메뉴 건너뛰기




Volumn 104, Issue 3, 2013, Pages 349-368

Molecular signatures for the phylum Aquificae and its different clades: Proposal for division of the phylum Aquificae into the emended order Aquificales, containing the families Aquificaceae and Hydrogenothermaceae, and a new order Desulfurobacteriales ord. nov., containing the family Desulfurobacteriaceae

Author keywords

Aquificae taxonomy; Aquificales; Conserved signature indels; Hyperthermophiles; Molecular signatures; Order Desulfurobacteriales

Indexed keywords

HYDROGEN; RNA 16S; SULFUR DERIVATIVE;

EID: 84882266009     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-013-9957-6     Document Type: Article
Times cited : (29)

References (61)
  • 2
    • 77952021090 scopus 로고    scopus 로고
    • Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6
    • 20348262 10.1128/JB.00158-10 1:CAS:528:DC%2BC3cXms1emsrg%3D
    • Arai H, Kanbe H, Ishii M, Igarashi Y (2010) Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6. J Bacteriol 192:2651-2652
    • (2010) J Bacteriol , vol.192 , pp. 2651-2652
    • Arai, H.1    Kanbe, H.2    Ishii, M.3    Igarashi, Y.4
  • 3
    • 84874811700 scopus 로고    scopus 로고
    • Molecular signatures for the phylum Synergistetes and some of its subclades
    • 22711299 10.1007/s10482-012-9759-2 1:CAS:528:DC%2BC38XhsFCqs7nJ
    • Bhandari V, Gupta RS (2012) Molecular signatures for the phylum Synergistetes and some of its subclades. Antonie van Leeuwenhoek 102(4):517-540
    • (2012) Antonie Van Leeuwenhoek , vol.102 , Issue.4 , pp. 517-540
    • Bhandari, V.1    Gupta, R.S.2
  • 4
    • 84879951966 scopus 로고    scopus 로고
    • Protein based molecular markers provide reliable means to understand prokaryotic phylogeny and support Darwinian mode of evolution
    • 22919687 10.3389/fcimb.2012.00098
    • Bhandari V, Naushad HS, Gupta RS (2012) Protein based molecular markers provide reliable means to understand prokaryotic phylogeny and support Darwinian mode of evolution. Front Cell Infect Microbiol 2:98
    • (2012) Front Cell Infect Microbiol , vol.2 , pp. 98
    • Bhandari, V.1    Naushad, H.S.2    Gupta, R.S.3
  • 5
    • 84878846623 scopus 로고    scopus 로고
    • Molecular signatures for the Bacillus species: Demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus
    • doi: 10.1099/ijs.0.048488-0
    • Bhandari V, Ahmod NZ, Shah HN, Gupta RS (2013) Molecular signatures for the Bacillus species: demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus. Int J Syst Evol Microbiol. doi: 10.1099/ijs.0.048488-0
    • (2013) Int J Syst Evol Microbiol
    • Bhandari, V.1    Ahmod, N.Z.2    Shah, H.N.3    Gupta, R.S.4
  • 7
    • 56349169406 scopus 로고    scopus 로고
    • Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of Aquificales in the phylogeny of Bacteria
    • 18834516 10.1186/1471-2148-8-272
    • Boussau B, Gueguen L, Gouy M (2008) Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of Aquificales in the phylogeny of Bacteria. BMC Evol Biol 8:272
    • (2008) BMC Evol Biol , vol.8 , pp. 272
    • Boussau, B.1    Gueguen, L.2    Gouy, M.3
  • 9
    • 76549120765 scopus 로고    scopus 로고
    • Thermocrinis minervae sp. nov., a hydrogen- and sulfur-oxidizing, thermophilic member of the Aquificales from a Costa Rican terrestrial hot spring
    • 19651724 10.1099/ijs.0.010496-0 1:CAS:528:DC%2BC3cXktlymtLw%3D
    • Caldwell SL, Liu Y, Ferrera I, Beveridge T, Reysenbach AL (2010) Thermocrinis minervae sp. nov., a hydrogen- and sulfur-oxidizing, thermophilic member of the Aquificales from a Costa Rican terrestrial hot spring. Int J Syst Evol Microbiol 60:338-343
