-
1
-
-
79751531640
-
Oral-aboral patterning and gastrulation of sea urchin embryos depend on sulfated glycosaminoglycans
-
Bergeron K.F., Xu X., Brandhorst B.P. Oral-aboral patterning and gastrulation of sea urchin embryos depend on sulfated glycosaminoglycans. Mech. Dev. 2011, 128:71-89.
-
(2011)
Mech. Dev.
, vol.128
, pp. 71-89
-
-
Bergeron, K.F.1
Xu, X.2
Brandhorst, B.P.3
-
2
-
-
0042424655
-
Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics
-
Bolouri H., Davidson E.H. Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics. Proc. Natl. Acad. Sci. USA 2003, 100:9371-9376.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9371-9376
-
-
Bolouri, H.1
Davidson, E.H.2
-
3
-
-
77951208251
-
The gene regulatory network basis of the "community effect," and analysis of a sea urchin embryo example
-
Bolouri H., Davidson E.H. The gene regulatory network basis of the "community effect," and analysis of a sea urchin embryo example. Dev. Biol. 2010, 340:170-178.
-
(2010)
Dev. Biol.
, vol.340
, pp. 170-178
-
-
Bolouri, H.1
Davidson, E.H.2
-
4
-
-
0025134039
-
Segregation of oral from aboral ectoderm precursors is completed at fifth cleavage in the embryogenesis of Strongylocentrotus purpuratus
-
Cameron R.A., Fraser S.E., Britten R.J., Davidson E.H. Segregation of oral from aboral ectoderm precursors is completed at fifth cleavage in the embryogenesis of Strongylocentrotus purpuratus. Dev. Biol. 1990, 137:77-85.
-
(1990)
Dev. Biol.
, vol.137
, pp. 77-85
-
-
Cameron, R.A.1
Fraser, S.E.2
Britten, R.J.3
Davidson, E.H.4
-
5
-
-
0026354005
-
Macromere cell fates during sea urchin development
-
Cameron R.A., Fraser S.E., Britten R.J., Davidson E.H. Macromere cell fates during sea urchin development. Development 1991, 113:1085-1091.
-
(1991)
Development
, vol.113
, pp. 1085-1091
-
-
Cameron, R.A.1
Fraser, S.E.2
Britten, R.J.3
Davidson, E.H.4
-
6
-
-
58149199570
-
SpBase: the sea urchin genome database and web site
-
Cameron R.A., Samanta M., Yuan A., He D., Davidson E. SpBase: the sea urchin genome database and web site. Nucleic Acids. Res. 2009, 37:D750-754.
-
(2009)
Nucleic Acids. Res.
, vol.37
-
-
Cameron, R.A.1
Samanta, M.2
Yuan, A.3
He, D.4
Davidson, E.5
-
7
-
-
78650376875
-
The dynamic gene expression patterns of transcription factors constituting the sea urchin aboral ectoderm gene regulatory network
-
Chen J.H., Luo Y.J., Su Y.H. The dynamic gene expression patterns of transcription factors constituting the sea urchin aboral ectoderm gene regulatory network. Dev. Dyn. 2011, 240:250-260.
-
(2011)
Dev. Dyn.
, vol.240
, pp. 250-260
-
-
Chen, J.H.1
Luo, Y.J.2
Su, Y.H.3
-
8
-
-
0035253391
-
Oral-aboral axis specification in the sea urchin embryo. I. Axis entrainment by respiratory asymmetry
-
Coffman J.A., Davidson E.H. Oral-aboral axis specification in the sea urchin embryo. I. Axis entrainment by respiratory asymmetry. Dev. Biol. 2001, 230:18-28.
-
(2001)
Dev. Biol.
, vol.230
, pp. 18-28
-
-
Coffman, J.A.1
Davidson, E.H.2
-
9
-
-
4043091372
-
Oral-aboral axis specification in the sea urchin embryo II. Mitochondrial distribution and redox state contribute to establishing polarity in Strongylocentrotus purpuratus.
