-
1
-
-
67650523623
-
Identification of a putative protein profile associated with tamoxifen therapy resistance in breast cancer
-
Umar A, Kang H, Timmermans AM, Look MP, Meijer-van Gelder ME, den Bakker MA, et al. Identification of a putative protein profile associated with tamoxifen therapy resistance in breast cancer. Mol Cell Proteomics. 2009;8(6):1278-94.
-
(2009)
Mol Cell Proteomics
, vol.8
, Issue.6
, pp. 1278-1294
-
-
Umar, A.1
Kang, H.2
Timmermans, A.M.3
Look, M.P.4
Meijer-Van Gelder, M.E.5
Den Bakker, M.A.6
-
2
-
-
0030575911
-
Laser capture microdissection
-
DOI 10.1126/science.274.5289.998
-
Emmert-Buck MR, Bonner RF, Smith PD, Chuaqui RF, Zhuang Z, Goldstein SR, et al. Laser capture microdissection. Science. 1996;274(5289):998-1001. (Pubitemid 26398425)
-
(1996)
Science
, vol.274
, Issue.5289
, pp. 998-1001
-
-
Emmert-Buck, M.R.1
Bonner, R.F.2
Smith, P.D.3
Chuaqui, R.F.4
Zhuang, Z.5
Goldstein, S.R.6
Weiss, R.A.7
Liotta, L.A.8
-
3
-
-
34548707114
-
Laser-capture microdissection
-
Espina V, Wulfkuhle JD, Calvert VS, VanMeter A, Zhou W, Coukos G, et al. Laser-capture microdissection. Nat Protoc. 2006;1(2):586-603.
-
(2006)
Nat Protoc
, vol.1
, Issue.2
, pp. 586-603
-
-
Espina, V.1
Wulfkuhle, J.D.2
Calvert, V.S.3
VanMeter, A.4
Zhou, W.5
Coukos, G.6
-
4
-
-
33846682587
-
NanoLC-FT-ICR MS improves proteome coverage attainable for 3000 laser-microdissected breast carcinoma cells
-
DOI 10.1002/pmic.200600293
-
Umar A, Luider TM, Foekens JA, Pasa-Tolic L. NanoLC-FT-ICR MS improves proteome coverage attainable for approximately 3000 laser-microdissected breast carcinoma cells. Proteomics. 2007;7(2):323-9. (Pubitemid 46188242)
-
(2007)
Proteomics
, vol.7
, Issue.2
, pp. 323-329
-
-
Umar, A.1
Luider, T.M.2
Foekens, J.A.3
Pasa-Tolic, L.4
-
5
-
-
84861341467
-
Optimized nLC-MS workflow for laser capture microdissected breast cancer tissue
-
doi:10.1016/j.jprot.2012.01.022
-
Braakman RB, Tilanus-Linthorst MM, Liu NQ, Stingl C, Dekker LJ, Luider TM, et al. Optimized nLC-MS workflow for laser capture microdissected breast cancer tissue. J Proteom. 2012. doi:10.1016/j.jprot.2012.01.022.
-
(2012)
J Proteom.
-
-
Braakman, R.B.1
Tilanus-Linthorst, M.M.2
Liu, N.Q.3
Stingl, C.4
Dekker, L.J.5
Luider, T.M.6
-
6
-
-
22044435256
-
Method optimisation for peptide profiling of microdissected breast carcinoma tissue by matrix-assisted laser desorption/ionisation-time of flight and matrix-assisted laser desorption/ionisation-time of flight/time of flight-mass spectrometry
-
DOI 10.1002/pmic.200400128
-
Umar A, Dalebout JC, Timmermans AM, Foekens JA, Luider TM. Method optimisation for peptide profiling of microdissected breast carcinoma tissue by matrix-assisted laser desorption/ionisationtime of flight and matrix-assisted laser desorption/ionisation-time of flight/time of flight-mass spectrometry. Proteomics. 2005;5 (10):2680-8. (Pubitemid 40966495)
-
(2005)
Proteomics
, vol.5
, Issue.10
, pp. 2680-2688
-
-
Umar, A.1
Dalebout, J.C.H.2
Timmermans, A.M.3
Foekens, J.A.4
Luider, T.M.5
-
7
-
-
79960942452
-
Laser capture microdissection applications in breast cancer proteomics
-
Braakman RB, Luider TM, Martens JW, Foekens JA, Umar A. Laser capture microdissection applications in breast cancer proteomics. Methods Mol Biol. 2011;755:143-54.
