-
1
-
-
51649094321
-
Built-in loops allow versatility in domain-domain interactions: Lessons from self-interacting domains
-
Akiva E, Itzhaki Z, Margalit H (2008) Built-in loops allow versatility in domain-domain interactions: lessons from self-interacting domains. Proc Natl Acad Sci USA 105:13292-13297
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 13292-13297
-
-
Akiva, E.1
Itzhaki, Z.2
Margalit, H.3
-
2
-
-
0027048891
-
Synergistes jonesii, gen.nov., sp.nov.: A rumen bacterium that degrades toxic pyridinediols
-
Allison MJ, Maynerry WR, McSweeney CS, Stahl DA (1992) Synergistes jonesii, gen.nov., sp.nov.: a rumen bacterium that degrades toxic pyridinediols. Syst Appl Microbiol 15:522-529
-
(1992)
Syst Appl Microbiol
, vol.15
, pp. 522-529
-
-
Allison, M.J.1
Maynerry, W.R.2
McSweeney, C.S.3
Stahl, D.A.4
-
3
-
-
0030801002
-
Gapped BLAST and PSIBLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
27144489108
-
Protein database searches using compositionally adjusted substitution matrices
-
Altschul SF, Wootton JC, Gertz EM, Agarwala R, Morgulis A, Schaffer AA, Yu YK (2005) Protein database searches using compositionally adjusted substitution matrices. FEBS J 272:5101-5109
-
(2005)
FEBS J
, vol.272
, pp. 5101-5109
-
-
Altschul, S.F.1
Wootton, J.C.2
Gertz, E.M.3
Agarwala, R.4
Morgulis, A.5
Schaffer, A.A.6
Yu, Y.K.7
-
5
-
-
0032194380
-
Aminobacterium colombiensegen. nov. sp. nov., an amino acid-degrading anaerobe isolated from anaerobic sludge
-
Baena S, Fardeau ML, Labat M, Ollivier B, Thomas P, Garcia JL, Patel BK (1998) Aminobacterium colombiensegen. nov. sp. nov., an amino acid-degrading anaerobe isolated from anaerobic sludge. Anaerobe 4:241-250
-
(1998)
Anaerobe
, vol.4
, pp. 241-250
-
-
Baena, S.1
Fardeau, M.L.2
Labat, M.3
Ollivier, B.4
Thomas, P.5
Garcia, J.L.6
Patel, B.K.7
-
6
-
-
0032990916
-
Aminomonas paucivorans gen. nov., sp. nov., a mesophilic, anaerobic, amino-acid-utilizing bacterium
-
Baena S, Fardeau ML, Ollivier B, Labat M, Thomas P, Garcia JL, Patel BK (1999a) Aminomonas paucivorans gen. nov., sp. nov., a mesophilic, anaerobic, amino-acid-utilizing bacterium. Int J Syst Bacteriol 49(Pt 3):975-982
-
(1999)
Int J Syst Bacteriol
, vol.49
, Issue.PART 3
, pp. 975-982
-
-
Baena, S.1
Fardeau, M.L.2
Ollivier, B.3
Labat, M.4
Thomas, P.5
Garcia, J.L.6
Patel, B.K.7
-
7
-
-
0032990093
-
Phylogenetic relationships of three amino-acidutilizing anaerobes, Selenomonas acidaminovorans, 'Selenomonas acidaminophila' and Eubacterium acidaminophilum, as inferred from partial 16S rDNA nucleotide sequences and proposal of Thermanaerovibrio acidaminovorans gen. nov., comb. nov. and Anaeromusa acidaminophila gen. nov., comb. nov.