-
Coffman J.A., McCarthy J.J., Dickey-Sims C., Robertson A.J. Oral-aboral axis specification in the sea urchin embryo II. Mitochondrial distribution and redox state contribute to establishing polarity in Strongylocentrotus purpuratus. Dev. Biol. 2004, 273:160-171.
-
(2004)
Dev. Biol.
, vol.273
, pp. 160-171
-
-
Coffman, J.A.1
McCarthy, J.J.2
Dickey-Sims, C.3
Robertson, A.J.4
-
10
-
-
79951677809
-
Oxygen, pH, and oral-aboral axis specification in the sea urchin embryo
-
Coluccio A.E., LaCasse T.J., Coffman J.A. Oxygen, pH, and oral-aboral axis specification in the sea urchin embryo. Mol. Reprod. Dev. 2011, 78:68.
-
(2011)
Mol. Reprod. Dev.
, vol.78
, pp. 68
-
-
Coluccio, A.E.1
LaCasse, T.J.2
Coffman, J.A.3
-
11
-
-
0035712990
-
Expression pattern of Brachyury in the embryo of the sea urchin Paracentrotus lividus
-
Croce J., Lhomond G., Gache C. Expression pattern of Brachyury in the embryo of the sea urchin Paracentrotus lividus. Dev. Genes Evol. 2001, 211:617-619.
-
(2001)
Dev. Genes Evol.
, vol.211
, pp. 617-619
-
-
Croce, J.1
Lhomond, G.2
Gache, C.3
-
12
-
-
12144288504
-
Nodal and BMP2/4 signaling organizes the oral-aboral axis of the sea urchin embryo
-
Duboc V., Rottinger E., Besnardeau L., Lepage T. Nodal and BMP2/4 signaling organizes the oral-aboral axis of the sea urchin embryo. Dev. Cell 2004, 6:397-410.
-
(2004)
Dev. Cell
, vol.6
, pp. 397-410
-
-
Duboc, V.1
Rottinger, E.2
Besnardeau, L.3
Lepage, T.4
-
13
-
-
48949115139
-
Lefty acts as an essential modulator of Nodal activity during sea urchin oral-aboral axis formation
-
Duboc V., Lapraz F., Besnardeau L., Lepage T. Lefty acts as an essential modulator of Nodal activity during sea urchin oral-aboral axis formation. Dev. Biol. 2008, 320:49-59.
-
(2008)
Dev. Biol.
, vol.320
, pp. 49-59
-
-
Duboc, V.1
Lapraz, F.2
Besnardeau, L.3
Lepage, T.4
-
14
-
-
73649110278
-
Nodal and BMP2/4 pattern the mesoderm and endoderm during development of the sea urchin embryo
-
Duboc V., Lapraz F., Saudemont A., Bessodes N., Mekpoh F., Haillot E., Quirin M., Lepage T. Nodal and BMP2/4 pattern the mesoderm and endoderm during development of the sea urchin embryo. Development 2010, 137:223-235.
-
(2010)
Development
, vol.137
, pp. 223-235
-
-
Duboc, V.1
Lapraz, F.2
Saudemont, A.3
Bessodes, N.4
Mekpoh, F.5
Haillot, E.6
Quirin, M.7
Lepage, T.8
-
15
-
-
34347326245
-
Localized VEGF signaling from ectoderm to mesenchyme cells controls morphogenesis of the sea urchin embryo skeleton
-
Duloquin L., Lhomond G., Gache C. Localized VEGF signaling from ectoderm to mesenchyme cells controls morphogenesis of the sea urchin embryo skeleton. Development 2007, 134:2293-2302.
-
(2007)
Development
, vol.134
, pp. 2293-2302
-
-
Duloquin, L.1
Lhomond, G.2
Gache, C.3
-
16
-
-
11144263726
-
Nodal/activin signaling establishes oral-aboral polarity in the early sea urchin embryo
-
Flowers V.L., Courteau G.R., Poustka A.J., Weng W., Venuti J.M. Nodal/activin signaling establishes oral-aboral polarity in the early sea urchin embryo. Dev. Dyn. 2004, 231:727-740.
-
(2004)
Dev. Dyn.
