Heterogeneous distribution of prokaryotes and viruses at the microscale in a tidal sediment

Aquatic Microbial Ecology

Volumn 69, Issue 3, 2013, Pages 183-192

  Carreira, Catia ^a,b   Larsen, Morten ^c,d,e   Glud, Ronnie N ^c,d,e,f   Brussaard, Corina P D ^b   Middelboe, Mathias ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b ROYAL NETHERLANDS INSTITUTE FOR SEA RESEARCH   (Netherlands)

^c SCOTTISH MARINE INSTITUTE   (United Kingdom)

^d UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^e Greenland Climate Research Centre   (Greenland)

^f AARHUS UNIVERSITY   (Denmark)

Author keywords

Hot spots; Spatial heterogeneity; Temporal dynamic; Virus host interactions

Indexed keywords

EID: 84881164670     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame01639     Document Type: Article

References (29)

1. Blackburn N, Fenchel T, Mitchell J (1998) Microscale nutrient patches in planktonic habitats shown by chemotactic bacteria. Science 282:2254-2256
2. Danovaro R, Middelboe M (2010) Separation of free virus particles from sediments in aquatic systems. Man Aquat Vir Ecol Chapt 8:72-79
3. Danovaro R, Armeni M, Dell'Anno A, Fabiano M and others (2001) Small-scale distribution of bacteria, enzymatic activities, and organic matter in coastal sediments. Microb Ecol 42:177-185
4. Danovaro R, Dell'Anno A, Corinaldesi C, Magagnini M, Noble R, Tamburini C, Weinbauer M (2008) Major viral impact on the functioning of benthic deep-sea ecosystems. Nature 454:1084-1087
5. Fenchel T (2008) Motility of bacteria in sediments. Aquat Microb Ecol 51:23-30
6. 2 dynamics in a shallow-water sediment: spatial and temporal heterogeneity. Ophelia 53:159-171
7. Fischer UR, Wieltschnig C, Kirschner A K T, Velimirov B (2003) Does virus-induced lysis contribute significantly to bacterial mortality in the oxygenated sediment layer of shallow oxbow lakes? Appl Environ Microbiol 69:5281-5289
8. Frederiksen MS, Glud RN (2006) Oxygen dynamics in the rhizosphere of Zostera marina: a two-dimensional planar optode study. Limnol Oceanogr 51:1072-1083
9. Glud RN (2008) Oxygen dynamics of marine sediments. Mar. Biol Res 4:243-289
10. Glud RN, Middelboe M (2004) Virus and bacteria dynamics of a coastal sediment: implication for benthic carbon cycling. Limnol Oceanogr 49:2073-2081
11. 2 distribution in benthic communities. Mar. Ecol Prog Ser 140:217-226
12. Glud RN, Wenzhöfer F, Tengberg A, Middelboe M, Oguri K, Kitazato H (2005) Distribution of oxygen in surface sediments from central Sagami Bay, Japan: in situ measurements by microelectrodes and planar optodes. Deep-Sea Res I 52:1974-1987
13. 2: a study from a deep ocean margin sediment (Sagami Bay, Japan). Limnol Oceanogr 54:1-12
14. Gundersen JK, Ramsing NB, Glud RN (1998) Predicting the signal of oxygen microsensors from physical dimensions, temperature, salinity, and oxygen concentrations. Limnol Oceanogr 43:1932-1937
15. V Hansen JW, Thamdrup B, Jorgensen BB (2000) Anoxic incubation of sediment in gas-tight plastic bags: a method for biogeochemical process studies. Mar. Ecol Prog Ser 208:273-282
16. Hewson I, O'Neil JM, Fuhrman JA, Dennison WC (2001) Virus-like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries. Limnol Oceanogr 46:1734-1746
17. Holst G, Grunwald B (2001) Luminescence lifetime imaging with transparent oxygen optodes. Sens Actuators B Chem 74:78-90
18. Holst G, Kohls O, Klimant I, König B, Kühl M, Richter T (1998) A modular luminescence lifetime imaging system for mapping oxygen distribution in biological samples. Sens Actuators B Chem 51:163-170
19. Middelboe M, Glud RN (2006) Viral activity along a trophic gradient in continental margin sediments off central Chile. Mar. Biol Res 2:41-51
20. Middelboe M, Glud RN, Finster K (2003) Distribution of viruses and bacteria in relation to diagenetic activity in an estuarine sediment. Limnol Oceanogr 48:1447-1456
21. Middelboe M, Glud RN, Wenzhöfer F, Oguri K, Kitazato H (2006) Spatial distribution and activity of viruses in the deep-sea sediments of Sagami Bay, Japan. Deep-Sea Res I 53:1-13
22. Middelboe M, Glud RN, Filippini M (2011) Viral abundance and activity in the deep sub-seafloor biosphere. Aquat Microb Ecol 63:1-8
23. Noble RT, Fuhrman JA (1998) Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat Microb Ecol 14:113-118
24. Revsbech NP (1989) Diffusion characteristics of microbial communities determined by use of oxygen microsensors. J Microbiol Methods 9:111-122
25. Seymour JR, Seuront L, Doubell M, Waters RL, Mitchell JG (2006) Microscale patchiness of virioplankton. J Mar. Biol Assoc UK 86:551-561
26. Seymour JR, Seuront L, Doubell MJ, Mitchell JG (2008) Mesoscale and microscale spatial variability of bacteria and viruses during a Phaeocystis globosa bloom in the eastern English Channel. Estuar Coast Shelf Sci 80:589-597
27. Siem-Jorgensen M, Glud RN, Middelboe M (2008) Viral dynamics in a coastal sediment: seasonal pattern, controlling factors and relations to the pelagic-benthic coupling. Mar. Biol Res 4:165-179
28. Sokal RR, Rohlf FJ (eds) (1995) Biometry the principles and practice of statistics in biological research. WH Freeman, New York, NY
29. Weinbauer MG (2004) Ecology of prokaryotic viruses. FEMS Microbiol Rev 28:127-181