-
(2011)
Methods Mol Biol
, vol.755
, pp. 143-154
-
-
Braakman, R.B.1
Luider, T.M.2
Martens, J.W.3
Foekens, J.A.4
Umar, A.5
-
8
-
-
79951540395
-
Reproducibility of protein identification of selected cell types in Barrett's esophagus analyzed by combining laser-capture microdissection and mass spectrometry
-
Stingl C, van Vilsteren FG, Guzel C, Ten Kate FJ, Visser M, Krishnadath KK, et al. Reproducibility of protein identification of selected cell types in Barrett's esophagus analyzed by combining laser-capture microdissection and mass spectrometry. J Proteome Res. 2011;10(1):288-98.
-
(2011)
J Proteome Res
, vol.10
, Issue.1
, pp. 288-298
-
-
Stingl, C.1
Van Vilsteren, F.G.2
Guzel, C.3
Ten Kate, F.J.4
Visser, M.5
Krishnadath, K.K.6
-
9
-
-
57449099865
-
Max quant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox J,MannM. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol. 2008;26(12):1367-72.
-
(2008)
Nat Biotechnol.
, vol.26
, Issue.12
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
10
-
-
79953701087
-
Andromeda -A peptide search engine integrated into the Max-Quant environment
-
Cox J, Neuhauser N, Michalski A, Scheltema RA, Olsen JV, Mann M. Andromeda -A peptide search engine integrated into the Max-Quant environment. J Proteome Res. 2011;10(4):1794-805.
-
(2011)
J Proteome Res
, vol.10
, Issue.4
, pp. 1794-1805
-
-
Cox, J.1
Neuhauser, N.2
Michalski, A.3
Scheltema, R.A.4
Olsen, J.V.5
Mann, M.6
-
11
-
-
46249116675
-
DAnTE: A statistical tool for quantitative analysis of -omics data
-
DOI 10.1093/bioinformatics/btn217
-
Polpitiya AD, Qian WJ, Jaitly N, Petyuk VA, Adkins JN, Camp 2nd DG, et al. DAnTE: A statistical tool for quantitative analysis of -omics data. Bioinformatics (Oxford, England). 2008;24(13):1556-8. (Pubitemid 351911716)
-
(2008)
Bioinformatics
, vol.24
, Issue.13
, pp. 1556-1558
-
-
Polpitiya, A.D.1
Qian, W.-J.2
Jaitly, N.3
Petyuk, V.A.4
Adkins, J.N.5
Camp II, D.G.6
Anderson, G.A.7
Smith, R.D.8
-
12
-
-
44449161040
-
Mixed-effects statistical model for comparative LC-MS proteomics studies
-
Daly DS, Anderson KK, Panisko EA, Purvine SO, Fang R, Monroe ME, et al. Mixed-effects statistical model for comparative LC-MS proteomics studies. J Proteome Res. 2008;7(3):1209-17.
-
(2008)
J Proteome Res
, vol.7
, Issue.3
, pp. 1209-1217
-
-
Daly, D.S.1
Anderson, K.K.2
Panisko, E.A.3
Purvine, S.O.4
Fang, R.5
Monroe, M.E.6
-
13
-
-
70349885489
-
Normalization of peak intensities in bottomup MS-based proteomics using singular value decomposition
-
Karpievitch YV, Taverner T, Adkins JN, Callister SJ, Anderson GA, Smith RD, et al. Normalization of peak intensities in bottomup MS-based proteomics using singular value decomposition. Bioinformatics (Oxford, England). 2009;25(19):2573-80.
-
(2009)
Bioinformatics (Oxford, England)
, vol.25
, Issue.19
, pp. 2573-2580
-
-
Karpievitch, Y.V.1
Taverner, T.2
Adkins, J.N.3
Callister, S.J.4
Anderson, G.A.5
Smith, R.D.6
-
14
-
-
68549137863
-
A statistical framework for protein quantitation in bottomup MS-based proteomics
-
Karpievitch Y, Stanley J, Taverner T, Huang J, Adkins JN, Ansong C, et al. A statistical framework for protein quantitation in bottomup MS-based proteomics. Bioinformatics (Oxford, England). 2009;25(16):2028-34.
