-
1
-
-
0014378880
-
The origin of the genetic code
-
Crick FH. The origin of the genetic code. J Mol Biol 1968; 38: 367-79.
-
(1968)
J Mol Biol
, vol.38
, pp. 367-379
-
-
Crick, F.H.1
-
2
-
-
0018577407
-
A different genetic code in human mitochondria
-
Barrell BG, Bankier AT, Drouin J. A different genetic code in human mitochondria. Nature 1979; 282: 189-94.
-
(1979)
Nature
, vol.282
, pp. 189-194
-
-
Barrell, B.G.1
Bankier, A.T.2
Drouin, J.3
-
3
-
-
0021861277
-
UGA is read as tryptophan in Mycoplasma capricolum
-
Yamao F, Muto A, Kawauchi Y, Iwami M, Iwagami S, Azumi Y, Osawa S. UGA is read as tryptophan in Mycoplasma capricolum. Proc Natl Acad Sci USA 1985; 82: 2306-9.
-
(1985)
Proc Natl Acad Sci USA
, vol.82
, pp. 2306-2309
-
-
Yamao, F.1
Muto, A.2
Kawauchi, Y.3
Iwami, M.4
Iwagami, S.5
Azumi, Y.6
Osawa, S.7
-
4
-
-
0026016632
-
UGA can be decoded as tryptophan at low efficiency in Bacillus subtilis
-
Lovett PS, Ambulos NP, Mulbry W, Noguchi N, Rogers EJ. UGA can be decoded as tryptophan at low efficiency in Bacillus subtilis. J Bacteriol 1991; 173: 1810-2.
-
(1991)
J Bacteriol
, vol.173
, pp. 1810-1812
-
-
Lovett, P.S.1
Ambulos, N.P.2
Mulbry, W.3
Noguchi, N.4
Rogers, E.J.5
-
5
-
-
68249126127
-
Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont
-
McCutcheon JP, McDonald BR, Moran NA. Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont. PLoS Genet 2009; 5: e1000565.
-
(2009)
PLoS Genet
, vol.5
-
-
McCutcheon, J.P.1
McDonald, B.R.2
Moran, N.A.3
-
6
-
-
0035936577
-
The molecular basis of nuclear genetic code change in ciliates
-
Lozupone CA, Knight RD, Landweber LF. The molecular basis of nuclear genetic code change in ciliates. Curr Biol 2001; 11: 65-74.
-
(2001)
Curr Biol
, vol.11
, pp. 65-74
-
-
Lozupone, C.A.1
Knight, R.D.2
Landweber, L.F.3
-
7
-
-
0037418581
-
A new noncanonical nuclear genetic code: Translation of UAA into glutamate
-
Sánchez-Silva R, Villalobo E, Morin L, Torres A. A new noncanonical nuclear genetic code: translation of UAA into glutamate. Curr Biol 2003; 13: 442-7.
-
(2003)
Curr Biol
, vol.13
, pp. 442-447
-
-
Sánchez-Silva, R.1
Villalobo, E.2
Morin, L.3
Torres, A.4
-
8
-
-
0025923213
-
Sequences of two rbcS cDNA clones of Batophora oerstedii: Structural and evolutionary considerations
-
Schneider SU, Groot EJ de. Sequences of two rbcS cDNA clones of Batophora oerstedii: structural and evolutionary considerations. Curr Genet 1991; 20: 173-5.
-
(1991)
Curr Genet
, vol.20
, pp. 173-175
-
-
Schneider, S.U.1
De Groot, E.J.2
-
9
-
-
0030802495
-
Widespread and ancient distribution of a noncanonical genetic code in diplomonads
-
Keeling PJ, Doolittle WF. Widespread and ancient distribution of a noncanonical genetic code in diplomonads. Mol Biol Evol 1997; 14: 895-901.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 895-901
-
-
Keeling, P.J.1
Doolittle, W.F.2
-
10
-
-
0037424615
-
Characterisation of a non-canonical genetic code in the oxymonad Streblomastix strix
-
Keeling PJ, Leander BS. Characterisation of a non-canonical genetic code in the oxymonad Streblomastix strix. J Mol Biol 2003; 326: 1337-49.
-
(2003)
J Mol Biol
, vol.326
, pp. 1337-1349
-
-
Keeling, P.J.1
Leander, B.S.2
-
11
-
-
85044685244
-
Genetic code: Enter a new amino acid
-
Söll D. Genetic code: enter a new amino acid. Nature 1988; 331: 662-3.
-
(1988)
Nature
, vol.331
, pp. 662-663
-
-
Söll, D.1
-
12
-
-
0037165964
-
A new UAG-encoded residue in the structure of a methanogen methyltransferase
-
Hao B, Gong W, Ferguson TK, James CM, Krzycki JA, Chan MK. A new UAG-encoded residue in the structure of a methanogen methyltransferase. Science 2002; 296: 1462-6.