-
Baena S, Fardeau ML, Woo TH, Ollivier B, Labat M, Patel BK (1999b) Phylogenetic relationships of three amino-acidutilizing anaerobes, Selenomonas acidaminovorans, 'Selenomonas acidaminophila' and Eubacterium acidaminophilum, as inferred from partial 16S rDNA nucleotide sequences and proposal of Thermanaerovibrio acidaminovorans gen. nov., comb. nov. and Anaeromusa acidaminophila gen. nov., comb. nov. Int J Syst Bacteriol 49(Pt 3):969-974
-
(1999)
Int J Syst Bacteriol
, vol.49
, Issue.PART 3
, pp. 969-974
-
-
Baena, S.1
Fardeau, M.L.2
Woo, T.H.3
Ollivier, B.4
Labat, M.5
Patel, B.K.6
-
8
-
-
0027138675
-
Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins
-
Baldauf SL, Palmer JD (1993) Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins. Proc Natl Acad Sci USA 90:11558-11562
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 11558-11562
-
-
Baldauf, S.L.1
Palmer, J.D.2
-
9
-
-
0033948149
-
Phylogenetic depth of the bacterial genera Aquifex and Thermotoga inferred from analysis of ribosomal protein, elongation factor, and RNA polymerase subunit sequences
-
Bocchetta M, Gribaldo S, Sanangelantoni A, Cammarano P (2000) Phylogenetic depth of the bacterial genera Aquifex and Thermotoga inferred from analysis of ribosomal protein, elongation factor, and RNA polymerase subunit sequences. J Mol Evol 50:366-380
-
(2000)
J Mol Evol
, vol.50
, pp. 366-380
-
-
Bocchetta, M.1
Gribaldo, S.2
Sanangelantoni, A.3
Cammarano, P.4
-
10
-
-
80053360071
-
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1)
-
Chertkov O, Sikorski J, Brambilla E, Lapidus A, Copeland A, Glavina DR, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Spring S, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP (2010) Complete genome sequence of Aminobacterium colombiense type strain (ALA-1). Stand Genomic Sci 2:280-289
-
(2010)
Stand Genomic Sci
, vol.2
, pp. 280-289
-
-
Chertkov, O.1
Sikorski, J.2
Brambilla, E.3
Lapidus, A.4
Copeland, A.5
Glavina, D.R.6
Nolan, M.7
Lucas, S.8
Tice, H.9
Cheng, J.F.10
Han, C.11
Detter, J.C.12
Bruce, D.13
Tapia, R.14
Goodwin, L.15
Pitluck, S.16
Liolios, K.17
Ivanova, N.18
Mavromatis, K.19
Ovchinnikova, G.20
Pati, A.21
Chen, A.22
Palaniappan, K.23
Land, M.24
Hauser, L.25
Chang, Y.J.26
Jeffries, C.D.27
Spring, S.28
Rohde, M.29
Goker, M.30
Bristow, J.31
Eisen, J.A.32
Markowitz, V.33
Hugenholtz, P.34
Kyrpides, N.C.35
Klenk, H.P.36
more..
-
11
-
-
80053350363
-
Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883)
-
Chovatia M, Sikorski J, Schroder M, Lapidus A, Nolan M, Tice H, Glavina DR, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Saunders E, Detter JC, Brettin T, Rohde M, Goker M, Spring S, Bristow J, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Eisen JA (2009) Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). Stand Genomic Sci 1:254-261
-
(2009)
Stand Genomic Sci
, vol.1
, pp. 254-261
-
-
Chovatia, M.1
Sikorski, J.2
Schroder, M.3
Lapidus, A.4
Nolan, M.5
Tice, H.6
Glavina, D.R.7
Copeland, A.8
Cheng, J.F.9
Lucas, S.10
Chen, F.11
Bruce, D.12
Goodwin, L.13
Pitluck, S.14
Ivanova, N.15
Mavromatis, K.16
Ovchinnikova, G.17
Pati, A.18
Chen, A.19
Palaniappan, K.20
Land, M.21
Hauser, L.22
Chang, Y.J.23
Jeffries, C.D.24
Chain, P.25
Saunders, E.26
Detter, J.C.27
Brettin, T.28
Rohde, M.29
Goker, M.30
Spring, S.31
Bristow, J.32
Markowitz, V.33
Hugenholtz, P.34
Kyrpides, N.C.35
Klenk, H.P.36
Eisen, J.A.37
more..
-
12
-
-
33644700003
-
Toward automatic reconstruction of a highly resolved tree of life
-
Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P (2006) Toward automatic reconstruction of a highly resolved tree of life. Science 311:1283-1287
-
(2006)
Science
, vol.311
, pp. 1283-1287
-
-
Ciccarelli, F.D.1
Doerks, T.2
Von Mering, C.3
Creevey, C.J.4
Snel, B.5
Bork, P.6
-
13
-
-
33746238207
-
Thermovirga lienii gen. nov., sp. nov., a novel moderately thermophilic, anaerobic, aminoacid- degrading bacterium isolated from a North Sea oil well
-
Dahle H, Birkeland NK (2006) Thermovirga lienii gen. nov., sp. nov., a novel moderately thermophilic, anaerobic, aminoacid- degrading bacterium isolated from a North Sea oil well. Int J Syst Evol Microbiol 56:1539-1545
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 1539-1545
-
-
Dahle, H.1
Birkeland, N.K.2
-
14
-
-
33645085330
-
Novel subgingival bacterial phylotypes detected using multiple universal polymerase chain reaction primer sets
