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Volumn 8, Issue 8, 2013, Pages

Clonal Expansion Analysis of Transposon Insertions by High-Throughput Sequencing Identifies Candidate Cancer Genes in a PiggyBac Mutagenesis Screen

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 84881112695     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0072338     Document Type: Article
Times cited : (12)

References (29)
  • 1
    • 67649450275 scopus 로고    scopus 로고
    • High-throughput insertional mutagenesis screens in mice to identify oncogenic networks
    • doi:10.1038/nrc2647
    • Kool J, Berns A, (2009) High-throughput insertional mutagenesis screens in mice to identify oncogenic networks. Nat Rev Cancer 9: 389-399. doi:10.1038/nrc2647. PubMed: 19461666.
    • (2009) Nat Rev Cancer , vol.9 , pp. 389-399
    • Kool, J.1    Berns, A.2
  • 2
    • 77957132245 scopus 로고    scopus 로고
    • Harnessing transposons for cancer gene discovery
    • doi:10.1038/nrc2916
    • Copeland NG, Jenkins NA, (2010) Harnessing transposons for cancer gene discovery. Nat Rev Cancer 10: 696-706. doi:10.1038/nrc2916. PubMed: 20844553.
    • (2010) Nat Rev Cancer , vol.10 , pp. 696-706
    • Copeland, N.G.1    Jenkins, N.A.2
  • 3
    • 22444431606 scopus 로고    scopus 로고
    • Mammalian mutagenesis using a highly mobile somatic Sleeping Beauty transposon system
    • doi:10.1038/nature03691
    • Dupuy AJ, Akagi K, Largaespada DA, Copeland NG, Jenkins NA, (2005) Mammalian mutagenesis using a highly mobile somatic Sleeping Beauty transposon system. Nature 436: 221-226. doi:10.1038/nature03691. PubMed: 16015321.
    • (2005) Nature , vol.436 , pp. 221-226
    • Dupuy, A.J.1    Akagi, K.2    Largaespada, D.A.3    Copeland, N.G.4    Jenkins, N.A.5
  • 4
    • 22444444402 scopus 로고    scopus 로고
    • Cancer gene discovery in solid tumours using transposon-based somatic mutagenesis in the mouse
    • doi:10.1038/nature03681
    • Collier LS, Carlson CM, Ravimohan S, Dupuy AJ, Largaespada DA, (2005) Cancer gene discovery in solid tumours using transposon-based somatic mutagenesis in the mouse. Nature 436: 272-276. doi:10.1038/nature03681. PubMed: 16015333.
    • (2005) Nature , vol.436 , pp. 272-276
    • Collier, L.S.1    Carlson, C.M.2    Ravimohan, S.3    Dupuy, A.J.4    Largaespada, D.A.5
  • 5
    • 78449294626 scopus 로고    scopus 로고
    • PiggyBac transposon mutagenesis: a tool for cancer gene discovery in mice
    • doi:10.1126/science.1193004
    • Rad R, Rad L, Wang W, Cadinanos J, Vassiliou G, et al. (2010) PiggyBac transposon mutagenesis: a tool for cancer gene discovery in mice. Science 330: 1104-1107. doi:10.1126/science.1193004. PubMed: 20947725.
    • (2010) Science , vol.330 , pp. 1104-1107
    • Rad, R.1    Rad, L.2    Wang, W.3    Cadinanos, J.4    Vassiliou, G.5
  • 6
    • 80054844707 scopus 로고    scopus 로고
    • piggyBac transposon somatic mutagenesis with an activated reporter and tracker (PB-SMART) for genetic screens in mice
    • doi:10.1371/journal.pone.0026650
    • Landrette SF, Cornett JC, Ni TK, Bosenberg MW, Xu T, (2011) piggyBac transposon somatic mutagenesis with an activated reporter and tracker (PB-SMART) for genetic screens in mice. PLOS ONE 6: e26650. doi:10.1371/journal.pone.0026650. PubMed: 22039523.