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 338-343
    • Caldwell, S.L.1    Liu, Y.2    Ferrera, I.3    Beveridge, T.4    Reysenbach, A.L.5
  • 10
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • 10742046 10.1093/oxfordjournals.molbev.a026334 1:CAS:528: DC%2BD3cXisVSgt7g%3D
    • Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 11
    • 33644700003 scopus 로고    scopus 로고
    • Toward automatic reconstruction of a highly resolved tree of life
    • 16513982 10.1126/science.1123061 1:CAS:528:DC%2BD28XhvVeku7s%3D
    • Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P (2006) Toward automatic reconstruction of a highly resolved tree of life. Science 311:1283-1287
    • (2006) Science , vol.311 , pp. 1283-1287
    • Ciccarelli, F.D.1    Doerks, T.2    Von Mering, C.3    Creevey, C.J.4    Snel, B.5    Bork, P.6
  • 14
    • 0036691501 scopus 로고    scopus 로고
    • New isolates and physiological properties of the Aquificales and description of Thermocrinis albus sp. nov
    • 12215816 10.1007/s00792-001-0259-y
    • Eder W, Huber R (2002) New isolates and physiological properties of the Aquificales and description of Thermocrinis albus sp. nov. Extremophiles 6:309-318
    • (2002) Extremophiles , vol.6 , pp. 309-318
    • Eder, W.1    Huber, R.2
  • 15
    • 0037217228 scopus 로고    scopus 로고
    • Hydrogenothermaceae fam. nov. in validation list no. 89
    • 10.1099/ijs.0.02651-0
    • Eder W, Huber R (2003) Hydrogenothermaceae fam. nov. in validation list no. 89. Int J Syst Evol Microbiol 53:1-2
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1-2
    • Eder, W.1    Huber, R.2
  • 18
    • 27844604206 scopus 로고    scopus 로고
    • Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria
    • 16280504 10.1099/ijs.0.63785-0 1:CAS:528:DC%2BD2MXhtlWhtLrE
    • Gao B, Gupta RS (2005) Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria. Int J Syst Evol Microbiol 55:2401-2412
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2401-2412
    • Gao, B.1    Gupta, R.S.2
  • 19
    • 84856228043 scopus 로고    scopus 로고
    • Microbial systematics in the post-genomics era
    • 22048742 10.1007/s10482-011-9663-1
    • Gao B, Gupta RS (2012a) Microbial systematics in the post-genomics era. Antonie van Leeuwenhoek 101:45-54
    • (2012) Antonie Van Leeuwenhoek , vol.101 , pp. 45-54
    • Gao, B.1    Gupta, R.S.2
  • 20
    • 84860523799 scopus 로고    scopus 로고
    • Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria
    • 22390973 10.1128/MMBR.05011-11 1:CAS:528:DC%2BC38XlslKisb0%3D
    • Gao B, Gupta RS (2012b) Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria. Microbiol Mol Biol Rev 76:66-112
    • (2012) Microbiol Mol Biol Rev , vol.76 , pp. 66-112
    • Gao, B.1    Gupta, R.S.2
  • 21
    • 63449137540 scopus 로고    scopus 로고
    • Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria
    • 19196760 10.1099/ijs.0.002741-0 1:CAS:528:DC%2BD1MXjslals7w%3D
    • Gao B, Mohan R, Gupta RS (2009) Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria. Int J Syst Evol Microbiol 59:234-247
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 234-247
    • Gao, B.1    Mohan, R.2    Gupta, R.S.3
  • 23
    • 2542452389 scopus 로고    scopus 로고
    • Signature sequences in diverse proteins provide evidence for the late divergence of the order Aquificales
    • 15179606 1:CAS:528:DC%2BD2cXns1Gqsrg%3D
    • Griffiths E, Gupta RS (2004) Signature sequences in diverse proteins provide evidence for the late divergence of the order Aquificales. Int Microbiol 7:41-52
