Proteomic analysis of nuclei dissected from fixed rat brain tissue using expression microdissection

Analytical Chemistry

Volumn 85, Issue 15, 2013, Pages 7139-7145

  Blackler, A R ^a   Morgan, N Y ^b   Gao, B ^c   Olano, L R ^d   Armani, M D ^a   Romantseva, E ^b   Kakareka, J W ^e   Bonner, R F ^f   Mukherjee, S ^a   Xiao, B ^e   Tran, K ^f   Pohida, T J ^e   Emmert Buck, M R ^a   Tangrea, M A ^a   Markey, S P ^c  

^a NATIONAL CANCER INSTITUTE   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

^c NATIONAL INSTITUTE OF MENTAL HEALTH   (United States)

^d NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^e NATIONAL INSTITUTES OF HEALTH   (United States)

^f EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ETHYLENE VINYL ACETATES; HISTOLOGICAL SECTION; MULTIPLE REACTION MONITORING; NUCLEAR STRUCTURE; PROTEOMIC ANALYSIS; PROTEOMIC STUDIES; SUBCELLULAR STRUCTURE; TRANSIENT HEATING;

CELL CULTURE; CELL PROLIFERATION; LIGHT SOURCES; MASS SPECTROMETRY; MICRODISSECTION; MOLECULAR BIOLOGY; POLYMETHYL METHACRYLATES; SCANNING ELECTRON MICROSCOPY; TISSUE;

PROTEINS;

FORMALDEHYDE; PARAFFIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; BRAIN; CELL NUCLEUS; CYTOLOGY; MASS SPECTROMETRY; METABOLISM; METHODOLOGY; MICRODISSECTION; MOLECULAR GENETICS; PRECIPITATION; PROTEIN DEGRADATION; PROTEOMICS; RAT; TISSUE FIXATION;

AMINO ACID SEQUENCE; ANIMALS; BRAIN; CELL NUCLEUS; CHEMICAL PRECIPITATION; FORMALDEHYDE; MASS SPECTROMETRY; MICRODISSECTION; MOLECULAR SEQUENCE DATA; PARAFFIN EMBEDDING; PROTEOLYSIS; PROTEOMICS; RATS; TISSUE FIXATION;

EID: 84881364985     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac400691k     Document Type: Article

References (29)

