereeper, V. Guignon, G. Blanc, S. Audic, S. Buffet, F. Chevenet, J.F. Dufayard, S. Guindon, V. Lefort, M. Lescot, J.M. Claverie, and O. Gascuel Phylogeny.fr: robust phylogenetic analysis for the non-specialist Nucleic Acids Res. 36 2008 W465 W469
6. C.B. Do, M.S.P. Mahabhashyam, M. Brudno, and S. Batzoglou ProbCons: probabilistic consistency-based multiple sequence alignment Genome Res. 15 2005 330 340 (Pubitemid 40309398)
7. P. Duchek, K. Somogyi, G. Jekely, S. Beccari, and P. Rørth Guidance of cell migration by the Drosophila PDGF/VEGF receptor Cell 107 2001 17 26 (Pubitemid 32972034)
8. L. Duloquin, G. Lhomond, and C. Gache Localized VEGF signaling from ectoderm to mesenchyme cells controls morphogenesis of the sea urchin embryo skeleton Development 134 2007 2293 2302 (Pubitemid 47010018)
9. S.A. Eming, and T. Krieg Molecular mechanisms of VEGF-A action during tissue repair J. Invest. Dermatol. Symp. Proc. 1 2006 79 86 (Pubitemid 44413148)
10. N. Ferrara, H.P. Gerber, and J. LeCouter The biology of VEGF and its receptors Nat. Med. 6 2003 669 676 (Pubitemid 36749215)
11. R.V. Hoch, and P. Soriano Roles of PDGF in animal development Development 130 2003 4769 4784 (Pubitemid 37321862)
12. D.I. Holmes, and I. Zachary The vascular endothelial growth factor (VEGF) family: angiogenic factors in health and disease Genome Biol. 6 2005 209
13. H. Katow, and G. Aizu Essential role of growth factor receptor-mediated signal transduction through the mitogen-activated protein kinase pathway in early embryogenesis of the echinoderm Dev. Growth Differ. 44 2002 437 455 (Pubitemid 35279003)
14. C.E. Killian, L. Croker, and F.H. Wilt SpSM30 gene family expression patterns in embryonic and adult biomineralized tissues of the sea urchin Strongylocentrotus purpuratus Gene Expression Patterns 10 2010 135 139
15. R.T. Knapp, C.H. Wu, K.C. Mobilia, and D. Joester Recombinant sea urchin vascular endothelial growth factor directs single-crystal growth and branching in vitro J. Am. Chem. Soc. 134 2012 17908 17911
16. F. Lapraz, E. Röttinger, V. Duboc, R. Range, L. Duloquin, K. Walton, S.Y. Wu, C. Bradham, M.A. Loza, T. Hibino, K. Wilson, A. Poustka, D. McClay, L. Angerer, C. Gache, and T. Lepage RTK and TGF-beta signaling pathways genes in the sea urchin genome Dev. Biol. 300 2006 132 152 (Pubitemid 44826999)
17. M.P. Lesser, K.L. Carleton, S.A. Böttger, T.M. Barry, and C.W. Walker Sea urchin tube feet are photosensory organs that express a rhabdomeric-like opsin and PAX6 Proc. R. Soc. B 278 2011 3371 3379
18. E. Li, S.C. Materna, and E.H. Davidson Direct and indirect control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo Dev. Biol. 369 2012 377 385
19. M. Matz, D. Shagin, E. Bogdanova, O. Britanova, S. Lukyanov, L. Diatchenko, and A. Chenchik Amplification of cDNA ends based on template-switching effect and step-out PCR Nucleic Acids Res. 27 1999 1558 1560 (Pubitemid 29206302)
20. Y.A. Muller, B. Li, H.W. Christinger, J.A. Wells, B.C. Cunningham, and A.M. de Vos Vascular endothelial growth factor: Crystal structure and functional mapping of the kinase domain receptor binding site Proc. Natl. Acad. Sci. USA 94 1997 7192 7197 (Pubitemid 27345291)
21. A.K. Olsson, A. Dimberg, J. Kreuger, and L. Claesson-Welsh VEGF receptor signalling - in control of vascular function Nat. Rev. Mol. Cell Biol. 5 2006 359 371
22. R.K. Ramachandran, C.A. Seid, H. Lee, and C.R. Tomlinson PDGF-BB and TGF-alpha rescue gastrulation, spiculogenesis, and LpS1 expression in collagen-disrupted embryos of the sea urchin genus Lytechinus Mech. Dev. 44 1993 33 40