-
(2002)
Science
, vol.296
, pp. 1462-1466
-
-
Hao, B.1
Gong, W.2
Ferguson, T.K.3
James, C.M.4
Krzycki, J.A.5
Chan, M.K.6
-
13
-
-
0037166006
-
Pyrrolysine encoded by UAG in Archaea: Charging of a UAG-decoding specialized tRNA
-
Srinivasan G, James CM, Krzycki JA. Pyrrolysine encoded by UAG in Archaea: charging of a UAG-decoding specialized tRNA. Science 2002; 296: 1459-62.
-
(2002)
Science
, vol.296
, pp. 1459-1462
-
-
Srinivasan, G.1
James, C.M.2
Krzycki, J.A.3
-
14
-
-
0033023336
-
Non-universal usage of the leucine CUG codon and the molecular phylogeny of the genus Candida
-
Sugita T, Nakase T. Non-universal usage of the leucine CUG codon and the molecular phylogeny of the genus Candida. Syst Appl Microbiol 1999; 22: 79-86.
-
(1999)
Syst Appl Microbiol
, vol.22
, pp. 79-86
-
-
Sugita, T.1
Nakase, T.2
-
15
-
-
3643114575
-
Universal rules and idiosyncratic features in tRNA identity
-
Giege R. Universal rules and idiosyncratic features in tRNA identity. Nucleic Acids Res 1998; 26: 5017-35.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 5017-5035
-
-
Giege, R.1
-
17
-
-
0033572678
-
C to U editing of the anticodon of imported mitochondrial tRNA(Trp) allows decoding of the UGA stop codon in Leishmania tarentolae
-
Alfonzo JD, Blanc V, Est é vez AM, Rubio MA, Simpson L. C to U editing of the anticodon of imported mitochondrial tRNA(Trp) allows decoding of the UGA stop codon in Leishmania tarentolae. EMBO J 1999; 18: 7056-62.
-
(1999)
EMBO J
, vol.18
, pp. 7056-7062
-
-
Alfonzo, J.D.1
Blanc, V.2
Est Vez, É.A.M.3
Rubio, M.A.4
Simpson, L.5
-
19
-
-
0027369542
-
Rules that govern tRNA identity in protein synthesis
-
McClain WH. Rules that govern tRNA identity in protein synthesis. J Mol Biol 1993; 234: 257-80.
-
(1993)
J Mol Biol
, vol.234
, pp. 257-280
-
-
McClain, W.H.1
-
20
-
-
84860364684
-
Nematode-specific tRNAs that decode an alternative genetic code for leucine
-
Hamashima K, Fujishima K, Masuda T, Sugahara J, Tomita M, Kanai A. Nematode-specific tRNAs that decode an alternative genetic code for leucine. Nucleic Acids Res 2012; 40: 3653-62.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3653-3662
-
-
Hamashima, K.1
Fujishima, K.2
Masuda, T.3
Sugahara, J.4
Tomita, M.5
Kanai, A.6
-
21
-
-
72449205918
-
Disrupted tRNA gene diversity and possible evolutionary scenarios
-
Sugahara J, Fujishima K, Morita K, Tomita M, Kanai A. Disrupted tRNA gene diversity and possible evolutionary scenarios. J Mol Evol 2009; 69: 497-504.
-
(2009)
J Mol Evol
, vol.69
, pp. 497-504
-
-
Sugahara, J.1
Fujishima, K.2
Morita, K.3
Tomita, M.4
Kanai, A.5
-
22
-
-
71549147812
-
TRNAs: Cellular barcodes for amino acids
-
Banerjee R, Chen S, Dare K, Gilreath M, Praetorius-Ibba M, Raina M, Reynolds NM, Rogers T, Roy H, Yadavalli SS, Ibba M. tRNAs: cellular barcodes for amino acids. FEBS Lett 2010; 584: 387-95.
