MicroRNA profile comparison of the corneal endothelia of young and old mice: Implications for senescence of the corneal endothelium

Molecular Vision

Volumn 19, Issue , 2013, Pages 1815-1825

  Zhao, Xiaowen ^a   Huang, Yusen ^a   Wang, Ye ^a   Chen, Peng ^a   Yu, Yang ^a   Song, Zicheng ^a  

^a SHANDONG EYE INSTITUTE   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA; MICRORNA 181A; MICRORNA 181D; MICRORNA 182; MICRORNA 183; MICRORNA 190; MICRORNA 29C; MICRORNA 31; MICRORNA 32; MICRORNA 34C; MICRORNA 455; MICRORNA 695; MICRORNA 706; MICRORNA 744; NEUROTROPHIN; PHOSPHATIDYLINOSITOL; TRANSFORMING GROWTH FACTOR BETA; UNCLASSIFIED DRUG;

3' UNTRANSLATED REGION; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; CORNEA CELL; ENDOTHELIUM; GENE TARGETING; HUMAN; MICROARRAY ANALYSIS; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN PHOSPHORYLATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; RNA EXTRACTION; SENESCENCE; SIGNAL TRANSDUCTION; SYNAPSE;

AGING; ANIMALS; CELL AGING; COMPUTATIONAL BIOLOGY; ENDOTHELIUM, CORNEAL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE REGULATORY NETWORKS; MICE; MICE, INBRED BALB C; MICRORNAS; MOLECULAR SEQUENCE ANNOTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRODUCIBILITY OF RESULTS;

EID: 84881502276     PISSN: None     EISSN: 10900535     Source Type: Journal    
DOI: None     Document Type: Article

References (45)