-
de Lillo A, Ashley FP, Palmer RM, Munson MA, Kyriacou L, Weightman AJ, Wade WG (2006) Novel subgingival bacterial phylotypes detected using multiple universal polymerase chain reaction primer sets. Oral Microbiol Immunol 21:61-68
-
(2006)
Oral Microbiol Immunol
, vol.21
, pp. 61-68
-
-
De Lillo, A.1
Ashley, F.P.2
Palmer, R.M.3
Munson, M.A.4
Kyriacou, L.5
Weightman, A.J.6
Wade, W.G.7
-
15
-
-
0035003594
-
Bacterial and archaeal 16S rDNA and 16S rRNA dynamics during an acetate crisis in an anaerobic digestor ecosystem
-
Delbes C, Moletta R, Godon J (2001) Bacterial and archaeal 16S rDNA and 16S rRNA dynamics during an acetate crisis in an anaerobic digestor ecosystem. FEMS Microbiol Ecol 35:19-26
-
(2001)
FEMS Microbiol Ecol
, vol.35
, pp. 19-26
-
-
Delbes, C.1
Moletta, R.2
Godon, J.3
-
16
-
-
34548171755
-
Aminiphilus circumscriptus gen. nov., sp. nov., an anaerobic aminoacid- degrading bacterium from an upflow anaerobic sludge reactor
-
Diaz C, Baena S, Fardeau ML, Patel BK (2007) Aminiphilus circumscriptus gen. nov., sp. nov., an anaerobic aminoacid- degrading bacterium from an upflow anaerobic sludge reactor. Int J Syst Evol Microbiol 57:1914-1918
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 1914-1918
-
-
Diaz, C.1
Baena, S.2
Fardeau, M.L.3
Patel, B.K.4
-
17
-
-
66249134456
-
Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity
-
Downes J, Vartoukian SR, Dewhirst FE, Izard J, Chen T, Yu WH, Sutcliffe IC, Wade WG (2009) Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity. Int J Syst Evol Microbiol 59:972-980
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 972-980
-
-
Downes, J.1
Vartoukian, S.R.2
Dewhirst, F.E.3
Izard, J.4
Chen, T.5
Yu, W.H.6
Sutcliffe, I.C.7
Wade, W.G.8
-
18
-
-
77957664849
-
Clostridium sticklandii, a specialist in amino acid degradation: Revisiting its metabolism through its genome sequence
-
Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, Perchat N, Pelletier E, Gouyvenoux M, Barbe V, Salanoubat M, Le Paslier D, Weissenbach J, Cohen GN, Kreimeyer A (2010) Clostridium sticklandii, a specialist in amino acid degradation: revisiting its metabolism through its genome sequence. BMC Genomics 11:555
-
(2010)
BMC Genomics
, vol.11
, pp. 555
-
-
Fonknechten, N.1
Chaussonnerie, S.2
Tricot, S.3
Lajus, A.4
Andreesen, J.R.5
Perchat, N.6
Pelletier, E.7
Gouyvenoux, M.8
Barbe, V.9
Salanoubat, M.10
Le Paslier, D.11
Weissenbach, J.12
Cohen, G.N.13
Kreimeyer, A.14
-
19
-
-
27844604206
-
Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria
-
Gao B, Gupta RS (2005) Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria. Int J Syst Evol Microbiol 55:2401-2412
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 2401-2412
-
-
Gao, B.1
Gupta, R.S.2
-
21
-
-
65549085150
-
The ultramicrobacterium "elusimicrobium minutum" gen. nov., sp. nov., the first cultivated representative of the termite group 1 phylum
-
Geissinger O, Herlemann DP, Morschel E, Maier UG, Brune A (2009) The ultramicrobacterium "Elusimicrobium minutum" gen. nov., sp. nov., the first cultivated representative of the termite group 1 phylum. Appl Environ Microbiol 75:2831-2840
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 2831-2840
-
-
Geissinger, O.1
Herlemann, D.P.2
Morschel, E.3
Maier, U.G.4
Brune, A.5
-
22
-
-
12744279470
-
Rarity associated with specific ecological niches in the bacterial world: The 'Synergistes' example
-
Godon JJ, Moriniere J, Moletta M, Gaillac M, Bru V, Delgenes JP (2005) Rarity associated with specific ecological niches in the bacterial world: the 'Synergistes' example. Environ Microbiol 7:213-224
-
(2005)
Environ Microbiol
, vol.7
, pp. 213-224
-
-
Godon, J.J.1
Moriniere, J.2
Moletta, M.3
Gaillac, M.4
Bru, V.5
Delgenes, J.P.6
-
23
-
-
31144455457
-
Molecular signatures in protein sequences that are characteristics of the phylum Aquificae
-
Griffiths E, Gupta RS (2006) Molecular signatures in protein sequences that are characteristics of the phylum Aquificae. Int J Syst Evol Microbiol 56:99-107
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 99-107
-
-
Griffiths, E.1
Gupta, R.S.2
-
24
-
-
23844479263
-
Conserved indels in essential proteins that are distinctive characteristics of Chlamydiales and provide novel means for their identification
-
