Three-dimensional structure of RBcel1, a metagenome-derived psychrotolerant family GH5 endoglucanase

Acta Crystallographica Section F: Structural Biology and Crystallization Communications

Volumn 69, Issue 8, 2013, Pages 828-833

  Delsaute, Maud ^a   Berlemont, Renaud ^a,b   Dehareng, Dominique ^a   Van Elder, Dany ^c   Galleni, Moreno ^a   Bauvois, Cédric ^d  

^a UNIVERSITY OF LIÈGE   (Belgium)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITÉ LIBRE DE BRUXELLES   (Belgium)

^d Institut de Recherches Microbiologiques J M Wiame (IRMW)   (Belgium)

Author keywords

bacterial cellulose synthesis; endoglucanases; family 5 glycosyl hydrolases; psychrotolerant; uncultured bacteria

Indexed keywords

CELLULASE; GLYCOSIDASE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL CELLULOSE SYNTHESIS; BINDING SITE; CHEMISTRY; CONFORMATION; CRYSTALLIZATION; ENDOGLUCANASES; FAMILY 5 GLYCOSYL HYDROLASES; GENETICS; METAGENOME; MOLECULAR GENETICS; PHYSIOLOGY; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; PSYCHROTOLERANT; UNCULTURED BACTERIA;

BACTERIAL CELLULOSE SYNTHESIS; ENDOGLUCANASES; FAMILY 5 GLYCOSYL HYDROLASES; PSYCHROTOLERANT; UNCULTURED BACTERIA;

AMINO ACID SEQUENCE; BINDING SITES; CELLULASE; CRYSTALLIZATION; GLYCOSIDE HYDROLASES; METAGENOME; MOLECULAR CONFORMATION; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY;

EID: 84881156533     PISSN: None     EISSN: 17443091     Source Type: Journal    
DOI: 10.1107/S1744309113014565     Document Type: Article

References (42)