1. Fischbarg J, Maurice DM. An update on corneal hydration control. Exp Eye Res 2004; 78:537-41. [PMID: 15106932].
2. Joyce NC. Cell cycle status in human corneal endothelium. Exp Eye Res 2005; 81:629-38. [PMID: 16054624].
3. Laule A, Cable MK, Hoffman CE, Hanna C. Endothelial cell population changes of human cornea during life. Arch Ophthalmol 1978; 96:2031-5. [PMID: 718491].
4. Ikebe H, Takamatsu T, Itoi M, Fujita S. Cytofluorometric nuclear DNA determinations on human corneal endothelial cells. Exp Eye Res 1984; 39:497-504. [PMID: 6499962].
5. Hollingsworth J, Perez-Gomez I, Mutalib HA, Efron N. A population study of the normal cornea using an in vivo, slit-scanning confocal microscope. Optom Vis Sci 2001; 78:706-11. [PMID: 11700964].
6. Song Z, Wang Y, Xie L, Zang X, Yin H. Expression of senescence-related genes in human corneal endothelial cells. Mol Vis 2008; 14:161-70. [PMID: 18334933].
7. Xiao X, Wang Y, Gong H, Chen P, Xie L. Molecular evidence of senescence in corneal endothelial cells of senescence-accelerated mice. Mol Vis 2009; 15:747-61. [PMID: 19381346].
8. Krishnamurthy J, Torrice C, Ramsey MR, Kovalev GI, Al-Regaiey K, Su L, Sharpless NE. Ink4a/Arf expression is a biomarker of aging. J Clin Invest 2004; 114:1299-307. [PMID: 15520862].
9. Ressler S, Bartkova J, Niederegger H, Bartek J, Scharffetter-Kochanek K, Jansen-Durr P, Wlaschek M. p16INK4A is a robust in vivo biomarker of cellular aging in human skin. Aging Cell 2006; 5:379-89. [PMID: 16911562].
10. Attema JL, Pronk CJ, Norddahl GL, Nygren JM, Bryder D. Hematopoietic stem cell ageing is uncoupled from p16 INK4A-mediated senescence. Oncogene 2009; 28:2238-43. [PMID: 19398954].
11. Lavker RM, Jia Y, Ryan DG. The tiny world of microRNAs in the cross hairs of the mammalian eye. Hum Genomics 2009; 3:332-48. [PMID: 19706364].
12. Dalmasso G, Nguyen HT, Yan Y, Laroui H, Srinivasan S, Sitaraman SV, Merlin D. MicroRNAs determine human intestinal epithelial cell fate. Differentiation 2010; 80:147-54. [PMID: 20638171].
13. Zamore PD, Haley B. Ribo-gnome: the big world of small RNAs. Science 2005; 309:1519-24. [PMID: 16141061].
14. Shyu AB, Wilkinson MF, van Hoof A. Messenger RNA regulation: to translate or to degrade. EMBO J 2008; 27:471-81. [PMID: 18256698].
15. Bae JS, Kim JH, Pasaje CF, Cheong HS, Lee TH, Koh IS, Lee HS, Kim YJ, Shin HD. Association study of genetic variations in microRNAs with the risk of hepatitis B-related liver diseases. Dig Liver Dis 2012; 44:849-54. [PMID: 22658643].
16. Karali M, Peluso I, Gennarino VA, Bilio M, Verde R, Lago G, Dolle P, Banfi S. miRNeye: a microRNA expression atlas of the mouse eye. BMC Genomics 2010; 11:715 -[PMID: 21171988].
17. Wu C, Lin H, Wang Q, Chen W, Luo H, Zhang H. Discrepant expression of microRNAs in transparent and cataractous human lenses. Invest Ophthalmol Vis Sci 2012; 53:3906-12. [PMID: 22562507].
18. Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus KC, Stoffel M, Rajewsky N. Combinatorial microRNA target predictions. Nat Genet 2005; 37:495-500. [PMID: 15806104].
19. John B, Enright AJ, Aravin A, Tuschl T, Sander C, Marks DS. Human MicroRNA targets. PLoS Biol 2004; 2:e363 -[PMID: 15502875].
20. Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 2007; 27:91-105. [PMID: 17612493].
21. Dalmasso G, Nguyen HT, Yan Y, Laroui H, Srinivasan S, Sitaraman SV, Merlin D. MicroRNAs determine human intestinal epithelial cell fate. Differentiation 2010; 80:147-54. [PMID: 20638171].
22. Hooper SD, Bork P. Medusa: a simple tool for interaction graph analysis. Bioinformatics 2005; 21:4432-3. [PMID: 16188923].
23. Huang da W., Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009; 4:44-57. [PMID: 19131956].
24. Wang Y, Zang X, Chen P. High expression of p16INK4a and low expression of Bmi1 are associated with endothelial cellular senescence in the human cornea. Mol Vis 2012; 18:803-15. [PMID: 22509111].
25. Sheerin AN, Smith SK, Jennert-Burston K, Brook AJ, Allen MC, Ibrahim B, Jones D, Wallis C, Engelmann K, Rhys-Williams W, Faragher RG, Kipling D. Characterization of cellular senescence mechanisms in human corneal endothelial cells. Aging Cell 2012; 11:234-40. [PMID: 22128747].
26. Dhahbi JM, Atamna H, Boffelli D, Magis W, Spindler SR, Martin DI. Deep sequencing reveals novel microRNAs and regulation of microRNA expression during cell senescence. PLoS ONE 2011; 6:e20509 -[PMID: 21637828].
27. Liu FJ, Wen T, Liu L. MicroRNAs as a novel cellular senescence regulator. Ageing Res Rev 2012; 11:41-50. [PMID: 21689787].