Griffiths E, Petrich AK, Gupta RS (2005) Conserved indels in essential proteins that are distinctive characteristics of Chlamydiales and provide novel means for their identification. Microbiology 151:2647-2657
-
(2005)
Microbiology
, vol.151
, pp. 2647-2657
-
-
Griffiths, E.1
Petrich, A.K.2
Gupta, R.S.3
-
25
-
-
0026542877
-
Selenomonas acidaminovorans sp. nov., a versatile thermophilic proton-reducing anaerobe able to grow by decarboxylation of succinate to propionate
-
Guangsheng C, Plugge CM, Roelofsen W, Houwen FP, Stams AJM (1992) Selenomonas acidaminovorans sp. nov., a versatile thermophilic proton-reducing anaerobe able to grow by decarboxylation of succinate to propionate. Arch Microblol 157:169-175
-
(1992)
Arch Microblol
, vol.157
, pp. 169-175
-
-
Guangsheng, C.1
Plugge, C.M.2
Roelofsen, W.3
Houwen, F.P.4
Stams, A.J.M.5
-
26
-
-
0031794743
-
Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes
-
Gupta RS (1998) Protein phylogenies and signature sequences: a reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes. Microbiol Mol Biol Rev 62:1435-1491
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 1435-1491
-
-
Gupta, R.S.1
-
27
-
-
0033935581
-
The natural evolutionary relationships among prokaryotes
-
Gupta RS (2000) The natural evolutionary relationships among prokaryotes. Crit Rev Microbiol 26:111-131
-
(2000)
Crit Rev Microbiol
, vol.26
, pp. 111-131
-
-
Gupta, R.S.1
-
28
-
-
0035756272
-
The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins
-
Gupta RS (2001) The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins. Int Microbiol 4:187-202
-
(2001)
Int Microbiol
, vol.4
, pp. 187-202
-
-
Gupta, R.S.1
-
29
-
-
70350719159
-
Protein signatures (molecular synapomorphies) that are distinctive characteristics of the major cyanobacterial clades
-
Gupta RS (2009) Protein signatures (molecular synapomorphies) that are distinctive characteristics of the major cyanobacterial clades. Int J Syst Evol Microbiol 59:2510-2526
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 2510-2526
-
-
Gupta, R.S.1
-
30
-
-
79960739830
-
Origin of diderm (gram-negative) bacteria: Antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes
-
Gupta RS (2011) Origin of diderm (gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes. Antonie Van Leeuwenhoek 100:171-182
-
(2011)
Antonie Van Leeuwenhoek
, vol.100
, pp. 171-182
-
-
Gupta, R.S.1
-
31
-
-
79955123608
-
Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups
-
Gupta RS, Bhandari V (2011) Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups. Antonie Van Leeuwenhoek 100:1-34
-
(2011)
Antonie Van Leeuwenhoek
, vol.100
, pp. 1-34
-
-
Gupta, R.S.1
Bhandari, V.2
-
32
-
-
79952431206
-
Molecular signatures for the Crenarchaeota and the Thaumarchaeota
-
Gupta RS, Shami A (2011) Molecular signatures for the Crenarchaeota and the Thaumarchaeota. Antonie Van Leeuwenhoek 99:133-157
-
(2011)
Antonie Van Leeuwenhoek
, vol.99
, pp. 133-157
-
-
Gupta, R.S.1
Shami, A.2
-
33
-
-
67650021209
-
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
-
Hamady M, Knight R (2009) Microbial community profiling for human microbiome projects: tools, techniques, and challenges. Genome Res 19:1141-1152
-
(2009)
Genome Res
, vol.19
, pp. 1141-1152
-
-
Hamady, M.1
Knight, R.2
-
34
-
-
65549153499
-
Genomic analysis of "elusimicrobium minutum," the first cultivated representative of the phylum "elusimicrobia" (formerly termite group 1)
-
Herlemann DP, Geissinger O, Ikeda-Ohtsubo W, Kunin V, Sun H, Lapidus A, Hugenholtz P, Brune A (2009) Genomic analysis of "Elusimicrobium minutum," the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1). Appl Environ Microbiol 75:2841-2849
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 2841-2849
-
-
Herlemann, D.P.1
Geissinger, O.2
Ikeda-Ohtsubo, W.3
Kunin, V.4
Sun, H.5
Lapidus, A.6
Hugenholtz, P.7
Brune, A.8
-
35
-
-
0026595091
-
Synergistic degradation of bovine serum albumin by mutans streptococci and other dental plaque bacteria
-
Homer KA, Beighton D (1992) Synergistic degradation of bovine serum albumin by mutans streptococci and other dental plaque bacteria. FEMS Microbiol Lett 69:259-262
-
(1992)
FEMS Microbiol Lett
, vol.69
, pp. 259-262
-
-
Homer, K.A.1
Beighton, D.2
-
36
-
-
35148826387
-
The motility symbiont of the termite gut flagellate Caduceia versatilis is a member of the "synergistes" group
-