1. Adams, P D. et al. (2010). Acta Cryst. D66, 213-221
2. Aghajari, N., Feller, G., Gerday, C. & Haser, R. (1998) Protein Sci. 7, 564-572
3. Aspeborg, H., Coutinho, P. M., Wang, Y., Brumer, H. & Henrissat, B. (2012). BMC Evol. Biol. 12, 186
4. Berlemont, R., Delsaute, M., Pipers, D., D'Amico, S., Feller, G., Galleni, M. & Power, P. (2009). ISME J. 3, 1070-1081
5. Berlemont, R., Pipers, D., Delsaute, M., Angiono, F., Feller, G., Galleni, M. & Power, P. (2011). Rev. Argent. Microbiol. 43, 94-103
6. Bielecki, S., Krystynowicz, A., Turkiewicz, M. & Kalinowska, H. (2005). Bacterial Cellulose.Weinheim:Wiley-VCH. doi:10.1002/3527600035.bpol5003
7. Brzozowski, A. M., Lawson, D. M., Turkenburg, J. P., Bisgaard-Frantzen, H., Svendsen, A., Borchert, T. V., Dauter, Z., Wilson, K. S. & Davies, G. J. (2000). Biochemistry, 39, 9099-9107
8. Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S. & Richardson, D. C. (2010). Acta Cryst. D66, 12-21
9. Chen, C.-C., Guo, W.-J. & Isselbacher, K. J. (1987). Biochem. J. 247, 715-724
10. Correia, M. A., Mazumder, K., Brá s, J. L., Firbank, S. J., Zhu, Y., Lewis, R. J., York,W. S., Fontes, C. M. & Gilbert, H. J. (2011). J. Biol. Chem. 286, 22510- 22520
11. Cutfield, S. M., Davies, G. J., Murshudov, G., Anderson, B. F., Moody, P. C., Sullivan, P. A. & Cutfield, J. F. (1999). J. Mol. Biol. 294, 771-783
12. Davies, G. J. (1998). Biochem. Soc. Trans. 26, 167-173
13. Davies, G. J., Wilson, K. S. & Henrissat, B. (1997). Biochem. J. 321, 557-559
14. Domi'nguez, R., Souchon, H., Lascombe, M. & Alzari, P. M. (1996). J. Mol. Biol. 257, 1042-1051
15. Ducros, V., Czjzek, M., Belaich, A., Gaudin, C., Fierobe, H.-P., Belaich, J.-P., Davies, G. J. & Haser, R. (1995). Structure, 3, 939-949
16. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486-501
17. Harris, G. W., Jenkins, J. A., Connerton, I. & Pickersgill, R. W. (1996). Acta Cryst. D52, 393-401
18. Holm, L., Ka?a? ria? inen, S., Rosenstro?m, P. & Schenkel, A. (2008). Bioinformatics, 24, 2780-2781
19. Holm, L. & Rosenstro?m, P. (2010). Nucleic Acids Res. 38, W545-W549
20. Juers, D. H., Huber, R. E. & Matthews, B. W. (1999). Protein Sci. 8, 122-136
21. Kabsch, W. (2010). Acta Cryst. D66, 133-144
22. Kersters-Hilderson, H., Loontiens, F. G., Claeyssens, M. & De Bruyne, C. K. (1969). Eur. J. Biochem. 7, 434-441
23. Kim, H. W. & Ishikawa, K. (2011). Biochem. J. 437, 223-230
24. Krieger, E., Darden, T., Nabuurs, S. B., Finkelstein, A. & Vriend, G. (2004). Proteins, 57, 678-683
25. Laskowski, R. A. & Swindells, M. B. (2011). J. Chem. Inf. Model. 51, 2778- 2786
26. Linden, A., Mayans, O., Meyer-Klaucke, W., Antranikian, G. & Wilmanns, M. (2003). J. Biol. Chem. 278, 9875-9884
27. Lee, T. M., Farrow, M. F., Arnold, F. H. & Mayo, S. L. (2011). Protein Sci. 20, 1935-1940
28. Lo Leggio, L. & Larsen, S. (2002). FEBS Lett. 523, 103-108
29. Mazur, O. & Zimmer, J. (2011). J. Biol. Chem. 286, 17601-17606
30. Myrback, K. & Schilling, W. (1965). Enzymologia, 29, 306-314
31. Pell, G., Szabo, L., Charnock, S. J., Xie, H., Gloster, T. M., Davies, G. J. & Gilbert, H. J. (2004). J. Biol. Chem. 279, 11777-11788
32. Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C. & Ferrin, T. E. (2004). J. Comput. Chem. 25, 1605-1612
33. Pickersgill, R., Harris, G., Lo Leggio, L., Mayans, O. & Jenkins, J. (1998). Biochem. Soc. Trans. 26, 190-198
34. Robledo, M., Rivera, L., Jime'nez-Zurdo, J. I., Rivas, R., Dazzo, F., Vela'zquez, E., Marti'nez-Molina, E., Hirsch, A. M. & Mateos, P. F. (2012). Microb. Cell Fact. 11, 125.
35. Ro? mling, U. (2002). Res. Microbiol. 153, 205-212
36. Sabini, E., Schubert, H., Murshudov, G., Wilson, K. S., Siika-Aho, M. & Penttila?, M. (2000). Acta Cryst. D56, 3-13
37. Sakon, J., Adney, W. S., Himmel, M. E., Thomas, S. R. & Karplus, P. A. (1996). Biochemistry, 35, 10648-10660
38. Sidhu, G., Withers, S. G., Nguyen, N. T., McIntosh, L. P., Ziser, L. & Brayer, G. D. (1999). Biochemistry, 38, 5346-5354
39. Smith, N., Witham, S., Sarkar, S., Zhang, J., Li, L., Li, C. & Alexov, E. (2012). Bioinformatics, 28, 1655-1657
40. Vocadlo, D. J. & Davies, G. J. (2008). Curr. Opin. Chem. Biol. 12, 539-555
41. Wilkins, M. R., Gasteiger, E., Bairoch, A., Sanchez, J. C., Williams, K. L., Appel, R. D. & Hochstrasser, D. F. (1999). Methods Mol. Biol. 112, 531-552
42. Zheng, B., Yang,W., Zhao, X., Wang, Y., Lou, Z., Rao, Z. & Feng, Y. (2012). J. Biol. Chem. 287, 8336-8346.