    • (2004) Int Microbiol , vol.7 , pp. 41-52
    • Griffiths, E.1    Gupta, R.S.2
  • 24
    • 31144455457 scopus 로고    scopus 로고
    • Molecular signatures in protein sequences that are characteristics of the phylum Aquificae
    • 16403873 10.1099/ijs.0.63927-0 1:CAS:528:DC%2BD28XhsVeksLY%3D
    • Griffiths E, Gupta RS (2006) Molecular signatures in protein sequences that are characteristics of the phylum Aquificae. Int J Syst Evol Microbiol 56:99-107
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 99-107
    • Griffiths, E.1    Gupta, R.S.2
  • 25
    • 84867147580 scopus 로고    scopus 로고
    • The hyperthermophilic bacterium Aquifex aeolicus: From respiratory pathways to extremely resistant enzymes and biotechnological applications
    • 23046953 10.1016/B978-0-12-394423-8.00004-4 1:CAS:528: DC%2BC3sXotFeitro%3D
    • Guiral M, Prunetti L, Aussignargues C, Ciaccafava A, Infossi P, Ilbert M, Lojou E, Giudici-Orticoni MT (2012) The hyperthermophilic bacterium Aquifex aeolicus: from respiratory pathways to extremely resistant enzymes and biotechnological applications. Adv Microb Physiol 61:125-194
    • (2012) Adv Microb Physiol , vol.61 , pp. 125-194
    • Guiral, M.1    Prunetti, L.2    Aussignargues, C.3    Ciaccafava, A.4    Infossi, P.5    Ilbert, M.6    Lojou, E.7    Giudici-Orticoni, M.T.8
  • 26
    • 0031794743 scopus 로고    scopus 로고
    • Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes
    • 9841678 1:CAS:528:DyaK1MXhs1OntQ%3D%3D
    • Gupta RS (1998) Protein phylogenies and signature sequences: a reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes. Microbiol Mol Biol Rev 62:1435-1491
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 1435-1491
    • Gupta, R.S.1
  • 27
    • 0035756272 scopus 로고    scopus 로고
    • The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins
    • 12051562 10.1007/s10123-001-0037-9 1:CAS:528:DC%2BD38XmtF2iu70%3D
    • Gupta RS (2001) The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins. Int Microbiol 4:187-202
    • (2001) Int Microbiol , vol.4 , pp. 187-202
    • Gupta, R.S.1
  • 28
    • 84860513924 scopus 로고    scopus 로고
    • Applications of conserved indels for understanding microbial phylogeny
    • A. Oren R.T. Papke (eds) Caister Academic Press Norfolk
    • Gupta RS (2010) Applications of conserved indels for understanding microbial phylogeny. In: Oren A, Papke RT (eds) Molecular phylogeny of microorganisms. Caister Academic Press, Norfolk, pp 135-150
    • (2010) Molecular Phylogeny of Microorganisms , pp. 135-150
    • Gupta, R.S.1
  • 29
    • 84882288220 scopus 로고    scopus 로고
    • Phylum aquificae
    • E. Rosenberg E.F. DeLong F. Thompson S. Lory E. Stackebrand (eds) 4 Springer Berlin
    • Gupta RS (2013) Phylum Aquificae. In: Rosenberg E, DeLong EF, Thompson F, Lory S, Stackebrand E (eds) The prokaryotes, 4th edn. Springer, Berlin (in press)
    • (2013) The Prokaryotes
    • Gupta, R.S.1
  • 30
    • 84871819099 scopus 로고    scopus 로고
    • Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; Proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov
    • 22903492 10.1007/s10482-012-9790-3
    • Gupta RS, Chander P, George S (2013a) Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov. Antonie van Leeuwenhoek 103:99-119
    • (2013) Antonie Van Leeuwenhoek , vol.103 , pp. 99-119
    • Gupta, R.S.1    Chander, P.2    George, S.3
  • 31
    • 84878858016 scopus 로고    scopus 로고