Hongoh Y, Sato T, Dolan MF, Noda S, Ui S, Kudo T, Ohkuma M (2007) The motility symbiont of the termite gut flagellate Caduceia versatilis is a member of the "Synergistes" group. Appl Environ Microbiol 73:6270-6276
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 6270-6276
-
-
Hongoh, Y.1
Sato, T.2
Dolan, M.F.3
Noda, S.4
Ui, S.5
Kudo, T.6
Ohkuma, M.7
-
37
-
-
59649129173
-
The effect of insertions and deletions on wirings in protein-protein interaction networks: A large-scale study
-
Hormozdiari F, Salari R, Hsing M, Schonhuth A, Chan SK, Sahinalp SC, Cherkasov A (2009) The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study. J Comput Biol 16:159-167
-
(2009)
J Comput Biol
, vol.16
, pp. 159-167
-
-
Hormozdiari, F.1
Salari, R.2
Hsing, M.3
Schonhuth, A.4
Chan, S.K.5
Sahinalp, S.C.6
Cherkasov, A.7
-
38
-
-
33747174025
-
Synergistes group organisms of human origin
-
Horz HP, Citron DM, Warren YA, Goldstein EJ, Conrads G (2006) Synergistes group organisms of human origin. J Clin Microbiol 44:2914-2920
-
(2006)
J Clin Microbiol
, vol.44
, pp. 2914-2920
-
-
Horz, H.P.1
Citron, D.M.2
Warren, Y.A.3
Goldstein, E.J.4
Conrads, G.5
-
39
-
-
19944428969
-
Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy
-
Hou S, Saw JH, Lee KS, Freitas TA, Belisle C, Kawarabayasi Y, Donachie SP, Pikina A, Galperin MY, Koonin EV, Makarova KS, Omelchenko MV, Sorokin A, Wolf YI, Li QX, Keum YS, Campbell S, Denery J, Aizawa S, Shibata S, Malahoff A, Alam M (2004) Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy. Proc Natl Acad Sci USA 101:18036-18041
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 18036-18041
-
-
Hou, S.1
Saw, J.H.2
Lee, K.S.3
Freitas, T.A.4
Belisle, C.5
Kawarabayasi, Y.6
Donachie, S.P.7
Pikina, A.8
Galperin, M.Y.9
Koonin, E.V.10
Makarova, K.S.11
Omelchenko, M.V.12
Sorokin, A.13
Wolf, Y.I.14
Li, Q.X.15
Keum, Y.S.16
Campbell, S.17
Denery, J.18
Aizawa, S.19
Shibata, S.20
Malahoff, A.21
Alam, M.22
more..
-
42
-
-
37448999779
-
Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum 'Synergistetes' isolated from man
-
Jumas-Bilak E, Carlier JP, Jean-Pierre H, Citron D, Bernard K, Damay A, Gay B, Teyssier C, Campos J, Marchandin H (2007) Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum 'Synergistetes' isolated from man. Int J Syst Evol Microbiol 57:2743-2748
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 2743-2748
-
-
Jumas-Bilak, E.1
Carlier, J.P.2
Jean-Pierre, H.3
Citron, D.4
Bernard, K.5
Damay, A.6
Gay, B.7
Teyssier, C.8
Campos, J.9
Marchandin, H.10
-
43
-
-
67649828064
-
Description of 'Synergistetes' phyl. nov. and emended description of the phylum 'Deferribacteres' and of the family Syntrophomonadaceae, phylum 'Firmicutes'
-
Jumas-Bilak E, Roudiere L, Marchandin H (2009) Description of 'Synergistetes' phyl. nov. and emended description of the phylum 'Deferribacteres' and of the family Syntrophomonadaceae, phylum 'Firmicutes'. Int J Syst Evol Microbiol 59:1028-1035
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 1028-1035
-
-
Jumas-Bilak, E.1
Roudiere, L.2
Marchandin, H.3
-
44
-
-
23744438967
-
Identification of candidate periodontal pathogens and beneficial species by quantitative 16S clonal analysis
-
Kumar PS, Griffen AL, Moeschberger ML, Leys EJ (2005) Identification of candidate periodontal pathogens and beneficial species by quantitative 16S clonal analysis. J Clin Microbiol 43:3944-3955
-
(2005)
J Clin Microbiol
, vol.43
, pp. 3944-3955
-
-
Kumar, P.S.1
Griffen, A.L.2
Moeschberger, M.L.3
Leys, E.J.4
-
45
-
-
80053341988
-
Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207)
-
Labutti K, Mayilraj S, Clum A, Lucas S, Glavina DR, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Goodwin L, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Spring S, Goker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A (2010) Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207). Stand Genomic Sci 3:85-92
-
(2010)
Stand Genomic Sci
, vol.3
, pp. 85-92
-
-
Labutti, K.1
Mayilraj, S.2
Clum, A.3
Lucas, S.4
Glavina, D.R.5
Nolan, M.6
Tice, H.7
Cheng, J.F.8
Pitluck, S.9
Liolios, K.10
Ivanova, N.11
Mavromatis, K.12
Mikhailova, N.13
Pati, A.14
Goodwin, L.15
Chen, A.16
Palaniappan, K.17
Land, M.18
Hauser, L.19
Chang, Y.J.20
Jeffries, C.D.21
Rohde, M.22
Spring, S.23
Goker, M.24
Woyke, T.25
Bristow, J.26
Eisen, J.A.27
Markowitz, V.28
Hugenholtz, P.29
Kyrpides, N.C.30
Klenk, H.P.31
Lapidus, A.32
more..
