Increased alkalotolerant and thermostable ribonuclease (RNase) production from alkaliphilic Streptomyces sp. M49-1 by optimizing the growth conditions using response surface methodology

World Journal of Microbiology and Biotechnology

Volumn 29, Issue 9, 2013, Pages 1625-1633

  Demir, Tuǧçe ^a   Gübe, Özkan ^a   Yücel, Mesut ^a   Hameş Kocabaş, E Esin ^a  

^a EGE UNIVERSITY   (Turkey)

Author keywords

Alkalotolerant and thermostable RNase; Central composite design; Optimization; Response surface methodology; Streptomyces

Indexed keywords

ALKALOTOLERANT; CENTRAL COMPOSITE DESIGNS; FERMENTATION OPTIMIZATIONS; FERMENTATION VARIABLES; PHARMACEUTICAL INDUSTRY; RESPONSE SURFACE METHODOLOGY; STATISTICAL OPTIMIZATION; STREPTOMYCES;

BACTERIA; DESIGN; ENZYME ACTIVITY; EXPERIMENTS; FERMENTATION; GLUCOSE; SURFACE PROPERTIES; YEAST;

OPTIMIZATION;

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); STREPTOMYCES; STREPTOMYCES SP.;

CARBON; NITROGEN; RIBONUCLEASE; RNA 16S;

ACTINOBACTERIA; ARTICLE; BIOSYNTHESIS; CHEMISTRY; CLASSIFICATION; CULTURE MEDIUM; ENZYME STABILITY; ENZYMOLOGY; FERMENTATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PH; STREPTOMYCES; TEMPERATURE;

ACTINOBACTERIA; CARBON; CULTURE MEDIA; ENZYME STABILITY; FERMENTATION; HYDROGEN-ION CONCENTRATION; INDUSTRIAL MICROBIOLOGY; MOLECULAR SEQUENCE DATA; NITROGEN; RIBONUCLEASES; RNA, RIBOSOMAL, 16S; STREPTOMYCES; TEMPERATURE;

EID: 84881372618     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-013-1325-1     Document Type: Article

References (28)