-
(2010)
FEBS Lett
, vol.584
, pp. 387-395
-
-
Banerjee, R.1
Chen, S.2
Dare, K.3
Gilreath, M.4
Praetorius-Ibba, M.5
Raina, M.6
Reynolds, N.M.7
Rogers, T.8
Roy, H.9
Yadavalli, S.S.10
Ibba, M.11
-
23
-
-
0031804156
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl M, Horn C, Brown M, Ioudovitch A, Steinberg S. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res 1998; 26: 148-53.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 148-153
-
-
Sprinzl, M.1
Horn, C.2
Brown, M.3
Ioudovitch, A.4
Steinberg, S.5
-
24
-
-
0029134028
-
Identity elements of human tRNA(Leu): Structural requirements for converting human tRNA(Ser) into a leucine acceptor in vitro
-
Breitschopf K, Achsel T, Busch K, Gross HJ. Identity elements of human tRNA(Leu): structural requirements for converting human tRNA(Ser) into a leucine acceptor in vitro. Nucleic Acids Res 1995; 23: 3633-7.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 3633-3637
-
-
Breitschopf, K.1
Achsel, T.2
Busch, K.3
Gross, H.J.4
-
25
-
-
0033550199
-
Unique recognition style of tRNA(Leu) by Haloferax volcanii leucyl-tRNA synthetase
-
Soma A, Uchiyama K, Sakamoto T, Maeda M, Himeno H. Unique recognition style of tRNA(Leu) by Haloferax volcanii leucyl-tRNA synthetase. J Mol Biol 1999; 293: 1029-38.
-
(1999)
J Mol Biol
, vol.293
, pp. 1029-1038
-
-
Soma, A.1
Uchiyama, K.2
Sakamoto, T.3
Maeda, M.4
Himeno, H.5
-
27
-
-
0037099498
-
Class i tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition
-
Yaremchuk A, Kriklivyi I, Tukalo M, Cusack S. Class I tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition. EMBO J 2002; 21: 3829-40.
-
(2002)
EMBO J
, vol.21
, pp. 3829-3840
-
-
Yaremchuk, A.1
Kriklivyi, I.2
Tukalo, M.3
Cusack, S.4
-
28
-
-
71549136142
-
Development of the genetic code: Insights from a fungal codon reassignment
-
Moura GR, Paredes JA, Santos MAS. Development of the genetic code: insights from a fungal codon reassignment. FEBS Lett 2010; 584: 334-41.
-
(2010)
FEBS Lett
, vol.584
, pp. 334-341
-
-
Moura, G.R.1
Paredes, J.A.2
Santos, M.A.S.3
-
29
-
-
58149389394
-
Genetic code supports targeted insertion of two amino acids by one codon
-
Turanov AA, Lobanov AV, Fomenko DE, Morrison HG, Sogin ML, Klobutcher LA, Hatfield DL, Gladyshev VN. Genetic code supports targeted insertion of two amino acids by one codon. Science 2009; 323: 259-61.
-
(2009)
Science
, vol.323
, pp. 259-261
-
-
Turanov, A.A.1
Lobanov, A.V.2
Fomenko, D.E.3
Morrison, H.G.4
Sogin, M.L.5
Klobutcher, L.A.6
Hatfield, D.L.7
Gladyshev, V.N.8
-
30
-
-
0030138792
-
On malleability in the genetic code
-
Schultz DW, Yarus M. On malleability in the genetic code. J Mol Evol 1996; 42: 597-601.
-
(1996)
J Mol Evol
, vol.42
, pp. 597-601
-
-
Schultz, D.W.1
Yarus, M.2
-
31
-
-
0031051572
-
The polysemous codon-A codon with multiple amino acid assignment caused by dual specificity of tRNA identity
-
Suzuki T, Ueda T, Watanabe K. The polysemous codon-a codon with multiple amino acid assignment caused by dual specificity of tRNA identity. EMBO J 1997; 16: 1122-34.
-
(1997)
EMBO J
, vol.16
, pp. 1122-1134
-
-
Suzuki, T.1
Ueda, T.2
Watanabe, K.3
-
32
-
-
39149086991
-
A genetic code alteration generates a proteome of high diversity in the human pathogen Candida albicans
-
Gomes AC, Miranda I, Silva RM, Moura GR, Thomas B, Akoulitchev A, Santos MAS. A genetic code alteration generates a proteome of high diversity in the human pathogen Candida albicans. Genome Biol 2007; 8: R206.
-
(2007)
Genome Biol
, vol.8
-
-
Gomes, A.C.1
Miranda, I.2
Silva, R.M.3
Moura, G.R.4
Thomas, B.5
Akoulitchev, A.6
Santos, M.A.S.7
-
33
-
-
39149117967
-
A genetic code alteration is a phenotype diversity generator in the human pathogen Candida albicans
-
Miranda I, Rocha R, Santos MC, Mateus DD, Moura GR, Carreto L, Santos MAS. A genetic code alteration is a phenotype diversity generator in the human pathogen Candida albicans. PLoS One 2007; 2: e996.
-
(2007)
PLoS One
, vol.2
-
-
Miranda, I.1
Rocha, R.2
Santos, M.C.3
Mateus, D.D.4
Moura, G.R.5
Carreto, L.6
Santos, M.A.S.7
-
34
-
-
0028332057
-
Transfer RNA mutation and the malleability of the genetic code
-
Schultz DW, Yarus M. Transfer RNA mutation and the malleability of the genetic code. J Mol Biol 1994; 235: 1377-80.