-
46
-
-
0030757801
-
Dethiosulfovibrio peptidovorans gen. nov., sp. nov., a new anaerobic, slightly halophilic, thiosulfate-reducing bacterium from corroding offshore oil wells
-
Magot M, Ravot G, Campaignolle X, Ollivier B, Patel BK, Fardeau ML, Thomas P, Crolet JL, Garcia JL (1997) Dethiosulfovibrio peptidovorans gen. nov., sp. nov., a new anaerobic, slightly halophilic, thiosulfate-reducing bacterium from corroding offshore oil wells. Int J Syst Bacteriol 47:818-824
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 818-824
-
-
Magot, M.1
Ravot, G.2
Campaignolle, X.3
Ollivier, B.4
Patel, B.K.5
Fardeau, M.L.6
Thomas, P.7
Crolet, J.L.8
Garcia, J.L.9
-
47
-
-
77949918515
-
Phylogeny, diversity and host specialization in the phylum Synergistetes with emphasis on strains and clones of human origin
-
Marchandin H, Damay A, Roudiere L, Teyssier C, Zorgniotti I, Dechaud H, Jean-Pierre H, Jumas-Bilak E (2010) Phylogeny, diversity and host specialization in the phylum Synergistetes with emphasis on strains and clones of human origin. Res Microbiol 161:91-100
-
(2010)
Res Microbiol
, vol.161
, pp. 91-100
-
-
Marchandin, H.1
Damay, A.2
Roudiere, L.3
Teyssier, C.4
Zorgniotti, I.5
Dechaud, H.6
Jean-Pierre, H.7
Jumas-Bilak, E.8
-
48
-
-
84859712312
-
Description of Anaerobaculum hydrogeniformans sp. nov., an anaerobe that produces hydrogen from glucose, and emended description of the genus Anaerobaculum
-
Maune MW, Tanner RS (2012) Description of Anaerobaculum hydrogeniformans sp. nov., an anaerobe that produces hydrogen from glucose, and emended description of the genus Anaerobaculum. Int J Syst Evol Microbiol 62: 832-838
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 832-838
-
-
Maune, M.W.1
Tanner, R.S.2
-
49
-
-
0027163875
-
Development of an oligonucleotide probe targeting 16S rRNA and its application for detection and quantitation of the ruminal bacterium Synergistes jonesii in a mixed-population chemostat
-
McSweeney CS, Mackie RI, Odenyo AA, Stahl DA (1993) Development of an oligonucleotide probe targeting 16S rRNA and its application for detection and quantitation of the ruminal bacterium Synergistes jonesii in a mixed-population chemostat. Appl Environ Microbiol 59:1607-1612
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 1607-1612
-
-
McSweeney, C.S.1
Mackie, R.I.2
Odenyo, A.A.3
Stahl, D.A.4
-
50
-
-
84856224255
-
Molecular signatures (conserved indels) in protein sequences that are specific for the order Pasteurellales and distinguish two of its main clades
-
Naushad HS, Gupta RS (2012) Molecular signatures (conserved indels) in protein sequences that are specific for the order Pasteurellales and distinguish two of its main clades. Antonie Van Leeuwenhoek 101:105-124
-
(2012)
Antonie Van Leeuwenhoek
, vol.101
, pp. 105-124
-
-
Naushad, H.S.1
Gupta, R.S.2
-
51
-
-
84892623922
-
-
Accessed 5 May 2012
-
NCBI genomic database (2012) http://www.ncbi.nlm.nih.gov/genomes/lproks. cgi. Accessed 5 May 2012
-
(2012)
NCBI Genomic Database
-
-
-
52
-
-
84892585244
-
-
Accessed 5 May 2012
-
NCBI Taxonomy (2012) http://www.ncbi.nlm.nih.gov/taxonomy. Accessed 5 May 2012
-
(2012)
NCBI Taxonomy
-
-
-
53
-
-
80053461586
-
Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3)
-