    • Molecular signatures for the class Coriobacteriia and its different clades; Proposal for division of the class Coriobacteriia into the emended order Coriobacteriales, containing the emended family Coriobacteriaceae and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. Nov
    • doi: 10.1099/ijs.0.048371-0
    • Gupta RS, Chen WJ, Adeolu M, and Chai Y (2013b) Molecular signatures for the class Coriobacteriia and its different clades; Proposal for division of the class Coriobacteriia into the emended order Coriobacteriales, containing the emended family Coriobacteriaceae and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. nov. Int J Syst Evol Microbiol. doi: 10.1099/ijs.0.048371-0
    • (2013) Int J Syst Evol Microbiol
    • Gupta, R.S.1    Chen, W.J.2    Adeolu, M.3    Chai, Y.4
  • 32
    • 39749157815 scopus 로고    scopus 로고
    • Aquificales
    • 10.1007/0-387-30747-8-39
    • Huber R, Eder W (2006) Aquificales. Prokaryotes 7:925-938
    • (2006) Prokaryotes , vol.7 , pp. 925-938
    • Huber, R.1    Eder, W.2
  • 34
    • 33846109956 scopus 로고    scopus 로고
    • 2 fixation via the reductive tricarboxylic acid cycle in different lineages within the phylum Aquificae: Evidence for two ways of citrate cleavage
    • 17227414 10.1111/j.1462-2920.2006.01118.x 1:CAS:528:DC%2BD2sXis1SltLg%3D
    • 2 fixation via the reductive tricarboxylic acid cycle in different lineages within the phylum Aquificae: evidence for two ways of citrate cleavage. Environ Microbiol 9:81-92
    • (2007) Environ Microbiol , vol.9 , pp. 81-92
    • Hugler, M.1    Huber, H.2    Molyneaux, S.J.3    Vetriani, C.4    Sievert, S.M.5
  • 35
    • 0035512204 scopus 로고    scopus 로고
    • Signature lipids and stable carbon isotope analyses of Octopus Spring hyperthermophilic communities compared with those of Aquificales representatives
    • 11679343 10.1128/AEM.67.11.5179-5189.2001 1:CAS:528:DC%2BD3MXotlSns78%3D
    • Jahnke LL, Eder W, Huber R, Hope JM, Hinrichs KU, Hayes JM, Des Marais DJ, Cady SL, Summons RE (2001) Signature lipids and stable carbon isotope analyses of Octopus Spring hyperthermophilic communities compared with those of Aquificales representatives. Appl Environ Microbiol 67:5179-5189
    • (2001) Appl Environ Microbiol , vol.67 , pp. 5179-5189
    • Jahnke, L.L.1    Eder, W.2    Huber, R.3    Hope, J.M.4    Hinrichs, K.U.5    Hayes, J.M.6    Des Marais, D.J.7    Cady, S.L.8    Summons, R.E.9
  • 37
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • 1633570 1:CAS:528:DyaK38Xlt1Okt7w%3D
    • Jones DT, Taylor WR, Thornton JM (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8:275-282
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 38
    • 0032955637 scopus 로고    scopus 로고
    • RNA polymerase of Aquifex pyrophilus: Implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria
    • 10198119 10.1007/PL00006496 1:CAS:528:DyaK1MXisFGis78%3D
    • Klenk HP, Meier TD, Durovic P, Schwass V, Lottspeich F, Dennis PP, Zillig W (1999) RNA polymerase of Aquifex pyrophilus: implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria. J Mol Evol 48:528-541
    • (1999) J Mol Evol , vol.48 , pp. 528-541
    • Klenk, H.P.1    Meier, T.D.2    Durovic, P.3    Schwass, V.4    Lottspeich, F.5    Dennis, P.P.6    Zillig, W.7
  • 39
    • 37649010337 scopus 로고    scopus 로고
    • Phylogenetic systematics of microorganisms inhabiting thermal environments
    • 10.1134/S0006297907120048 1:CAS:528:DC%2BD1cXpvVM%3D
    • Lebedinsky AV, Chernyh NA, Bonch-Osmolovskaya EA (2007) Phylogenetic systematics of microorganisms inhabiting thermal environments. Biochemistry (Mosc) 72:1299-1312