, vol.231
, pp. 727-740
-
-
Flowers, V.L.1
Courteau, G.R.2
Poustka, A.J.3
Weng, W.4
Venuti, J.M.5
-
17
-
-
72949097669
-
Patterning of the dorsal-ventral axis in echinoderms: insights into the evolution of the BMP-chordin signaling network
-
Lapraz F., Besnardeau L., Lepage T. Patterning of the dorsal-ventral axis in echinoderms: insights into the evolution of the BMP-chordin signaling network. PLoS Biol. 2009, 7:e1000248.
-
(2009)
PLoS Biol.
, vol.7
-
-
Lapraz, F.1
Besnardeau, L.2
Lepage, T.3
-
18
-
-
64549161094
-
Visualization, documentation, analysis, and communication of large-scale gene regulatory networks
-
Longabaugh W.J., Davidson E.H., Bolouri H. Visualization, documentation, analysis, and communication of large-scale gene regulatory networks. Biochim. Biophys. Acta 2009, 1789:363-374.
-
(2009)
Biochim. Biophys. Acta
, vol.1789
, pp. 363-374
-
-
Longabaugh, W.J.1
Davidson, E.H.2
Bolouri, H.3
-
19
-
-
77956628617
-
High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development
-
Materna S.C., Nam J., Davidson E.H. High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development. Gene Expression Patterns 2010, 10:177-184.
-
(2010)
Gene Expression Patterns
, vol.10
, pp. 177-184
-
-
Materna, S.C.1
Nam, J.2
Davidson, E.H.3
-
20
-
-
2942587375
-
Expression patterns of four different regulatory genes that function during sea urchin development
-
Minokawa T., Rast J.P., Arenas-Mena C., Franco C.B., Davidson E.H. Expression patterns of four different regulatory genes that function during sea urchin development. Gene Expression Patterns 2004, 4:449-456.
-
(2004)
Gene Expression Patterns
, vol.4
, pp. 449-456
-
-
Minokawa, T.1
Rast, J.P.2
Arenas-Mena, C.3
Franco, C.B.4
Davidson, E.H.5
-
21
-
-
34249876002
-
Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network
-
Nam J., Su Y.H., Lee P.Y., Robertson A.J., Coffman J.A., Davidson E.H. Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network. Dev. Biol. 2007, 306:860-869.
-
(2007)
Dev. Biol.
, vol.306
, pp. 860-869
-
-
Nam, J.1
Su, Y.H.2
Lee, P.Y.3
Robertson, A.J.4
Coffman, J.A.5
Davidson, E.H.6
-
22
-
-
33751514939
-
Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo
-
Oliveri P., Walton K.D., Davidson E.H., McClay D.R. Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo. Development 2006, 133:4173-4181.
-
(2006)
Development
, vol.133
, pp. 4173-4181
-
-
Oliveri, P.1
Walton, K.D.2
Davidson, E.H.3
McClay, D.R.4
-
23
-
-
4344633763
-
SpHnf6, a transcription factor that executes multiple functions in sea urchin embryogenesis
-
Otim O., Amore G., Minokawa T., McClay D.R., Davidson E.H. SpHnf6, a transcription factor that executes multiple functions in sea urchin embryogenesis. Dev. Biol. 2004, 273:226-243.
-
(2004)
Dev. Biol.
, vol.273
, pp. 226-243
-
-
Otim, O.1
Amore, G.2
Minokawa, T.3
McClay, D.R.4
Davidson, E.H.5
-
24
-
-
79959853681
-
A gene regulatory network controlling the embryonic specification of endoderm
-
Peter I.S., Davidson E.H. A gene regulatory network controlling the embryonic specification of endoderm. Nature 2011, 474:635-639.
-
(2011)
Nature
, vol.474
, pp. 635-639
-
-
Peter, I.S.1
Davidson, E.H.2
-
25
-
-
0033559621
-
Expression pattern of Brachyury and Not in the sea urchin: comparative implications for the origins of mesoderm in the basal deuterostomes
-
Peterson K.J., Harada Y., Cameron R.A., Davidson E.H. Expression pattern of Brachyury and Not in the sea urchin: comparative implications for the origins of mesoderm in the basal deuterostomes. Dev. Biol. 1999, 207:419-431.