Pitluck S, Yasawong M, Held B, Lapidus A, Nolan M, Copeland A, Lucas S, Del Rio TG, Tice H, Cheng JF, Chertkov O, Goodwin L, Tapia R, Han C, Liolios K, Ivanova N, Mavromatis K,OvchinnikovaG, Pati A, ChenA, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Pukall R, Spring S, Rohde M, Sikorski J, Goker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP (2010) Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3). Stand Genomic Sci 3:285-293
-
(2010)
Stand Genomic Sci
, vol.3
, pp. 285-293
-
-
Pitluck, S.1
Yasawong, M.2
Held, B.3
Lapidus, A.4
Nolan, M.5
Copeland, A.6
Lucas, S.7
Del Rio, T.G.8
Tice, H.9
Cheng, J.F.10
Chertkov, O.11
Goodwin, L.12
Tapia, R.13
Han, C.14
Liolios, K.15
Ivanova, N.16
Mavromatis, K.17
Ovchinnikova, G.18
Pati, A.19
Chen, A.20
Palaniappan, K.21
Land, M.22
Hauser, L.23
Chang, Y.J.24
Jeffries, C.D.25
Pukall, R.26
Spring, S.27
Rohde, M.28
Sikorski, J.29
Goker, M.30
Woyke, T.31
Bristow, J.32
Eisen, J.A.33
Markowitz, V.34
Hugenholtz, P.35
Kyrpides, N.C.36
Klenk, H.P.37
more..
-
54
-
-
0026684272
-
Evidence that eukaryotes and eocyte prokaryotes are immediate relatives
-
Rivera MC, Lake JA (1992) Evidence that eukaryotes and eocyte prokaryotes are immediate relatives. Science 257:74-76
-
(1992)
Science
, vol.257
, pp. 74-76
-
-
Rivera, M.C.1
Lake, J.A.2
-
55
-
-
67549099704
-
Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge
-
Riviere D, Desvignes V, Pelletier E, Chaussonnerie S, Guermazi S,Weissenbach J, Li T,Camacho P, SghirA(2009) Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. ISME J 3:700-714
-
(2009)
ISME J
, vol.3
, pp. 700-714
-
-
Riviere, D.1
Desvignes, V.2
Pelletier, E.3
Chaussonnerie, S.4
Guermazi, S.5
Weissenbach, J.6
Li, T.7
Camacho, P.8
Sghir, A.9
-
56
-
-
0033793019
-
Rare genomic changes as a tool for phylogenetics
-
Rokas A, Holland PW (2000) Rare genomic changes as a tool for phylogenetics. Trends Ecol Evol 15:454-459
-
(2000)
Trends Ecol Evol
, vol.15
, pp. 454-459
-
-
Rokas, A.1
Holland, P.W.2
-
57
-
-
0242365676
-
Genomescale approaches to resolving incongruence in molecular phylogenies
-
Rokas A, Williams BL, King N, Carroll SB (2003) Genomescale approaches to resolving incongruence in molecular phylogenies. Nature 425:798-804
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
Williams, B.L.2
King, N.3
Carroll, S.B.4
-
58
-
-
66149157930
-
Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth
-
Singh B, Gupta RS (2009) Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth. Mol Genet Genomics 281:361-373
-
(2009)
Mol Genet Genomics
, vol.281
, pp. 361-373
-
-
Singh, B.1
Gupta, R.S.2
-
59
-
-
33947199716
-
Phylogenetic position of Salinibacter ruber based on concatenated protein alignments
-
Soria-Carrasco V, Valens-Vadell M, Pena A, Anton J, Amann R, Castresana J, Rossello-Mora R (2007) Phylogenetic position of Salinibacter ruber based on concatenated protein alignments. Syst Appl Microbiol 30:171-179
-
(2007)
Syst Appl Microbiol
, vol.30
, pp. 171-179
-
-
Soria-Carrasco, V.1
Valens-Vadell, M.2
Pena, A.3
Anton, J.4
Amann, R.5
Castresana, J.6
Rossello-Mora, R.7
-
60
-
-
0035069510
-
Dethiosulfovibrio russensis sp. nov., Dethosulfovibrio marinus sp. nov. and Dethosulfovibrio acidaminovorans sp. nov., novel anaerobic, thiosulfate- and sulfurreducing bacteria isolated from 'Thiodendron' sulfur mats in different saline environments
-
Surkov AV, Dubinina GA, Lysenko AM, Glockner FO, Kuever J (2001) Dethiosulfovibrio russensis sp. nov., Dethosulfovibrio marinus sp. nov. and Dethosulfovibrio acidaminovorans sp. nov., novel anaerobic, thiosulfate- and sulfurreducing bacteria isolated from 'Thiodendron' sulfur mats in different saline environments. Int J Syst Evol Microbiol 51:327-337