-
(1994)
J Mol Biol
, vol.235
, pp. 1377-1380
-
-
Schultz, D.W.1
Yarus, M.2
-
35
-
-
56449099760
-
Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales
-
Sugahara J, Kikuta K, Fujishima K, Yachie N, Tomita M, Kanai A. Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales. Mol Biol Evol 2008; 25: 2709-16.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 2709-2716
-
-
Sugahara, J.1
Kikuta, K.2
Fujishima, K.3
Yachie, N.4
Tomita, M.5
Kanai, A.6
-
36
-
-
13444251251
-
Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5-and 3-halves
-
Randau L, Münch R, Hohn MJ, Jahn D, Söll D. Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5-and 3-halves. Nature 2005; 433: 537-41.
-
(2005)
Nature
, vol.433
, pp. 537-541
-
-
Randau, L.1
Münch, R.2
Hohn, M.J.3
Jahn, D.4
Söll, D.5
-
37
-
-
62449123460
-
Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea
-
Fujishima K, Sugahara J, Kikuta K, Hirano R, Sato A, Tomita M, Kanai A. Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea. Proc Natl Acad Sci USA 2009; 106: 2683-7.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 2683-2687
-
-
Fujishima, K.1
Sugahara, J.2
Kikuta, K.3
Hirano, R.4
Sato, A.5
Tomita, M.6
Kanai, A.7
-
38
-
-
35348946378
-
Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae
-
Soma A, Onodera A, Sugahara J, Kanai A, Yachie N, Tomita M, Kawamura F, Sekine Y. Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae. Science 2007; 318: 450-3.
-
(2007)
Science
, vol.318
, pp. 450-453
-
-
Soma, A.1
Onodera, A.2
Sugahara, J.3
Kanai, A.4
Yachie, N.5
Tomita, M.6
Kawamura, F.7
Sekine, Y.8
-
39
-
-
77951529990
-
Permuted tRNA genes in the nuclear and nucleomorph genomes of photosynthetic eukaryotes
-
Maruyama S, Sugahara J, Kanai A, Nozaki H. Permuted tRNA genes in the nuclear and nucleomorph genomes of photosynthetic eukaryotes. Mol Biol Evol 2009; 27: 1070-6.
-
(2009)
Mol Biol Evol
, vol.27
, pp. 1070-1076
-
-
Maruyama, S.1
Sugahara, J.2
Kanai, A.3
Nozaki, H.4
-
40
-
-
79953861250
-
Discovery of permuted and recently split transfer RNAs in Archaea
-
Chan PP, Cozen AE, Lowe TM. Discovery of permuted and recently split transfer RNAs in Archaea. Genome Biol 2011; 12: R38.
-
(2011)
Genome Biol
, vol.12
-
-
Chan, P.P.1
Cozen, A.E.2
Lowe, T.M.3
-
41
-
-
84868624912
-
Aspects of HIV-1 assembly that promote primer tRNA(Lys3) annealing to viral RNA
-
Saadatmand J, Kleiman L. Aspects of HIV-1 assembly that promote primer tRNA(Lys3) annealing to viral RNA. Virus Res 2012; 169: 340-8.
-
(2012)
Virus Res
, vol.169
, pp. 340-348
-
-
Saadatmand, J.1
Kleiman, L.2
-
42
-
-
27144510561
-
Translational regulation of GCN4 and the general amino acid control of yeast
-
Hinnebusch AG. Translational regulation of GCN4 and the general amino acid control of yeast. Annu Rev Microbiol 2005; 59: 407-50.
-
(2005)
Annu Rev Microbiol
, vol.59
, pp. 407-450
-
-
Hinnebusch, A.G.1
-
43
-
-
0036809217
-
Dissection of the mechanism for the stringent factor RelA
-
Wendrich TM, Blaha G, Wilson DN, Marahiel MA, Nierhaus KH. Dissection of the mechanism for the stringent factor RelA. Mol Cell 2002; 10: 779-88.
-
(2002)
Mol Cell
, vol.10
, pp. 779-788
-
-
Wendrich, T.M.1
Blaha, G.2
Wilson, D.N.3
Marahiel, M.A.4
Nierhaus, K.H.5
-
44
-
-
58049217240
-
Riboswitch RNAs: Using RNA to sense cellular metabolism
-
Henkin TM. Riboswitch RNAs: using RNA to sense cellular metabolism. Genes Dev 2008; 22: 3383-90.