1. Arnold U (2008) Aspects of the cytotoxic action of ribonucleases. Curr Pharm Biotechnol 9: 161-168.
2. Chacko R, Deshpande M, Shankar V (1996) Extracellular ribonuclease production by Rhizopus stolonifer: influence of metal ions. Curr Microbiol 32: 246-251.
3. Cheng S-C, Ogrydziak DM (1986) Extracellular RNase produced by Yarrowia lipolytica. J Bacteriol 168: 581-589.
4. Elibol M (2004) Optimization of medium composition for actinorhodin production by Streptomyces coelicolor A3(2) with response surface methodology. Process Biochem 39: 1057-1062.
5. Fang EF, Ng TB (2011) Ribonucleases of different origins with a wide spectrum of medicinal applications. Biochim Biophys Acta 1815: 65-74.
6. Gomes E, De Silva R, Serzedello A (1998) Ribonuclease production by Aspergillus species. Rev Microbiol 29: 187-192.
7. Gundampati RK, Debnath M (2009) Extracellular ribonuclease from Aspergillus niger: process optimization for production. Int J Eng Tech (IJET) 1: 317-320.
8. Gundampati RK, Sharma A, Kumari M, Debnath M (2011) Extracellular poly (A) specific ribonuclease from Aspergillus niger ATCC 26550: purification, biochemical, and spectroscopic studies. Process Biochem 46: 135-141.
9. Haaland PD (1989) Statistical problem solving. In: Haaland PD (ed) Experimental design in biotechnology. Marcel Dekker Incorporation, New York, pp 1-18.
10. Hebert EJ, Grimsley GR, Hartley RW, Horn G, Schell D, Garcia S, Both V, Sevcik J, Pace CN (1997) Purification of ribonucleases Sa, Sa2, and Sa3 after expression in Escherichia coli. Protein Expr Purif 11: 162-168.
11. Hlinkova V, Urbanikova L, Krajcikova D, Sevcik J (2001) Purification, crystallization and preliminary x-ray analysis of two crystal forms of ribonuclease Sa3. Acta Cryst D57: 737-739.
12. Hole RC, Singhal RS, Melo JS, D'Souza SF (2004) A rapid plate screening technique for extracellular ribonuclease producing strains. BARC Newsletter 249: 91-97.
13. Ilinskaya ON, Dreyer F, Mitkevich VA, Shaw KL, Pace CN, Makarov AA (2002) Changing the net charge from negative to positive makes ribonuclease Sa cytotoxic. Protein Sci 11: 2522-2525.
14. Joshi AP, Deshmukh SS (2011) Streptomyces nucleases. Crit Rev Microbiol 37: 227-236.
15. Kutzner HJ (1981) The family Streptomycetaceae. In: Starr MP, Stolp H, Trüper HG, Balons A, Schlegel HG (eds) The Prokaryotes-A handbook 1 on habitats, isolation and identification of bacteria. Springer, Berlin, pp 2028-2090.
16. Pace CN, Hebert EJ, Shaw KL, Schell D, Botg V, Krajcikova D, Sevcik J, Wilson KS, Dauter Z, Hartley RW, Grimsley GR (1998) Conformational stability and thermodynamics of folding of ribonucleases Sa, Sa2 and Sa3. J Mol Biol 279: 271-286.
17. Patil NS, Deshmukh SS, Shankar V (2005) Extracellular nuclease from a thermophile, Streptomyces thermonitrificans: production, purification and partial characterization of-double strand preferential-deoxyribonuclease activity. Process Biochem 40: 1271-1278.
18. Reddy LG, Shankar V (1993) Immobilized nucleases. Crit Rev Biotechnol 13: 255-273.
19. Sevcik J, Urbanikova L, Leland PA, Raines RT (2002) X-ray structure of two crystalline forms of a Streptomycete ribonuclease with cytotoxic activity. J Biol Chem 277: 47325-47330.
20. Shaw KL, Grimsley GR, Yakovlev GI, Makarov AA, Pace CN (2001) The effect of net charge on the solubility, activity, and stability of ribonuclease Sa. Protein Sci 10: 1206-1215.
21. Trefethen JM, Pace CN, Scholtz JM, Brem DN (2005) Charge-charge interactions in the denatured state influence the folding kinetics of ribonuclease Sa. Protein Sci 14: 1934-1938.
22. Uchida T, Egami F (1967) Ribonuclease T1 from taka-diastase. Methods Enzymol 12(Part A): 229-239.
23. Voss C, Lindau D, Flaschel E (2006) Production of recombinant RNase Ba and its application in downstream processing of plasmid DNA for pharmaceutical use. Biotechnol Prog 22: 737-744.
24. Xiong Y-H, Liu J-Z, Song H-Y, Ji L-N (2004) Enhanced production of extracellular ribonuclease from Aspergillus niger by optimization of culture conditions using response surface methodology. Biochem Eng J 21: 27-32.
25. Yang H-H, Thayer DW, Yang SF (1979) Reduction of endogenous nucleic acid in a single-cell protein. Appl Environ Microbiol 38: 143-147.
26. Zhong L, Srirangan K, Scharer J, Moo-Young M, Fenner D, Crossley L, Honeyman CH, Suen S, Chou CP (2011) Developing an RNase -free bioprocess to produce pharmaceutical-grade plasmid DNA using selective precipitation and membrane chromatography. Sep Purif Technol 83: 121-129.
27. Zhou W-W, Niu T-G (2009) Purification and some properties of an extracellular ribonuclease with antiviral activity against tobacco mosaic virus from Bacillus cereus. Biotechnol Lett 31: 101-105.
28. Zhou W-W, He Y-L, Niu T-G, Zhong J-J (2009) Optimization of fermentation conditions for production of anti-TMV extracellular ribonuclease by Bacillus cereus using response surface methodology. Bioprocess Biosyst Eng 33: 657-663.