    • (2007) Biochemistry (Mosc) , vol.72 , pp. 1299-1312
    • Lebedinsky, A.V.1    Chernyh, N.A.2    Bonch-Osmolovskaya, E.A.3
  • 40
    • 33845721741 scopus 로고    scopus 로고
    • Desulfurobacterium atlanticum sp. nov., Desulfurobacterium pacificum sp. nov. and Thermovibrio guaymasensis sp. nov., three thermophilic members of the Desulfurobacteriaceae fam. nov., a deep branching lineage within the Bacteria
    • 17158986 10.1099/ijs.0.63994-0
    • L'Haridon S, Reysenbach AL, Tindall BJ, Schonheit P, Banta A, Johnsen U, Schumann P, Gambacorta A, Stackebrandt E, Jeanthon C (2006) Desulfurobacterium atlanticum sp. nov., Desulfurobacterium pacificum sp. nov. and Thermovibrio guaymasensis sp. nov., three thermophilic members of the Desulfurobacteriaceae fam. nov., a deep branching lineage within the Bacteria. Int J Syst Evol Microbiol 56:2843-2852
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 2843-2852
    • L'Haridon, S.1    Reysenbach, A.L.2    Tindall, B.J.3    Schonheit, P.4    Banta, A.5    Johnsen, U.6    Schumann, P.7    Gambacorta, A.8    Stackebrandt, E.9    Jeanthon, C.10
  • 41
    • 23944479706 scopus 로고    scopus 로고
    • Stabilization against hyperthermal denaturation through increased CG content can explain the discrepancy between whole genome and 16S rRNA analyses
    • 16114882 10.1021/bi0502792 1:CAS:528:DC%2BD2MXntVersLY%3D
    • Meyer TE, Bansal AK (2005) Stabilization against hyperthermal denaturation through increased CG content can explain the discrepancy between whole genome and 16S rRNA analyses. Biochemistry 44:11458-11465
    • (2005) Biochemistry , vol.44 , pp. 11458-11465
    • Meyer, T.E.1    Bansal, A.K.2
  • 42
    • 0038243193 scopus 로고    scopus 로고
    • Persephonella hydrogeniphila sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium from a deep-sea hydrothermal vent chimney
    • 12807214 10.1099/ijs.0.02505-0 1:CAS:528:DC%2BD3sXkvFOis7o%3D
    • Nakagawa S, Takai K, Horikoshi K, Sako Y (2003) Persephonella hydrogeniphila sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium from a deep-sea hydrothermal vent chimney. Int J Syst Evol Microbiol 53:863-869
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 863-869
    • Nakagawa, S.1    Takai, K.2    Horikoshi, K.3    Sako, Y.4
  • 43
    • 27844502481 scopus 로고    scopus 로고
    • Sulfurihydrogenibium yellowstonense sp. nov., an extremely thermophilic, facultatively heterotrophic, sulfur-oxidizing bacterium from Yellowstone National Park, and emended descriptions of the genus Sulfurihydrogenibium, Sulfurihydrogenibium subterraneum and Sulfurihydrogenibium azorense
    • 16280480 10.1099/ijs.0.63708-0 1:CAS:528:DC%2BD2MXhtlWhtLzI
    • Nakagawa S, Shtaih Z, Banta A, Beveridge TJ, Sako Y, Reysenbach AL (2005) Sulfurihydrogenibium yellowstonense sp. nov., an extremely thermophilic, facultatively heterotrophic, sulfur-oxidizing bacterium from Yellowstone National Park, and emended descriptions of the genus Sulfurihydrogenibium, Sulfurihydrogenibium subterraneum and Sulfurihydrogenibium azorense. Int J Syst Evol Microbiol 55:2263-2268
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2263-2268
    • Nakagawa, S.1    Shtaih, Z.2    Banta, A.3    Beveridge, T.J.4    Sako, Y.5    Reysenbach, A.L.6
  • 44
    • 44449103875 scopus 로고    scopus 로고
    • Hydrogenivirga okinawensis sp. nov., a thermophilic sulfur-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal field, Southern Okinawa Trough