    • (2011) PLOS ONE , vol.6
    • Landrette, S.F.1    Cornett, J.C.2    Ni, T.K.3    Bosenberg, M.W.4    Xu, T.5
  • 7
    • 80052765869 scopus 로고    scopus 로고
    • Novel molecular and computational methods improve the accuracy of insertion site analysis in Sleeping Beauty-induced tumors
    • doi:10.1371/journal.pone.0024668
    • Brett BT, Berquam-Vrieze KE, Nannapaneni K, Huang J, Scheetz TE, et al. (2011) Novel molecular and computational methods improve the accuracy of insertion site analysis in Sleeping Beauty-induced tumors. PLOS ONE 6: e24668. doi:10.1371/journal.pone.0024668. PubMed: 21931803.
    • (2011) PLOS ONE , vol.6
    • Brett, B.T.1    Berquam-Vrieze, K.E.2    Nannapaneni, K.3    Huang, J.4    Scheetz, T.E.5
  • 8
    • 83055187859 scopus 로고    scopus 로고
    • High-throughput semiquantitative analysis of insertional mutations in heterogeneous tumors
    • doi:10.1101/gr.112763.110
    • Koudijs MJ, Klijn C, van der Weyden L, Kool J, ten Hoeve J, et al. (2011) High-throughput semiquantitative analysis of insertional mutations in heterogeneous tumors. Genome Res 21: 2181-2189. doi:10.1101/gr.112763.110. PubMed: 21852388.
    • (2011) Genome Res , vol.21 , pp. 2181-2189
    • Koudijs, M.J.1    Klijn, C.2    van der Weyden, L.3    Kool, J.4    ten Hoeve, J.5
  • 9
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • doi:10.1186/gb-2009-10-3-r25
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25. doi:10.1186/gb-2009-10-3-r25. PubMed: 19261174.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 10
    • 48249130858 scopus 로고    scopus 로고
    • Chromosomal transposition of PiggyBac in mouse embryonic stem cells
    • doi:10.1073/pnas.0801017105
    • Wang W, Lin C, Lu D, Ning Z, Cox T, et al. (2008) Chromosomal transposition of PiggyBac in mouse embryonic stem cells. Proc Natl Acad Sci U S A 105: 9290-9295. doi:10.1073/pnas.0801017105. PubMed: 18579772.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 9290-9295
    • Wang, W.1    Lin, C.2    Lu, D.3    Ning, Z.4    Cox, T.5
  • 12
    • 0024025705 scopus 로고
    • Organ specificity of tumor metastasis: role of preferential adhesion, invasion and growth of malignant cells at specific secondary sites
    • doi:10.1007/BF00046483
    • Nicolson GL, (1988) Organ specificity of tumor metastasis: role of preferential adhesion, invasion and growth of malignant cells at specific secondary sites. Cancer Metastasis Rev 7: 143-188. doi:10.1007/BF00046483. PubMed: 3293836.
    • (1988) Cancer Metastasis Rev , vol.7 , pp. 143-188
    • Nicolson, G.L.1
  • 13
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • 19131956
    • Huang DW, Sherman BT, Lempicki RA, (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57. PubMed: 19131956.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 14
    • 79952284127 scopus 로고    scopus 로고
    • Hallmarks of cancer: the next generation
    • doi:10.1016/j.cell.2011.02.013
    • Hanahan D, Weinberg RA, (2011) Hallmarks of cancer: the next generation. Cell 144: 646-674. doi:10.1016/j.cell.2011.02.013. PubMed: 21376230.
    • (2011) Cell , vol.144 , pp. 646-674
    • Hanahan, D.1    Weinberg, R.A.2
  • 15
    • 41949089467 scopus 로고    scopus 로고
    • Mastermind-like domain-containing 1 (MAMLD1 or CXorf6) transactivates the Hes3 promoter, augments testosterone production, and contains the SF1 target sequence
    • 18162467
    • Fukami M, Wada Y, Okada M, Kato F, Katsumata N, et al. (2008) Mastermind-like domain-containing 1 (MAMLD1 or CXorf6) transactivates the Hes3 promoter, augments testosterone production, and contains the SF1 target sequence. J Biol Chem 283: 5525-5532. PubMed: 18162467.