-
(2008)
Genes Dev
, vol.22
, pp. 3383-3390
-
-
Henkin, T.M.1
-
45
-
-
0035821289
-
Staphylococcus aureus resistance to human defensins and evasion of neutrophil killing via the novel virulence factor MprF is based on modification of membrane lipids with l-lysine
-
Peschel A, Jack RW, Otto M, Collins L V, Staubitz P, Nicholson G, Kalbacher H, Nieuwenhuizen WF, Jung G, Tarkowski A, Kessel KP van, Strijp JA van. Staphylococcus aureus resistance to human defensins and evasion of neutrophil killing via the novel virulence factor MprF is based on modification of membrane lipids with l-lysine. J Exp Med 2001; 193: 1067-76.
-
(2001)
J Exp Med
, vol.193
, pp. 1067-1076
-
-
Peschel, A.1
Jack, R.W.2
Otto, M.3
Collins, L.V.4
Staubitz, P.5
Nicholson, G.6
Kalbacher, H.7
Nieuwenhuizen, W.F.8
Jung, G.9
Tarkowski, A.10
Van Kessel, K.P.11
Van Strijp, J.A.12
-
46
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997; 25: 955-64.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
47
-
-
1242297827
-
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
-
Laslett D, Canback B. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res 2004; 32: 11-6.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 11-16
-
-
Laslett, D.1
Canback, B.2
-
48
-
-
33845244847
-
SPLITS: A new program for predicting split and introncontaining tRNA genes at the genome level
-
Sugahara J, Yachie N, Sekine Y, Soma A, Matsui M, Tomita M, Kanai A. SPLITS: a new program for predicting split and introncontaining tRNA genes at the genome level. In Silico Biol 2006; 6: 411-8.
-
(2006)
Silico Biol
, vol.6
, pp. 411-418
-
-
Sugahara, J.1
Yachie, N.2
Sekine, Y.3
Soma, A.4
Matsui, M.5
Tomita, M.6
Kanai, A.7
-
49
-
-
34247357415
-
In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs
-
Sugahara J, Yachie N, Arakawa K, Tomita M. In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs. RNA 2007; 13: 671-81.
-
(2007)
RNA
, vol.13
, pp. 671-681
-
-
Sugahara, J.1
Yachie, N.2
Arakawa, K.3
Tomita, M.4
-
51
-
-
85011942131
-
The CCA anticodon specifies separate functions inside and outside translation in Bacillus cereus
-
Ataide SF, Rogers TE, Ibba M. The CCA anticodon specifies separate functions inside and outside translation in Bacillus cereus. RNA Biol 2009; 6: 479-87.
-
(2009)
RNA Biol
, vol.6
, pp. 479-487
-
-
Ataide, S.F.1
Rogers, T.E.2
Ibba, M.3
-
52
-
-
84864018381
-
A pseudo-tRNA modulates antibiotic resistance in Bacillus cereus
-
Rogers TE, Ataide SF, Dare K, Katz A, Seveau S, Roy H, Ibba M. A pseudo-tRNA modulates antibiotic resistance in Bacillus cereus. PLoS One 2012; 7: e41248.
-
(2012)
PLoS One
, vol.7
-
-
Rogers, T.E.1
Ataide, S.F.2
Dare, K.3
Katz, A.4
Seveau, S.5
Roy, H.6
Ibba, M.7
-
53
-
-
70349921337
-
TRNA genes in eukaryotic genome organization and reorganization
-
McFarlane RJ, Whitehall SK. tRNA genes in eukaryotic genome organization and reorganization. Cell Cycle 2009; 8: 3102-6.
-
(2009)
Cell Cycle
, vol.8
, pp. 3102-3106
-
-
McFarlane, R.J.1
Whitehall, S.K.2
-
54
-
-
80051751605
-
TRNA genes protect a reporter gene from epigenetic silencing in mouse cells
-
Ebersole T, Kim J-H, Samoshkin A, Kouprina N, Pavlicek A, White RJ, Larionov V. tRNA genes protect a reporter gene from epigenetic silencing in mouse cells. Cell Cycle 2011; 10: 2779-91.
-
(2011)
Cell Cycle
, vol.10
, pp. 2779-2791
-
-
Ebersole, T.1
Kim, J.-H.2
Samoshkin, A.3
Kouprina, N.4
Pavlicek, A.5
White, R.J.6
Larionov, V.7
-
55
-
-
84857190176
-
Human tRNA genes function as chromatin insulators
-
Raab JR, Chiu J, Zhu J, Katzman S, Kurukuti S, Wade PA, Haussler D, Kamakaka RT. Human tRNA genes function as chromatin insulators. EMBO J 2012; 31: 330-50.