    • 18319477 10.1099/ijs.0.64615-0 1:CAS:528:DC%2BD1cXkslaktbg%3D
    • Nunoura T, Miyazaki M, Suzuki Y, Takai K, Horikoshi K (2008a) Hydrogenivirga okinawensis sp. nov., a thermophilic sulfur-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal field, Southern Okinawa Trough. Int J Syst Evol Microbiol 58:676-681
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 676-681
    • Nunoura, T.1    Miyazaki, M.2    Suzuki, Y.3    Takai, K.4    Horikoshi, K.5
  • 45
    • 44449144646 scopus 로고    scopus 로고
    • Thermosulfidibacter takaii gen. nov., sp. nov., a thermophilic, hydrogen-oxidizing, sulfur-reducing chemolithoautotroph isolated from a deep-sea hydrothermal field in the Southern Okinawa Trough
    • 18319474 10.1099/ijs.0.65349-0 1:CAS:528:DC%2BD1cXkslaktb0%3D
    • Nunoura T, Oida H, Miyazaki M, Suzuki Y (2008b) Thermosulfidibacter takaii gen. nov., sp. nov., a thermophilic, hydrogen-oxidizing, sulfur-reducing chemolithoautotroph isolated from a deep-sea hydrothermal field in the Southern Okinawa Trough. Int J Syst Evol Microbiol 58:659-665
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 659-665
    • Nunoura, T.1    Oida, H.2    Miyazaki, M.3    Suzuki, Y.4
  • 46
    • 84873095226 scopus 로고    scopus 로고
    • Phylogenetic position of Aquificales based on the whole genome sequences of six Aquificales species
    • 22844640
    • Oshima K, Chiba Y, Igarashi Y, Arai H, Ishii M (2012) Phylogenetic position of Aquificales based on the whole genome sequences of six Aquificales species. Int J Evol Biol 2012:859264
    • (2012) Int J Evol Biol , vol.2012 , pp. 859264
    • Oshima, K.1    Chiba, Y.2    Igarashi, Y.3    Arai, H.4    Ishii, M.5
  • 47
    • 84867183675 scopus 로고    scopus 로고
    • Phorcysia thermohydrogeniphila gen. nov., sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium from a deep-sea hydrothermal vent
    • 22140151 10.1099/ijs.0.035642-0 1:CAS:528:DC%2BC3sXosVGitQ%3D%3D
    • Perez-Rodriguez I, Grosche A, Massenburg L, Starovoytov V, Lutz RA, Vetriani C (2012) Phorcysia thermohydrogeniphila gen. nov., sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 62:2388-2394
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 2388-2394
    • Perez-Rodriguez, I.1    Grosche, A.2    Massenburg, L.3    Starovoytov, V.4    Lutz, R.A.5    Vetriani, C.6
  • 49
    • 0000864719 scopus 로고    scopus 로고
    • Phylum BI. Aquificae phy. nov
    • D.R. Boone R.W. Castenholz (eds) Springer New York 10.1007/978-0-387- 21609-6-18
    • Reysenbach AL (2001) Phylum BI. Aquificae phy. nov. In: Boone DR, Castenholz RW (eds) Bergey's manual of systematic bacteriology. Springer, New York, pp 359-367
    • (2001) Bergey's Manual of Systematic Bacteriology , pp. 359-367
    • Reysenbach, A.L.1
  • 50
    • 0036560850 scopus 로고    scopus 로고
    • Aquificales ord. nov. In: Validation of the publication of new names and new combinations previously effectively published outside the IJSEM. List No. 85
    • Reysenbach AL (2002) Aquificales ord. nov. In: Validation of the publication of new names and new combinations previously effectively published outside the IJSEM. List No. 85. Int J Syst Evol Microbiol 52:685-690
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 685-690
    • Reysenbach, A.L.1
  • 52
    • 0033793019 scopus 로고    scopus 로고
    • Rare genomic changes as a tool for phylogenetics
    • 11050348 10.1016/S0169-5347(00)01967-4
    • Rokas A, Holland PW (2000) Rare genomic changes as a tool for phylogenetics. Trends Ecol Evol 15:454-459
    • (2000) Trends Ecol Evol , vol.15 , pp. 454-459