    • (2008) J Biol Chem , vol.283 , pp. 5525-5532
    • Fukami, M.1    Wada, Y.2    Okada, M.3    Kato, F.4    Katsumata, N.5
  • 16
    • 73549092704 scopus 로고    scopus 로고
    • Emerging role of Notch signaling in epidermal differentiation and skin cancer
    • doi:10.4161/cbt.8.21.9921
    • Panelos J, Massi D, (2009) Emerging role of Notch signaling in epidermal differentiation and skin cancer. Cancer Biol Ther 8: 1986-1993. doi:10.4161/cbt.8.21.9921. PubMed: 19783903.
    • (2009) Cancer Biol Ther , vol.8 , pp. 1986-1993
    • Panelos, J.1    Massi, D.2
  • 17
    • 33947603008 scopus 로고    scopus 로고
    • Protein kinase C and other diacylglycerol effectors in cancer
    • doi:10.1038/nrc2110
    • Griner EM, Kazanietz MG, (2007) Protein kinase C and other diacylglycerol effectors in cancer. Nat Rev Cancer 7: 281-294. doi:10.1038/nrc2110. PubMed: 17384583.
    • (2007) Nat Rev Cancer , vol.7 , pp. 281-294
    • Griner, E.M.1    Kazanietz, M.G.2
  • 18
    • 84859947197 scopus 로고    scopus 로고
    • Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma
    • doi:10.1073/pnas.1202490109
    • Mann KM, Ward JM, Yew CC, Kovochich A, Dawson DW, et al. (2012) Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma. Proc Natl Acad Sci U S A 109: 5934-5941. doi:10.1073/pnas.1202490109. PubMed: 22421440.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 5934-5941
    • Mann, K.M.1    Ward, J.M.2    Yew, C.C.3    Kovochich, A.4    Dawson, D.W.5
  • 19
    • 63049105067 scopus 로고    scopus 로고
    • A transposon-based genetic screen in mice identifies genes altered in colorectal cancer
    • doi:10.1126/science.1163040
    • Starr TK, Allaei R, Silverstein KA, Staggs RA, Sarver AL, et al. (2009) A transposon-based genetic screen in mice identifies genes altered in colorectal cancer. Science 323: 1747-1750. doi:10.1126/science.1163040. PubMed: 19251594.
    • (2009) Science , vol.323 , pp. 1747-1750
    • Starr, T.K.1    Allaei, R.2    Silverstein, K.A.3    Staggs, R.A.4    Sarver, A.L.5
  • 20
    • 82255179056 scopus 로고    scopus 로고
    • Insertional mutagenesis identifies multiple networks of cooperating genes driving intestinal tumorigenesis
    • doi:10.1038/ng.990
    • March HN, Rust AG, Wright NA, ten Hoeve J, de Ridder J, et al. (2011) Insertional mutagenesis identifies multiple networks of cooperating genes driving intestinal tumorigenesis. Nat Genet 43: 1202-1209. doi:10.1038/ng.990. PubMed: 22057237.
    • (2011) Nat Genet , vol.43 , pp. 1202-1209
    • March, H.N.1    Rust, A.G.2    Wright, N.A.3    ten Hoeve, J.4    de Ridder, J.5
  • 21
    • 23744479962 scopus 로고    scopus 로고
    • Efficient transposition of the piggyBac (PB) transposon in mammalian cells and mice
    • doi:10.1016/j.cell.2005.07.013
    • Ding S, Wu X, Li G, Han M, Zhuang Y, et al. (2005) Efficient transposition of the piggyBac (PB) transposon in mammalian cells and mice. Cell 122: 473-483. doi:10.1016/j.cell.2005.07.013. PubMed: 16096065.
    • (2005) Cell , vol.122 , pp. 473-483
    • Ding, S.1    Wu, X.2    Li, G.3    Han, M.4    Zhuang, Y.5
  • 22
    • 70349176337 scopus 로고    scopus 로고
    • Chromosomal mobilization and reintegration of Sleeping Beauty and PiggyBac transposons
    • doi:10.1002/dvg.20508
    • Liang Q, Kong J, Stalker J, Bradley A, (2009) Chromosomal mobilization and reintegration of Sleeping Beauty and PiggyBac transposons. Genesis 47: 404-408. doi:10.1002/dvg.20508. PubMed: 19391106.