28. Mraz M, Malinova K, Kotaskova J, Pavlova S, Tichy B, Malcikova J, Stano Kozubik K, Smardova J, Brychtova Y, Doubek M, Trbusek M, Mayer J, Pospisilova S. miR-34a, miR-29c and miR-17-5p are downregulated in CLL patients with TP53 abnormalities. Leukemia 2009; 23:1159-63. [PMID: 19158830].
29. Pogribny IP, Starlard-Davenport A, Tryndyak VP, Han T, Ross SA, Rusyn I, Beland FA. Difference in expression of hepatic microRNAs miR-29c, miR-34a, miR-155, and miR-200b is associated with strain-specific susceptibility to dietary nonalcoholic steatohepatitis in mice. Lab Invest 2010; 90:1437-46. [PMID: 20548288].
30. Ding DP, Chen ZL, Zhao XH, Wang JW, Sun J, Wang Z, Tan FW, Tan XG, Li BZ, Zhou F, Shao K, Li N, Qiu B, He J. miR-29c induces cell cycle arrest in esophageal squamous cell carcinoma by modulating cyclin E expression. Carcinogenesis 2011; 32:1025-32. [PMID: 21551130].
31. Wang CM, Wang Y, Fan CG, Xu FF, Sun WS, Liu YG, Jia JH. miR-29c targets TNFAIP3, inhibits cell proliferation and induces apoptosis in hepatitis B virus-related hepatocellular carcinoma. Biochem Biophys Res Commun 2011; 411:586-92. [PMID: 21763284].
32. Zong Y, Wang H, Dong W, Quan X, Zhu H, Xu Y, Huang L, Ma C, Qin C. miR-29c regulates BACE1 protein expression. Brain Res 2011; 1395:108-15. [PMID: 21565331].
33. Corney DC, Flesken-Nikitin A, Godwin AK, Wang W, Nikitin AY. MicroRNA-34b and MicroRNA-34c are targets of p53 and cooperate in control of cell proliferation and adhesion-independent growth. Cancer Res 2007; 67:8433-8. [PMID: 17823410].
34. Zhu G, Chai J, Ma L, Duan H, Zhang H. Downregulated microRNA-32 expression induced by high glucose inhibits cell cycle progression via PTEN upregulation and Akt inactivation in bone marrow-derived mesenchymal stem cells. Biochem Biophys Res Commun 2013; 433:526-31. [PMID: 23524257].
35. Shin D, Howng SY, Ptacek LJ, Fu YH. miR-32 and its target SLC45A3 regulate the lipid metabolism of oligodendrocytes and myelin. Neuroscience 2012; 213:29-37. [PMID: 22521588].
36. Tang H, Bian Y, Tu C, Wang Z, Yu Z, Liu Q, Xu G, Wu M, Li G. The miR-183/96/182 cluster regulates oxidative apoptosis and sensitizes cells to chemotherapy in gliomas. Curr Cancer Drug Targets 2013; 13:221-31. [PMID: 23252827].
37. Lodrini M, Oehme I, Schroeder C, Milde T, Schier MC, Kopp-Schneider A, Schulte JH, Fischer M, De Preter K, Pattyn F, Castoldi M, Muckenthaler MU, Kulozik AE, Westermann F, Witt O, Deubzer HE. MYCN and HDAC2 cooperate to repress miR-183 signaling in neuroblastoma. Nucleic Acids Res 2013; 41:6018-33. [PMID: 23625969].
38. Peng H, Kaplan N, Hamanaka RB, Katsnelson J, Blatt H, Yang W, Hao L, Bryar PJ, Johnson RS, Getsios S, Chandel NS, Lavker RM. microRNA-31/factor-inhibiting hypoxia-inducible factor 1 nexus regulates keratinocyte differentiation. Proc Natl Acad Sci USA 2012; 109:14030-4. [PMID: 22891326].
39. Silber J, Hashizume R, Felix T, Hariono S, Yu M, Berger MS, Huse JT, Vandenberg SR, James CD, Hodgson JG, Gupta N. Expression of miR-124 inhibits growth of medulloblastoma cells. Neuro-oncol 2013; 15:83-90. [PMID: 23172372].
40. Huang TC, Chang HY, Chen CY, Wu PY, Lee H, Liao YF, Hsu WM, Huang HC, Juan HF. Silencing of miR-124 induces neuroblastoma SK-N-SH cell differentiation, cell cycle arrest and apoptosis through promoting AHR. FEBS Lett 2011; 585:3582-6. [PMID: 22024478].
41. Lang Q, Ling C. MiR-124 suppresses cell proliferation in hepatocellular carcinoma by targeting PIK3CA. Biochem Biophys Res Commun 2012; 426:247-52. [PMID: 22940133].
42. Liu K, Liu Y, Mo W, Qiu R, Wang X, Wu JY, He R. MiR-124 regulates early neurogenesis in the optic vesicle and forebrain, targeting NeuroD1. Nucleic Acids Res 2011; 39:2869-79. [PMID: 21131276].
43. Koh SW. Corneal endothelial autocrine trophic factor VIP in a mechanism-based strategy to enhance human donor cornea preservation for transplantation. Exp Eye Res 2012; 95:48-53. [PMID: 22036689].
44. Koh SW, Cheng J, Dodson RM, Ku CY, Abbondandolo CJ. VIP down-regulates the inflammatory potential and promotes survival of dying (neural crest-derived) corneal endothelial cells ex vivo: necrosis to apoptosis switch and up-regulation of Bcl-2 and N-cadherin. J Neurochem 2009; 109:792-806. [PMID: 19250342].
45. Sornelli F, Lambiase A, Mantelli F, Aloe L. NGF and NGF-receptor expression of cultured immortalized human corneal endothelial cells. Mol Vis 2010; 16:1439-47. [PMID: 20680101].