-
(2009)
Bioinformatics (Oxford, England).
, vol.25
, Issue.16
, pp. 2028-2034
-
-
Karpievitch, Y.1
Stanley, J.2
Taverner, T.3
Huang, J.4
Adkins, J.N.5
Ansong, C.6
-
15
-
-
29244448703
-
Parts per million mass accuracy on an orbitrap mass spectrometer via lock mass injection into a C-trap
-
DOI 10.1074/mcp.T500030-MCP200
-
Olsen JV, de Godoy LM, Li G, Macek B, Mortensen P, Pesch R, et al. Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap. Mol Cell Proteomics. 2005;4(12):2010-21. (Pubitemid 41830195)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.12
, pp. 2010-2021
-
-
Olsen, J.V.1
De Godoy, L.M.F.2
Li, G.3
Macek, B.4
Mortensen, P.5
Pesch, R.6
Makarov, A.7
Lange, O.8
Horning, S.9
Mann, M.10
-
16
-
-
67649400942
-
A practical guide to the MaxQuant computational platform for SILACbased quantitative proteomics
-
Cox J, Matic I, Hilger M, Nagaraj N, Selbach M, Olsen JV, et al. A practical guide to the MaxQuant computational platform for SILACbased quantitative proteomics. Nat Protoc. 2009;4(5):698-705.
-
(2009)
Nat Protoc.
, vol.4
, Issue.5
, pp. 698-705
-
-
Cox, J.1
Matic, I.2
Hilger, M.3
Nagaraj, N.4
Selbach, M.5
Olsen, J.V.6
-
17
-
-
76949097340
-
Quantitative proteomics reveals subset-specific viral recognition in dendritic cells
-
Luber CA, Cox J, Lauterbach H, Fancke B, Selbach M, Tschopp J, et al. Quantitative proteomics reveals subset-specific viral recognition in dendritic cells. Immunity. 2010;32(2):279-89.
-
(2010)
Immunity
, vol.32
, Issue.2
, pp. 279-289
-
-
Luber, C.A.1
Cox, J.2
Lauterbach, H.3
Fancke, B.4
Selbach, M.5
Tschopp, J.6
-
18
-
-
70449433751
-
Protein quantification in label-free LC-MS experiments
-
Clough T, Key M, Ott I, Ragg S, Schadow G, Vitek O. Protein quantification in label-free LC-MS experiments. J Proteome Res. 2009;8(11):5275-84.
-
(2009)
J Proteome Res
, vol.8
, Issue.11
, pp. 5275-5284
-
-
Clough, T.1
Key, M.2
Ott, I.3
Ragg, S.4
Schadow, G.5
Vitek, O.6
-
19
-
-
0001677717
-
Controlling the false discovery rate -A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate -A practical and powerful approach to multiple testing. J R Stat Soc Ser B-Methodol. 1995;57(1):289-300.
-
(1995)
J R Stat Soc Ser B-Methodol.
, vol.57
, Issue.1
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
20
-
-
0141705467
-
Estrogen-mediated down-regulation of E-cadherin in breast cancer cells
-
Oesterreich S, Deng W, Jiang S, Cui X, Ivanova M, Schiff R, et al. Estrogen-mediated down-regulation of E-cadherin in breast cancer cells. Cancer Res. 2003;63(17):5203-8. (Pubitemid 37139828)
-
(2003)
Cancer Research
, vol.63
, Issue.17
, pp. 5203-5208
-
-
Oesterreich, S.1
Deng, W.2
Jiang, S.3
Cui, X.4
Ivanova, M.5
Schiff, R.6
Kang, K.7
Hadsell, D.L.8
Behrens, J.9
Lee, A.V.10
-
21
-
-
12344308462
-
Estrogen receptor-negative breast carcinomas: A review of morphology and immunophenotypical analysis
-
DOI 10.1038/modpathol.3800255
-
Putti TC, El-Rehim DM, Rakha EA, Paish CE, Lee AH, Pinder SE, et al. Estrogen receptor-negative breast carcinomas: A review of morphology and immunophenotypical analysis. Mod Pathol. 2005;18(1):26-35. (Pubitemid 40128091)
-
(2005)
Modern Pathology
, vol.18
, Issue.1
, pp. 26-35
-
-
Putti, T.C.1
Abd El-Rehim, D.M.2
Rakha, E.A.3
Paish, C.E.4
Lee, A.H.S.5
Pinder, S.E.6
Ellis, I.O.7
-
22
-
-
77349089504
-
E-cadherin expression in estrogen receptor-positive and negative breast carcinomas of postmenopausal women
-
da Silva BB, dos Santos AR, Pires CG, Correa-Lima MA, Pereira-Filho JD, dos Santos LG, et al. E-cadherin expression in estrogen receptor-positive and negative breast carcinomas of postmenopausal women. Eur J Gynaecol Oncol. 2010;31(1):90-3.