-
(2012)
EMBO J
, vol.31
, pp. 330-350
-
-
Raab, J.R.1
Chiu, J.2
Zhu, J.3
Katzman, S.4
Kurukuti, S.5
Wade, P.A.6
Haussler, D.7
Kamakaka, R.T.8
-
56
-
-
25644455262
-
Fidelity in protein synthesis
-
Cochella L, Green R. Fidelity in protein synthesis. Curr Biol 2005; 15: R536-40.
-
(2005)
Curr Biol
, vol.15
-
-
Cochella, L.1
Green, R.2
-
57
-
-
70849104780
-
Innate immune and chemically triggered oxidative stress modifies translational fidelity
-
Netzer N, Goodenbour JM, David A, Dittmar KA, Jones RB, Schneider JR, Boone D, Eves EM, Rosner MR, Gibbs JS, Embry A, Dolan B, Das S, Hickman HD, Berglund P, Bennink JR, Yewdell JW, Pan T. Innate immune and chemically triggered oxidative stress modifies translational fidelity. Nature 2009; 462: 522-6.
-
(2009)
Nature
, vol.462
, pp. 522-526
-
-
Netzer, N.1
Goodenbour, J.M.2
David, A.3
Dittmar, K.A.4
Jones, R.B.5
Schneider, J.R.6
Boone, D.7
Eves, E.M.8
Rosner, M.R.9
Gibbs, J.S.10
Embry, A.11
Dolan, B.12
Das, S.13
Hickman, H.D.14
Berglund, P.15
Bennink, J.R.16
Yewdell, J.W.17
Pan, T.18
-
58
-
-
79955558384
-
Misacylation of specific nonmethionyl tRNAs by a bacterial methionyl-tRNA synthetase
-
Jones TE, Alexander RW, Pan T. Misacylation of specific nonmethionyl tRNAs by a bacterial methionyl-tRNA synthetase. Proc Natl Acad Sci USA 2011; 108: 6933-8.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 6933-6938
-
-
Jones, T.E.1
Alexander, R.W.2
Pan, T.3
-
60
-
-
67650604265
-
Stressing out over tRNA cleavage
-
Thompson DM, Parker R. Stressing out over tRNA cleavage. Cell 2009; 138: 215-9.
-
(2009)
Cell
, vol.138
, pp. 215-219
-
-
Thompson, D.M.1
Parker, R.2
-
61
-
-
0036589213
-
The modes of action of colicins E5 and D, and related cytotoxic tRNases
-
Masaki H, Ogawa T. The modes of action of colicins E5 and D, and related cytotoxic tRNases. Biochimie 2002; 84: 433-8.
-
(2002)
Biochimie
, vol.84
, pp. 433-438
-
-
Masaki, H.1
Ogawa, T.2
-
62
-
-
0025264325
-
The optional e
-
Levitz R, Chapman D, Amitsur M, Green R, Snyder L, Kaufmann G. The optional E. coli prr locus encodes a latent form of phage T4-induced anticodon nuclease. EMBO J 1990; 9: 1383-9.
-
(1990)
Coli Prr Locus Encodes A Latent Form of Phage T4-induced Anticodon Nuclease. EMBO J
, vol.9
, pp. 1383-1389
-
-
Levitz, R.1
Chapman, D.2
Amitsur, M.3
Green, R.4
Snyder, L.5
Kaufmann, G.6
-
63
-
-
29944432120
-
Starvation-induced cleavage of the tRNA anticodon loop in Tetrahymena thermophila
-
Lee SR, Collins K. Starvation-induced cleavage of the tRNA anticodon loop in Tetrahymena thermophila. J Biol Chem 2005; 280: 42744-9.
-
(2005)
J Biol Chem
, vol.280
, pp. 42744-42749
-
-
Lee, S.R.1
Collins, K.2
-
64
-
-
52949145277
-
TRNA cleavage is a conserved response to oxidative stress in eukaryotes
-
Thompson DM, Lu C, Green PJ, Parker R. tRNA cleavage is a conserved response to oxidative stress in eukaryotes. RNA 2008; 14: 2095-103.
-
(2008)
RNA
, vol.14
, pp. 2095-2103
-
-
Thompson, D.M.1
Lu, C.2
Green, P.J.3
Parker, R.4
-
65
-
-
65249129859
-
Angiogenin cleaves tRNA and promotes stress-induced translational repression
-
Yamasaki S, Ivanov P, Hu G-F, Anderson P. Angiogenin cleaves tRNA and promotes stress-induced translational repression. J Cell Biol 2009; 185: 35-42.
-
(2009)
J Cell Biol
, vol.185
, pp. 35-42
-
-
Yamasaki, S.1
Ivanov, P.2
Hu, G.-F.3
Anderson, P.4
-
66
-
-
65249152479
-
The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae
-
Thompson DM, Parker R. The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae. J Cell Biol 2009; 185: 43-50.