23. R.K. Ramachandran, A.H. Wikramanayake, J.A. Uzman, V. Govindarajan, and C.R. Tomlinson Disruption of gastrulation and oral-aboral ectoderm differentiation in the Lytechinus pictus embryo by a dominant/negative PDGF receptor Development 124 1997 2355 2364 (Pubitemid 27309735)
24. F. Ronquist, and J.P. Huelsenbeck MrBayes 3: bayesian phylogenetic inference under mixed models Bioinformatics 9 2003 1572 1574 (Pubitemid 37038874)
25. F. Ronquist, M. Teslenko, P. van der Mark, D.L. Ayres, A. Darling, S. Höhna, B. Larget, L. Liu, M.A. Suchard, and J.P. Huelsenbeck MrBayes 3.2: efficient bayesian phylogenetic inference and model choice across a large model space Syst. Biol. 61 2012 539 542
26. K. Seipel, M. Eberhardt, P. Müller, E. Pescia, N. Yanze, and V. Schmid Homologs of vascular endothelial growth factor and receptor, VEGF and VEGFR, in the jellyfish Podocoryne carnea Dev. Dyn. 231 2004 303 312 (Pubitemid 39238056)
27. Sea Urchin Genome Sequencing Consortium, E. Sodergren, G.M. Weinstock, E.H. Davidson, R.A. Cameron, R.A. Gibbs, R.C. Angerer, L.M. Angerer, M.I. Arnone, D.R. Burgess, R.D. Burke, J.A. Coffman, M. Dean, M.R. Elphick, C.A. Ettensohn, K.R. Foltz, A. Hamdoun, R.O. Hynes, W.H. Klein, W. Marzluff, D.R. McClay, R.L. Morris, A. Mushegian, J.P. Rast, L.C. Smith, M.C. Thorndyke, V.D. Vacquier, G.M. Wessel, G. Wray, L. Zhang, C.G. Elsik, O. Ermolaeva, W. Hlavina, G. Hofmann, P. Kitts, M.J. Landrum, A.J. Mackey, D. Maglott, G. Panopoulou, A.J. Poustka, K. Pruitt, V. Sapojnikov, X. Song, A. Souvorov, V. Solovyev, Z. Wei, C.A. Whittaker, K. Worley, K.J. Durbin, Y. Shen, O. Fedrigo, D. Garfield, R. Haygood, A. Primus, R. Satija, T. Severson, M.L. Gonzalez-Garay, A.R. Jackson, A. Milosavljevic, M. Tong, C.E. Killian, B.T. Livingston, F.H. Wilt, N. Adams, R. Bellé, S. Carbonneau, R. Cheung, P. Cormier, B. Cosson, J. Croce, A. Fernandez-Guerra, A.M. Genevière, M. Goel, H. Kelkar, J. Morales, O. Mulner-Lorillon, A.J. Robertson, J.V. Goldstone, B. Cole, D. Epel, B. Gold, M.E. Hahn, M. Howard-Ashby, M. Scally, J.J. Stegeman, E.L. Allgood, J. Cool, K.M. Judkins, S.S. McCafferty, A.M. Musante, R.A. Obar, A.P. Rawson, B.J. Rossetti, I.R. Gibbons, M.P. Hoffman, A. Leone, S. Istrail, S.C. Materna, M.P. Samanta, and V. Stolc The genome of the sea urchin Strongylocentrotus purpuratus Science 314 2006 941 952
28. J. Street, M. Bao, L. deGuzman, S. Bunting, F.V. Peale Jr., N. Ferrara, H. Steinmetz, J. Hoeffel, J.L. Cleland, A. Daugherty, N. van Bruggen, H.P. Redmond, R.A. Carano, and E.H. Filvaroff Vascular endothelial growth factor stimulates bone repair by promoting angiogenesis and bone turnover Proc. Natl. Acad. Sci. USA 99 2002 9656 9661 (Pubitemid 34831103)
29. P.D. Sun, and D.R. Davies The cystine-knot growth-factor superfamily Annu. Rev. Biophys. Biomol. Struct. 24 1995 269 291
30. M. Tarsitano, S. De Falco, V. Colonna, J.D. McGhee, and M.G. Persico The C. elegans pvf-1 gene encodes a PDGF/VEGF-like factor able to bind mammalian VEGF receptors and to induce angiogenesis FASEB J. 20 2006 227 233 (Pubitemid 44933169)
31. G. Tettamanti, A. Grimaldi, R. Valvassori, L. Rinaldi, and M. Eguileor Vascular endothelial growth factor is involved in neoangiogenesis in Hirudo medicinalis (Annelida, Hirudinea) Cytokine 22 2003 168 179 (Pubitemid 36900383)
32. C. Thisse, and B. Thisse High resolution in situ hybridization on whole-mount zebrafish embryo Nat. Protoc. 3 2008 59 69
33. A.M. Waterhouse, J.B. Procter, D.M.A. Martin, M. Clamp, and G.J. Barton Jalview Version 2 - a multiple sequence alignment editor and analysis workbench Bioinformatics 25 2009 1189 1191