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Volumn 17, Issue 2, 2012, Pages 155-164

Proteomics pipeline for biomarker discovery of laser capture microdissected breast cancer tissue

Author keywords

Breast cancer; Data analysis; Estrogen receptor associated proteins; High resolution mass spectrometry; Label free proteomics

Indexed keywords

BIOLOGICAL MARKER; ESTROGEN RECEPTOR; ESTROGEN RECEPTOR ALPHA; PEPTIDE; PROGESTERONE RECEPTOR; PROTEIN; PROTEOME;

EID: 84865793194     PISSN: 10833021     EISSN: 15737039     Source Type: Journal    
DOI: 10.1007/s10911-012-9252-6     Document Type: Article
Times cited : (67)

References (27)
  • 4
    • 33846682587 scopus 로고    scopus 로고
    • NanoLC-FT-ICR MS improves proteome coverage attainable for 3000 laser-microdissected breast carcinoma cells
    • DOI 10.1002/pmic.200600293
    • Umar A, Luider TM, Foekens JA, Pasa-Tolic L. NanoLC-FT-ICR MS improves proteome coverage attainable for approximately 3000 laser-microdissected breast carcinoma cells. Proteomics. 2007;7(2):323-9. (Pubitemid 46188242)
    • (2007) Proteomics , vol.7 , Issue.2 , pp. 323-329
    • Umar, A.1    Luider, T.M.2    Foekens, J.A.3    Pasa-Tolic, L.4
  • 6
    • 22044435256 scopus 로고    scopus 로고
    • Method optimisation for peptide profiling of microdissected breast carcinoma tissue by matrix-assisted laser desorption/ionisation-time of flight and matrix-assisted laser desorption/ionisation-time of flight/time of flight-mass spectrometry
    • DOI 10.1002/pmic.200400128
    • Umar A, Dalebout JC, Timmermans AM, Foekens JA, Luider TM. Method optimisation for peptide profiling of microdissected breast carcinoma tissue by matrix-assisted laser desorption/ionisationtime of flight and matrix-assisted laser desorption/ionisation-time of flight/time of flight-mass spectrometry. Proteomics. 2005;5 (10):2680-8. (Pubitemid 40966495)
    • (2005) Proteomics , vol.5 , Issue.10 , pp. 2680-2688
    • Umar, A.1    Dalebout, J.C.H.2    Timmermans, A.M.3    Foekens, J.A.4    Luider, T.M.5
  • 8
    • 79951540395 scopus 로고    scopus 로고
    • Reproducibility of protein identification of selected cell types in Barrett's esophagus analyzed by combining laser-capture microdissection and mass spectrometry
    • Stingl C, van Vilsteren FG, Guzel C, Ten Kate FJ, Visser M, Krishnadath KK, et al. Reproducibility of protein identification of selected cell types in Barrett's esophagus analyzed by combining laser-capture microdissection and mass spectrometry. J Proteome Res. 2011;10(1):288-98.
    • (2011) J Proteome Res , vol.10 , Issue.1 , pp. 288-298
    • Stingl, C.1    Van Vilsteren, F.G.2    Guzel, C.3    Ten Kate, F.J.4    Visser, M.5    Krishnadath, K.K.6
  • 9
    • 57449099865 scopus 로고    scopus 로고
    • Max quant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox J,MannM. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol. 2008;26(12):1367-72.
    • (2008) Nat Biotechnol. , vol.26 , Issue.12 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 16
    • 67649400942 scopus 로고    scopus 로고
    • A practical guide to the MaxQuant computational platform for SILACbased quantitative proteomics
    • Cox J, Matic I, Hilger M, Nagaraj N, Selbach M, Olsen JV, et al. A practical guide to the MaxQuant computational platform for SILACbased quantitative proteomics. Nat Protoc. 2009;4(5):698-705.
    • (2009) Nat Protoc. , vol.4 , Issue.5 , pp. 698-705
    • Cox, J.1    Matic, I.2    Hilger, M.3    Nagaraj, N.4    Selbach, M.5    Olsen, J.V.6
  • 17
    • 76949097340 scopus 로고    scopus 로고
    • Quantitative proteomics reveals subset-specific viral recognition in dendritic cells
    • Luber CA, Cox J, Lauterbach H, Fancke B, Selbach M, Tschopp J, et al. Quantitative proteomics reveals subset-specific viral recognition in dendritic cells. Immunity. 2010;32(2):279-89.
    • (2010) Immunity , vol.32 , Issue.2 , pp. 279-289
    • Luber, C.A.1    Cox, J.2    Lauterbach, H.3    Fancke, B.4    Selbach, M.5    Tschopp, J.6
  • 19
    • 0001677717 scopus 로고
    • Controlling the false discovery rate -A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate -A practical and powerful approach to multiple testing. J R Stat Soc Ser B-Methodol. 1995;57(1):289-300.
    • (1995) J R Stat Soc Ser B-Methodol. , vol.57 , Issue.1 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 21
    • 12344308462 scopus 로고    scopus 로고
    • Estrogen receptor-negative breast carcinomas: A review of morphology and immunophenotypical analysis
    • DOI 10.1038/modpathol.3800255
    • Putti TC, El-Rehim DM, Rakha EA, Paish CE, Lee AH, Pinder SE, et al. Estrogen receptor-negative breast carcinomas: A review of morphology and immunophenotypical analysis. Mod Pathol. 2005;18(1):26-35. (Pubitemid 40128091)
    • (2005) Modern Pathology , vol.18 , Issue.1 , pp. 26-35
    • Putti, T.C.1    Abd El-Rehim, D.M.2    Rakha, E.A.3    Paish, C.E.4    Lee, A.H.S.5    Pinder, S.E.6    Ellis, I.O.7
  • 24
    • 77950903213 scopus 로고    scopus 로고
    • Annexin A1 regulates TGF-beta signaling and promotes metastasis formation of basal-like breast cancer cells
    • de Graauw M, van Miltenburg MH, Schmidt MK, Pont C, Lalai R, Kartopawiro J, et al. Annexin A1 regulates TGF-beta signaling and promotes metastasis formation of basal-like breast cancer cells. Proc Natl Acad Sci U S A. 2010;107(14):6340-5.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.14 , pp. 6340-6345
    • De Graauw, M.1    Van Miltenburg, M.H.2    Schmidt, M.K.3    Pont, C.4    Lalai, R.5    Kartopawiro, J.6
  • 26
    • 44849142755 scopus 로고    scopus 로고
    • Estrogen receptor regulation of carbonic anhydrase XII through a distal enhancer in breast cancer
    • Barnett DH, Sheng S, Charn TH, Waheed A, Sly WS, Lin CY, et al. Estrogen receptor regulation of carbonic anhydrase XII through a distal enhancer in breast cancer. Cancer Res. 2008;68(9):3505-15.
    • (2008) Cancer Res , vol.68 , Issue.9 , pp. 3505-3515
    • Barnett, D.H.1    Sheng, S.2    Charn, T.H.3    Waheed, A.4    Sly, W.S.5    Lin, C.Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.