-
(2009)
J Cell Biol
, vol.185
, pp. 43-50
-
-
Thompson, D.M.1
Parker, R.2
-
67
-
-
58149498297
-
Stress induces tRNA cleavage by angiogenin in mammalian cells
-
Fu H, Feng J, Liu Q, Sun F, Tie Y, Zhu J, Xing R, Sun Z, Zheng X. Stress induces tRNA cleavage by angiogenin in mammalian cells. FEBS Lett 2009; 583: 437-42.
-
(2009)
FEBS Lett
, vol.583
, pp. 437-442
-
-
Fu, H.1
Feng, J.2
Liu, Q.3
Sun, F.4
Tie, Y.5
Zhu, J.6
Xing, R.7
Sun, Z.8
Zheng, X.9
-
68
-
-
84871107922
-
Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress
-
Saikia M, Krokowski D, Guan B-J, Ivanov P, Parisien M, Hu G-F, Anderson P, Pan T, Hatzoglou M. Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress. J Biol Chem 2012; 287: 42708-25.
-
(2012)
J Biol Chem
, vol.287
, pp. 42708-42725
-
-
Saikia, M.1
Krokowski, D.2
Guan, B.-J.3
Ivanov, P.4
Parisien, M.5
Hu, G.-F.6
Anderson, P.7
Pan, T.8
Hatzoglou, M.9
-
69
-
-
84873409537
-
Identification and functional characterization of tRNA-derived RNA fragments (tRFs) in respiratory syncytial virus infection
-
Wang Q, Lee I, Ren J, Ajay SS, Lee YS, Bao X. Identification and functional characterization of tRNA-derived RNA fragments (tRFs) in respiratory syncytial virus infection. Mol Ther 2013; 21: 368-79.
-
(2013)
Mol Ther
, vol.21
, pp. 368-379
-
-
Wang, Q.1
Lee, I.2
Ren, J.3
Ajay, S.S.4
Lee, Y.S.5
Bao, X.6
-
70
-
-
0000238273
-
Human placental ribonuclease inhibitor abolishes both angiogenic and ribonucleolytic activities of angiogenin
-
Shapiro R, Vallee BL. Human placental ribonuclease inhibitor abolishes both angiogenic and ribonucleolytic activities of angiogenin. Proc Natl Acad Sci USA 1987; 84: 2238-41.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 2238-2241
-
-
Shapiro, R.1
Vallee, B.L.2
-
71
-
-
13944277097
-
Angiogenin is translocated to the nucleus of HeLa cells and is involved in ribosomal RNA transcription and cell proliferation
-
Tsuji T, Sun Y, Kishimoto K, Olson KA, Liu S, Hirukawa S, Hu G-F. Angiogenin is translocated to the nucleus of HeLa cells and is involved in ribosomal RNA transcription and cell proliferation. Cancer Res 2005; 65: 1352-60.
-
(2005)
Cancer Res
, vol.65
, pp. 1352-1360
-
-
Tsuji, T.1
Sun, Y.2
Kishimoto, K.3
Olson, K.A.4
Liu, S.5
Hirukawa, S.6
Hu, G.-F.7
-
72
-
-
80051713296
-
Angiogenininduced tRNA fragments inhibit translation initiation
-
Ivanov P, Emara MM, Villen J, Gygi SP, Anderson P. Angiogenininduced tRNA fragments inhibit translation initiation. Mol Cell 2011; 43: 613-23.
-
(2011)
Mol Cell
, vol.43
, pp. 613-623
-
-
Ivanov, P.1
Emara, M.M.2
Villen, J.3
Gygi, S.P.4
Anderson, P.5
-
73
-
-
80053210307
-
Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C
-
Kato M, Chen X, Inukai S, Zhao H, Slack FJ. Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans. RNA 2011; 17: 1804-20.
-
(2011)
Elegans. RNA
, vol.17
, pp. 1804-1820
-
-
Kato, M.1
Chen, X.2
Inukai, S.3
Zhao, H.4
Slack, F.J.5
-
74
-
-
84868537584
-
A novel class of tRNA-derived small RNAs extremely enriched in mature mouse sperm
-
Peng H, Shi J, Zhang Y, Zhang H, Liao S, Li W, Lei L, Han C, Ning L, Cao Y, Zhou Q, Chen Q, Duan E. A novel class of tRNA-derived small RNAs extremely enriched in mature mouse sperm. Cell Res 2012; 22: 1609-12.
-
(2012)
Cell Res
, vol.22
, pp. 1609-1612
-
-
Peng, H.1
Shi, J.2
Zhang, Y.3
Zhang, H.4
Liao, S.5
Li, W.6
Lei, L.7
Han, C.8
Ning, L.9
Cao, Y.10
Zhou, Q.11
Chen, Q.12
Duan, E.13
-
75
-
-
77957306386
-
Regulatory RNAs derived from transfer RNA?