-
(1999)
Dev. Biol.
, vol.207
, pp. 419-431
-
-
Peterson, K.J.1
Harada, Y.2
Cameron, R.A.3
Davidson, E.H.4
-
26
-
-
36148930606
-
Cis-regulatory analysis of nodal and maternal control of dorsal-ventral axis formation by Univin, a TGF-beta related to Vg1
-
Range R., Lapraz F., Quirin M., Marro S., Besnardeau L., Lepage T. Cis-regulatory analysis of nodal and maternal control of dorsal-ventral axis formation by Univin, a TGF-beta related to Vg1. Development 2007, 134:3649-3664.
-
(2007)
Development
, vol.134
, pp. 3649-3664
-
-
Range, R.1
Lapraz, F.2
Quirin, M.3
Marro, S.4
Besnardeau, L.5
Lepage, T.6
-
27
-
-
16644403055
-
Detection of mRNA by in situ hybridization and RT-PCR
-
Ransick A. Detection of mRNA by in situ hybridization and RT-PCR. Methods Cell Biol. 2004, 74:601-620.
-
(2004)
Methods Cell Biol.
, vol.74
, pp. 601-620
-
-
Ransick, A.1
-
28
-
-
0032008552
-
Late specification of Veg1 lineages to endodermal fate in the sea urchin embryo
-
Ransick A., Davidson E.H. Late specification of Veg1 lineages to endodermal fate in the sea urchin embryo. Dev. Biol. 1998, 195:38-48.
-
(1998)
Dev. Biol.
, vol.195
, pp. 38-48
-
-
Ransick, A.1
Davidson, E.H.2
-
29
-
-
78650699481
-
Ancestral regulatory circuits governing ectoderm patterning downstream of Nodal and BMP2/4 revealed by gene regulatory network analysis in an echinoderm
-
Saudemont A., Haillot E., Mekpoh F., Bessodes N., Quirin M., Lapraz F., Duboc V., Rottinger E., Range R., Oisel A., Besnardeau L., Wincker P., Lepage T. Ancestral regulatory circuits governing ectoderm patterning downstream of Nodal and BMP2/4 revealed by gene regulatory network analysis in an echinoderm. PLoS Genet. 2010, 6:e1001259.
-
(2010)
PLoS Genet.
, vol.6
-
-
Saudemont, A.1
Haillot, E.2
Mekpoh, F.3
Bessodes, N.4
Quirin, M.5
Lapraz, F.6
Duboc, V.7
Rottinger, E.8
Range, R.9
Oisel, A.10
Besnardeau, L.11
Wincker, P.12
Lepage, T.13
-
30
-
-
67349171520
-
A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo
-
Su Y.H., Li E., Geiss G.K., Longabaugh W.J., Kramer A., Davidson E.H. A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo. Dev. Biol. 2009, 329:410-421.
-
(2009)
Dev. Biol.
, vol.329
, pp. 410-421
-
-
Su, Y.H.1
Li, E.2
Geiss, G.K.3
Longabaugh, W.J.4
Kramer, A.5
Davidson, E.H.6
-
31
-
-
33751507966
-
Sea urchin Forkhead gene family: phylogeny and embryonic expression
-
Tu Q., Brown C.T., Davidson E.H., Oliveri P. Sea urchin Forkhead gene family: phylogeny and embryonic expression. Dev. Biol. 2006, 300:49-62.
-
(2006)
Dev. Biol.
, vol.300
, pp. 49-62
-
-
Tu, Q.1
Brown, C.T.2
Davidson, E.H.3
Oliveri, P.4
-
32
-
-
33846798194
-
Sp-Smad2/3 mediates patterning of neurogenic ectoderm by nodal in the sea urchin embryo
-
Yaguchi S., Yaguchi J., Burke R.D. Sp-Smad2/3 mediates patterning of neurogenic ectoderm by nodal in the sea urchin embryo. Dev. Biol. 2007, 302:494-503.
-
(2007)
Dev. Biol.
, vol.302
, pp. 494-503
-
-
Yaguchi, S.1
Yaguchi, J.2
Burke, R.D.3
|