1. Emmert-Buck, M. R.; Bonner, R. F.; Smith, P. D.; Chuaqui, R. F.; Zhuang, Z.; Goldstein, S. R.; Weiss, R. A.; Liotta, L. A. Science 1996, 274, 998-1001
2. Yan, W.; Shih, J. H.; Rodriguez-Canales, J.; Tangrea, M. A.; Ylaya, K.; Hipp, J.; Player, A.; Hu, N.; Goldstein, A. M.; Taylor, P. R.; Emmert-Buck, M. R.; Erickson, H. S. BMC Res. Notes 2012, 5, 73
3. Ly, L.; Barnett, M. H.; Zheng, Y. Z.; Gulati, T.; Prineas, J. W.; Crossett, B. J. Proteome Res. 2011, 10, 4855-4868
4. Arentz, G.; Chataway, T.; Price, T. J.; Izwan, Z.; Hardi, G.; Cummins, A. G.; Hardingham, J. E. Clin. Proteomics 2011, 8, 16
5. Liu, N. Q.; Braakman, R. B.; Stingl, C.; Luider, T. M.; Martens, J. W.; Foekens, J. A.; Umar, A. J. Mammary Gland Biol. Neoplasia 2012, 17, 155-164
6. Bateman, N. W.; Sun, M.; Bhargava, R.; Hood, B. L.; Darfler, M. M.; Kovatich, A. J.; Hooke, J. A.; Krizman, D. B.; Conrads, T. P. J. Proteome Res. 2011, 10, 1323-1332
7. Besson, D.; Pavageau, A. H.; Valo, I.; Bourreau, A.; Bélanger, A.; Eymerit-Morin, C.; Moulière, A.; Chassevent, A.; Boisdron-Celle, M.; Morel, A.; Solassol, J.; Campone, M.; Gamelin, E.; Barré, B.; Coqueret, O.; Guette, C. Mol. Cell. Proteomics 2011, 10, M111.009712
8. Lu, Q.; Murugesan, N.; Macdonald, J. A.; Wu, S. L.; Pachter, J. S.; Hancock, W. S. Electrophoresis 2008, 29, 2689-2695
9. Goldstein, S. R.; McQueen, P. G.; Bonner, R. F. Appl. Opt. 1998, 37, 7378-7391
10. Tangrea, M. A.; Chuaqui, R. F.; Gillespie, J. W.; Ahram, M.; Gannot, G.; Wallis, B. S.; Best, C. J.; Linehan, W. M.; Liotta, L. A.; Pohida, T. J.; Bonner, R. F.; Emmert-Buck, M. R. Diagn. Mol. Pathol. 2004, 13, 207-212
11. Grover, A. C.; Tangrea, M. A.; Woodson, K. G.; Wallis, B. S.; Hanson, J. C.; Chuaqui, R. F.; Gillespie, J. W.; Erickson, H. S.; Bonner, R. F.; Pohida, T. J.; Emmert-Buck, M. R.; Libutti, S. K. J. Transl. Med. 2006, 4, 13
12. Hanson, J. A.; Gillespie, J. W.; Grover, A.; Tangrea, M. A.; Chuaqui, R. F.; Emmert-Buck, M. R.; Tangrea, J. A.; Libutti, S. K.; Linehan, W. M.; Woodson, K. G. J. Natl. Cancer Instit. 2006, 98, 255-261
13. Hanson, J. C.; Tangrea, M. A.; Kim, S.; Armani, M. D.; Pohida, T. J.; Bonner, R. F.; Rodriguez-Canales, J.; Emmert-Buck, M. R. Nat. Protoc. 2011, 6, 457-467
14. Wessel, D.; Flügge, U. I. Anal. Biochem. 1984, 138, 141-143
15. Keller, A.; Nesvizhskii, A. I.; Kolker, E.; Aebersold, R. Anal. Chem. 2002, 74, 5383-5392
16. Nesvizhskii, A. I.; Keller, A.; Kolker, E.; Aebersold, R. Anal. Chem. 2003, 75, 4646-4658
17. Consortium, U. Nucleic Acids Res. 2012, 40, D71-D75
18. MacLean, B.; Tomazela, D. M.; Shulman, N.; Chambers, M.; Finney, G. L.; Frewen, B.; Kern, R.; Tabb, D. L.; Liebler, D. C.; MacCoss, M. J. Bioinformatics 2010, 26, 966-968
19. Hockmuth, C.; Fujioka, A.; Terai, K.; Itoh, R. E.; Aoki, K.; Nakamura, T.; Kuroda, S.; Nishida, E.; Matsuda, M. J. Biol. Chem. 2006, 281, 8917-8926
20. Tangrea, M. A.; Mukherjee, S.; Gao, B.; Markey, S. P.; Du, Q.; Armani, M.; Kreitman, M. S.; Rosenberg, A. M.; Wallis, B. S.; Eberle, F. C.; Duncan, F. C.; Hanson, J. C.; Chuaqui, R. F.; Rodriguez-Canales, J.; Emmert-Buck, M. R. J. Histochem. Cytochem. 2011, 59, 591-600
21. Liao, L.; McClatchy, D. B.; Park, S. K.; Xu, T.; Lu, B.; Yates, J. R., 3rd. J. Proteome Res. 2008, 7, 4743-4755
22. Desrivieres, S.; Kuhn, K.; Muller, J.; Glaser, M.; Laria, N. C.; Korder, J.; Sonnentag, M.; Neumann, T.; Schwarz, J.; Schafer, J.; Hamon, C.; Groner, B.; Prinz, T. Proteomics 2007, 7, 2019-2037
23. Bennetzen, M. V.; Larsen, D. H.; Bunkenborg, J.; Bartek, J.; Lukas, J.; Andersen, J. S. Mol. Cell. Proteomics 2010, 9, 1314-1323
24. Alkhas, A.; Hood, B. L.; Oliver, K.; Teng, P. N.; Oliver, J.; Mitchell, D.; Hamilton, C. A.; Maxwell, G. L.; Conrads, T. P. J. Proteome Res. 2011, 10, 5264-5271
25. Fountzilas, G.; Dafni, U.; Bobos, M.; Batistatou, A.; Kotoula, V.; Trihia, H.; Malamou-Mitsi, V.; Miliaras, S.; Chrisafi, S.; Papadopoulos, S.; Sotiropoulou, M.; Filippidis, T.; Gogas, H.; Koletsa, T.; Bafaloukos, D.; Televantou, D.; Kalogeras, K. T.; Pectasides, D.; Skarlos, D. V.; Koutras, A.; Dimopoulos, M. A. PLoS One 2012, 7, e37946
26. Fowler, C. B.; O'Leary, T. J.; Mason, J. T. Methods Mol. Biol. 2011, 724, 281-295
27. Sprung, R. W.; Martinez, M. A.; Carpenter, K. L.; Ham, A.-J.; Washington, M. K.; Arteaga, C.; Sanders, M.; Liebler, D. C. J. Proteome Res. 2012, 11, 3498-3505
28. Scicchitano, M. S.; Dalmas, D. A.; Boyce, R. W.; Thomas, H. C.; Frazier, K. S. J. Histochem. Cytochem. 2009, 57, 849-860
29. Sprung, R. W., Jr.; Brock, J. W.; Tanksley, J. P.; Li, M.; Washington, M. K.; Slebos, R. J.; Liebler, D. C. Mol. Cell. Proteomics 2009, 8, 1988-1998