    • (2009) Genesis , vol.47 , pp. 404-408
    • Liang, Q.1    Kong, J.2    Stalker, J.3    Bradley, A.4
  • 23
    • 84875260104 scopus 로고    scopus 로고
    • The piggyBac Transposon Displays Local and Distant Reintegration Preferences and Can Cause Mutations at Noncanonical Integration Sites
    • doi:10.1128/MCB.00670-12
    • Li MA, Pettitt SJ, Eckert S, Ning Z, Rice S, et al. (2013) The piggyBac Transposon Displays Local and Distant Reintegration Preferences and Can Cause Mutations at Noncanonical Integration Sites. Mol Cell Biol 33: 1317-1330. doi:10.1128/MCB.00670-12. PubMed: 23358416.
    • (2013) Mol Cell Biol , vol.33 , pp. 1317-1330
    • Li, M.A.1    Pettitt, S.J.2    Eckert, S.3    Ning, Z.4    Rice, S.5
  • 24
    • 0027401607 scopus 로고
    • The multistep nature of cancer
    • doi:10.1016/0168-9525(93)90209-Z
    • Vogelstein B, Kinzler KW, (1993) The multistep nature of cancer. Trends Genet 9: 138-141. doi:10.1016/0168-9525(93)90209-Z. PubMed: 8516849.
    • (1993) Trends Genet , vol.9 , pp. 138-141
    • Vogelstein, B.1    Kinzler, K.W.2
  • 25
    • 0030941458 scopus 로고    scopus 로고
    • p53, the cellular gatekeeper for growth and division
    • doi:10.1016/S0092-8674(00)81871-1
    • Levine AJ, (1997) p53, the cellular gatekeeper for growth and division. Cell 88: 323-331. doi:10.1016/S0092-8674(00)81871-1. PubMed: 9039259.
    • (1997) Cell , vol.88 , pp. 323-331
    • Levine, A.J.1
  • 26
    • 67651089508 scopus 로고    scopus 로고
    • Improved protocols for the illumina genome analyzer sequencing system
    • Unit 18 12, Chapter 18: Unit 18 12
    • Quail MA, Swerdlow H, Turner DJ, (2009) Improved protocols for the illumina genome analyzer sequencing system. Curr Protoc Hum Genet Chapter 18: Unit 18 12.
    • (2009) Curr Protoc Hum Genet
    • Quail, M.A.1    Swerdlow, H.2    Turner, D.J.3
  • 27
    • 69849091995 scopus 로고    scopus 로고
    • A high-throughput splinkerette-PCR method for the isolation and sequencing of retroviral insertion sites
    • doi:10.1038/nprot.2009.64
    • Uren AG, Mikkers H, Kool J, van der Weyden L, Lund AH, et al. (2009) A high-throughput splinkerette-PCR method for the isolation and sequencing of retroviral insertion sites. Nat Protoc 4: 789-798. doi:10.1038/nprot.2009.64. PubMed: 19528954.
    • (2009) Nat Protoc , vol.4 , pp. 789-798
    • Uren, A.G.1    Mikkers, H.2    Kool, J.3    van der Weyden, L.4    Lund, A.H.5
  • 28
    • 0029993450 scopus 로고    scopus 로고
    • Role of the INK4a locus in tumor suppression and cell mortality
    • doi:10.1016/S0092-8674(00)81079-X
    • Serrano M, Lee H, Chin L, Cordon-Cardo C, Beach D, et al. (1996) Role of the INK4a locus in tumor suppression and cell mortality. Cell 85: 27-37. doi:10.1016/S0092-8674(00)81079-X. PubMed: 8620534.
    • (1996) Cell , vol.85 , pp. 27-37
    • Serrano, M.1    Lee, H.2    Chin, L.3    Cordon-Cardo, C.4    Beach, D.5
  • 29
    • 70350603057 scopus 로고    scopus 로고
    • Cancer genomics identifies regulatory gene networks associated with the transition from dysplasia to advanced lung adenocarcinomas induced by c-Raf-1
    • doi:10.1371/journal.pone.0007315
    • Rohrbeck A, Borlak J, (2009) Cancer genomics identifies regulatory gene networks associated with the transition from dysplasia to advanced lung adenocarcinomas induced by c-Raf-1. PLOS ONE 4: e7315. doi:10.1371/journal.pone.0007315. PubMed: 19812696.
    • (2009) PLOS ONE , vol.4
    • Rohrbeck, A.1    Borlak, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.