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 327-337
-
-
Surkov, A.V.1
Dubinina, G.A.2
Lysenko, A.M.3
Glockner, F.O.4
Kuever, J.5
-
61
-
-
77956988767
-
A phylum level perspective on bacterial cell envelope architecture
-
Sutcliffe IC (2010) A phylum level perspective on bacterial cell envelope architecture. Trends Microbiol 18:464-470
-
(2010)
Trends Microbiol
, vol.18
, pp. 464-470
-
-
Sutcliffe, I.C.1
-
63
-
-
77954362069
-
Cultivation of a Synergistetes strain representing a previously uncultivated lineage
-
Vartoukian SR, Palmer RM, Wade WG (2010) Cultivation of a Synergistetes strain representing a previously uncultivated lineage. Environ Microbiol 12:916-928
-
(2010)
Environ Microbiol
, vol.12
, pp. 916-928
-
-
Vartoukian, S.R.1
Palmer, R.M.2
Wade, W.G.3
-
64
-
-
84874033512
-
Fretibacterium fastidiosum gen. nov., sp. nov., isolated from the human oral cavity
-
doi:10.1099/ijs.0.041038-0
-
Vartoukian S, Downes J, Palmer RM, Wade WG (2012) Fretibacterium fastidiosum gen. nov., sp. nov., isolated from the human oral cavity. Int J Syst Evol Microbiol. doi:10.1099/ijs.0.041038-0
-
(2012)
Int J Syst Evol Microbiol.
-
-
Vartoukian, S.1
Downes, J.2
Palmer, R.M.3
Wade, W.G.4
-
65
-
-
0032752145
-
Proteolysis and utilization of albumin by enrichment cultures of subgingival microbiota
-
Wei GX, van der Hoeven JS, Smalley JW, Mikx FH, Fan MW (1999) Proteolysis and utilization of albumin by enrichment cultures of subgingival microbiota. Oral Microbiol Immunol 14:348-351
-
(1999)
Oral Microbiol Immunol
, vol.14
, pp. 348-351
-
-
Wei, G.X.1
Van Der Hoeven, J.S.2
Smalley, J.W.3
Mikx, F.H.4
Fan, M.W.5
-
66
-
-
55649110049
-
A simple, fast, and accurate method of phylogenomic inference
-
Wu M, Eisen JA (2008) A simple, fast, and accurate method of phylogenomic inference. Genome Biol 9:R151
-
(2008)
Genome Biol
, vol.9
-
-
Wu, M.1
Eisen, J.A.2
-
67
-
-
65249126970
-
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
-
Zhaxybayeva O, Swithers KS, Lapierre P, Fournier GP, Bickhart DM, DeBoy RT, Nelson KE, Nesbo CL, Doolittle WF, Gogarten JP, Noll KM (2009) On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales. Proc Natl Acad Sci USA 106:5865-5870
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5865-5870
-
-
Zhaxybayeva, O.1
Swithers, K.S.2
Lapierre, P.3
Fournier, G.P.4
Bickhart, D.M.5
Deboy, R.T.6
Nelson, K.E.7
Nesbo, C.L.8
Doolittle, W.F.9
Gogarten, J.P.10
Noll, K.M.11
-
68
-
-
79952572730
-
Bacteria and archaea involved in anaerobic digestion of distillers grains with solubles
-
Ziganshin AM, Schmidt T, Scholwin F, Il'inskaya ON, Harms H, Kleinsteuber S (2011) Bacteria and archaea involved in anaerobic digestion of distillers grains with solubles. Appl Microbiol Biotechnol 89:2039-2052
-
(2011)
Appl Microbiol Biotechnol
, vol.89
, pp. 2039-2052
-
-
Ziganshin, A.M.1
Schmidt, T.2
Scholwin, F.3
Il'Inskaya, O.N.4
Harms, H.5
Kleinsteuber, S.6
-
69
-
-
77949759705
-
Oral biofilm architecture on natural teeth
-
Zijnge V, van Leeuwen MB, Degener JE, Abbas F, Thurnheer T, Gmur R, Harmsen HJ (2010) Oral biofilm architecture on natural teeth. PLoS ONE 5:e9321
-
(2010)
PLoS ONE
, vol.5
-
-
Zijnge, V.1
Van Leeuwen, M.B.2
Degener, J.E.3
Abbas, F.4
Thurnheer, T.5
Gmur, R.6
Harmsen, H.J.7
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