-
Pederson T. Regulatory RNAs derived from transfer RNA? RNA 2010; 16: 1865-9.
-
(2010)
RNA
, vol.16
, pp. 1865-1869
-
-
Pederson, T.1
-
76
-
-
77950202393
-
Human tRNA-derived small RNAs in the global regulation of RNA silencing
-
Haussecker D, Huang Y, Lau A, Parameswaran P, Fire AZ, Kay MA. Human tRNA-derived small RNAs in the global regulation of RNA silencing. RNA 2010; 16: 673-95.
-
(2010)
RNA
, vol.16
, pp. 673-695
-
-
Haussecker, D.1
Huang, Y.2
Lau, A.3
Parameswaran, P.4
Fire, A.Z.5
Kay, M.A.6
-
77
-
-
72749089855
-
A novel class of small RNAs: TRNA-derived RNA fragments (tRFs)
-
Lee YS, Shibata Y, Malhotra A, Dutta A. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev 2009; 23: 2639-49.
-
(2009)
Genes Dev
, vol.23
, pp. 2639-2649
-
-
Lee, Y.S.1
Shibata, Y.2
Malhotra, A.3
Dutta, A.4
-
78
-
-
71549169628
-
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
-
Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JWS, Green PJ, Barton GJ, Hutvagner G. Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA 2009; 15: 2147-60.
-
(2009)
RNA
, vol.15
, pp. 2147-2160
-
-
Cole, C.1
Sobala, A.2
Lu, C.3
Thatcher, S.R.4
Bowman, A.5
Brown, J.W.S.6
Green, P.J.7
Barton, G.J.8
Hutvagner, G.9
-
79
-
-
70449604918
-
Pyrosequencing of small non-coding RNAs in HIV-1 infected cells: Evidence for the processing of a viral-cellular doublestranded RNA hybrid
-
Yeung ML, Bennasser Y, Watashi K, Le S-Y, Houzet L, Jeang K-T. Pyrosequencing of small non-coding RNAs in HIV-1 infected cells: evidence for the processing of a viral-cellular doublestranded RNA hybrid. Nucleic Acids Res 2009; 37: 6575-86.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 6575-6586
-
-
Yeung, M.L.1
Bennasser, Y.2
Watashi, K.3
Le, S.-Y.4
Houzet, L.5
Jeang, K.-T.6
-
80
-
-
78650190427
-
A growth-essential Tetrahymena Piwi protein carries tRNA fragment cargo
-
Couvillion MT, Sachidanandam R, Collins K. A growth-essential Tetrahymena Piwi protein carries tRNA fragment cargo. Genes Dev 2010; 24: 2742-7.
-
(2010)
Genes Dev
, vol.24
, pp. 2742-2747
-
-
Couvillion, M.T.1
Sachidanandam, R.2
Collins, K.3
-
81
-
-
84870351999
-
A Tetrahymena Piwi bound to mature tRNA 3 fragments activates the exonuclease Xrn2 for RNA processing in the nucleus
-
Couvillion MT, Bounova G, Purdom E, Speed TP, Collins K. A Tetrahymena Piwi bound to mature tRNA 3 fragments activates the exonuclease Xrn2 for RNA processing in the nucleus. Mol Cell 2012; 48: 509-20.
-
(2012)
Mol Cell
, vol.48
, pp. 509-520
-
-
Couvillion, M.T.1
Bounova, G.2
Purdom, E.3
Speed, T.P.4
Collins, K.5
-
82
-
-
84857066577
-
Metatranscriptomic analysis of microbes in an ocean-front deep subsurface hot spring reveals novel small RNAs and type-specific tRNA degradation
-
Murakami S, Fujishima K, Tomita M, Kanai A. Metatranscriptomic analysis of microbes in an ocean-front deep subsurface hot spring reveals novel small RNAs and type-specific tRNA degradation. Appl Environ Microbiol 2011; 78: 1015-22.
-
(2011)
Appl Environ Microbiol
, vol.78
, pp. 1015-1022
-
-
Murakami, S.1
Fujishima, K.2
Tomita, M.3
Kanai, A.4
-
83
-
-
38649140699
-
The many applications of acid urea polyacrylamide gel electrophoresis to studies of tRNAs and aminoacyl-tRNA synthetases
-
Köhrer C, Rajbhandary UL. The many applications of acid urea polyacrylamide gel electrophoresis to studies of tRNAs and aminoacyl-tRNA synthetases. Methods 2008; 44: 129-38.
-
(2008)
Methods
, vol.44
, pp. 129-129
-
-
Köhrer, C.1
Rajbhandary, U.L.2
|