-
(2010)
Eur J Gynaecol Oncol.
, vol.31
, Issue.1
, pp. 90-93
-
-
Da Silva, B.B.1
Dos Santos, A.R.2
Pires, C.G.3
Correa-Lima, M.A.4
Pereira-Filho, J.D.5
Dos Santos, L.G.6
-
23
-
-
77954656936
-
Significance of E-cadherin expression in triple-negative breast cancer
-
Kashiwagi S, Yashiro M, Takashima T, Nomura S, Noda S, Kawajiri H, et al. Significance of E-cadherin expression in triple-negative breast cancer. Br J Cancer. 2010;103(2):249-55.
-
(2010)
Br J Cancer
, vol.103
, Issue.2
, pp. 249-255
-
-
Kashiwagi, S.1
Yashiro, M.2
Takashima, T.3
Nomura, S.4
Noda, S.5
Kawajiri, H.6
-
24
-
-
77950903213
-
Annexin A1 regulates TGF-beta signaling and promotes metastasis formation of basal-like breast cancer cells
-
de Graauw M, van Miltenburg MH, Schmidt MK, Pont C, Lalai R, Kartopawiro J, et al. Annexin A1 regulates TGF-beta signaling and promotes metastasis formation of basal-like breast cancer cells. Proc Natl Acad Sci U S A. 2010;107(14):6340-5.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.14
, pp. 6340-6345
-
-
De Graauw, M.1
Van Miltenburg, M.H.2
Schmidt, M.K.3
Pont, C.4
Lalai, R.5
Kartopawiro, J.6
-
25
-
-
0035881617
-
Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns
-
Gruvberger S, Ringner M, Chen YD, Panavally S, Saal LH, Borg A, et al. Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns. Cancer Res. 2001;61 (16):5979-84. (Pubitemid 32762524)
-
(2001)
Cancer Research
, vol.61
, Issue.16
, pp. 5979-5984
-
-
Gruvberger, S.1
Ringner, M.2
Chen, Y.3
Panavally, S.4
Saal, L.H.5
Borg, A.6
Ferno, M.7
Peterson, C.8
Meltzer, P.S.9
-
26
-
-
44849142755
-
Estrogen receptor regulation of carbonic anhydrase XII through a distal enhancer in breast cancer
-
Barnett DH, Sheng S, Charn TH, Waheed A, Sly WS, Lin CY, et al. Estrogen receptor regulation of carbonic anhydrase XII through a distal enhancer in breast cancer. Cancer Res. 2008;68(9):3505-15.
-
(2008)
Cancer Res
, vol.68
, Issue.9
, pp. 3505-3515
-
-
Barnett, D.H.1
Sheng, S.2
Charn, T.H.3
Waheed, A.4
Sly, W.S.5
Lin, C.Y.6
-
27
-
-
79960614852
-
The role of S100 genes in breast cancer progression
-
McKiernan E, McDermott EW, Evoy D, Crown J, Duffy MJ. The role of S100 genes in breast cancer progression. Tumour Biol. 2011;32(3):441-50.
-
(2011)
Tumour Biol
, vol.32
, Issue.3
, pp. 441-450
-
-
McKiernan, E.1
McDermott, E.W.2
Evoy, D.3
Crown, J.4
Duffy, M.J.5
|