    • Rokas, A.1    Holland, P.W.2
  • 53
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • 14574403 10.1038/nature02053 1:CAS:528:DC%2BD3sXotlWqsbc%3D
    • Rokas A, Williams BL, King N, Carroll SB (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425:798-804
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 54
    • 66149157930 scopus 로고    scopus 로고
    • Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth
    • 19127371 10.1007/s00438-008-0417-3 1:CAS:528:DC%2BD1MXjtlOltrw%3D
    • Singh B, Gupta RS (2009) Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth. Mol Genet Genomics 281:361-373
    • (2009) Mol Genet Genomics , vol.281 , pp. 361-373
    • Singh, B.1    Gupta, R.S.2
  • 55
    • 0037640023 scopus 로고    scopus 로고
    • Sulfurihydrogenibium subterraneum gen. nov., sp. nov., from a subsurface hot aquifer
    • 12807207 10.1099/ijs.0.02506-0 1:CAS:528:DC%2BD3sXkvFOisrk%3D
    • Takai K, Kobayashi H, Nealson KH, Horikoshi K (2003a) Sulfurihydrogenibium subterraneum gen. nov., sp. nov., from a subsurface hot aquifer. Int J Syst Evol Microbiol 53:823-827
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 823-827
    • Takai, K.1    Kobayashi, H.2    Nealson, K.H.3    Horikoshi, K.4
  • 56
    • 0344465288 scopus 로고    scopus 로고
    • Balnearium lithotrophicum gen. nov., sp. nov., a novel thermophilic, strictly anaerobic, hydrogen-oxidizing chemolithoautotroph isolated from a black smoker chimney in the Suiyo Seamount hydrothermal system
    • 14657128 10.1099/ijs.0.02773-0 1:CAS:528:DC%2BD2cXhtF2gtg%3D%3D
    • Takai K, Nakagawa S, Sako Y, Horikoshi K (2003b) Balnearium lithotrophicum gen. nov., sp. nov., a novel thermophilic, strictly anaerobic, hydrogen-oxidizing chemolithoautotroph isolated from a black smoker chimney in the Suiyo Seamount hydrothermal system. Int J Syst Evol Microbiol 53:1947-1954
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1947-1954
    • Takai, K.1    Nakagawa, S.2    Sako, Y.3    Horikoshi, K.4
  • 57
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • 21546353 10.1093/molbev/msr121 1:CAS:528:DC%2BC3MXht1eiu73K
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 58
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems in the analysis of DNA sequences
    • R.M. Miura (eds) American Mathematical Society Providence
    • Tavaré S (1986) Some probabilistic and statistical problems in the analysis of DNA sequences. In: Miura RM (ed) Lectures on mathematics in the life sciences. American Mathematical Society, Providence, pp 57-86
    • (1986) Lectures on Mathematics in the Life Sciences , pp. 57-86
    • Tavaré, S.1
  • 59
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • 11319253 10.1093/oxfordjournals.molbev.a003851 1:CAS:528: DC%2BD3MXjtFyktr4%3D
    • Whelan S, Goldman N (2001) A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 18:691-699
    • (2001) Mol Biol Evol , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 61
    • 77956884098 scopus 로고    scopus 로고
    • Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses
    • 20817437 10.1016/j.syapm.2010.08.001 1:CAS:528:DC%2BC3cXhtFOktb7K
    • Yarza P, Ludwig W, Euzeby J, Amann R, Schleifer KH, Glockner FO, Rossello-Mora R (2010) Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol 33:291-299
    • (2010) Syst Appl Microbiol , vol.33 , pp. 291-299
    • Yarza, P.1    Ludwig, W.2    Euzeby, J.3    Amann, R.4    Schleifer, K.H.5    Glockner, F.O.6    Rossello-Mora, R.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.