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Volumn 5, Issue 4, 2013, Pages 355-357

Hydroxymethylation- and methylation-sensitive tag sequencing: How will this technology change clinical applications of DNA methylation profiling?

Author keywords

clinical application; DNA hydroxymethylation; DNA methylation; HMST seq

Indexed keywords

BIOLOGICAL MARKER;

EID: 84881111958     PISSN: 17501911     EISSN: 1750192X     Source Type: Journal    
DOI: 10.2217/epi.13.33     Document Type: Review
Times cited : (3)

References (19)
  • 1
    • 32344450824 scopus 로고    scopus 로고
    • Genomic DNA methylation: The mark and its mediators
    • Klose RJ, Bird AP. Genomic DNA methylation: The mark and its mediators. Trends Biochem. Sci. 31(2), 89-97 (2006
    • (2006) Trends Biochem. Sci , vol.31 , Issue.2 , pp. 89-97
    • Klose, R.J.1    Bird, A.P.2
  • 2
    • 66149123748 scopus 로고    scopus 로고
    • The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
    • Kriaucionis S, Heintz N. The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 324(5929), 929-930 (2009
    • (2009) Science , vol.324 , Issue.5929 , pp. 929-930
    • Kriaucionis, S.1    Heintz, N.2
  • 3
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
    • Tahiliani M, Koh KP, Shen Y et al Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324(5929), 930-935 (2009
    • (2009) Science , vol.324 , Issue.5929 , pp. 930-935
    • Tahiliani, M.1    Koh, K.P.2    Shen, Y.3
  • 4
    • 80052461558 scopus 로고    scopus 로고
    • Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
    • Ito S, Shen L, Dai Q et al. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333(6047), 1300-1303 (2011
    • (2011) Science , vol.333 , Issue.6047 , pp. 1300-1303
    • Ito, S.1    Shen, L.2    Dai, Q.3
  • 5
    • 77954061853 scopus 로고    scopus 로고
    • Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA
    • Nestor C, Ruzov A, Meehan R, Dunican D. Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA. Biotechniques 48(4), 317-319 (2010
    • (2010) Biotechniques , vol.48 , Issue.4 , pp. 317-319
    • Nestor, C.1    Ruzov, A.2    Meehan, R.3    Dunican, D.4
  • 6
    • 84875852476 scopus 로고    scopus 로고
    • Integrated detection of both 5-mC and 5-hmC by high-Throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation
    • Gao F, Xia Y, Wang J et al. Integrated detection of both 5-mC and 5-hmC by high-Throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation. Epigenetics 8(4), 421-430 (2013
    • (2013) Epigenetics , vol.8 , Issue.4 , pp. 421-430
    • Gao, F.1    Xia, Y.2    Wang, J.3
  • 7
    • 84861221693 scopus 로고    scopus 로고
    • Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
    • Booth MJ, Branco MR, Ficz G et al. Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Science 336(6083), 934-937 (2012
    • (2012) Science , vol.336 , Issue.6083 , pp. 934-937
    • Booth, M.J.1    Branco, M.R.2    Ficz, G.3
  • 8
    • 84861990517 scopus 로고    scopus 로고
    • Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome
    • Yu M, Hon GC, Szulwach KE et al. Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome. Cell 149(6), 1368-1380 (2012
    • (2012) Cell , vol.149 , Issue.6 , pp. 1368-1380
    • Yu, M.1    Hon, G.C.2    Szulwach, K.E.3
  • 9
    • 79956330964 scopus 로고    scopus 로고
    • CpG islands and the regulation of transcription
    • Deaton AM, Bird A. CpG islands and the regulation of transcription. Genes Dev. 25(10), 1010-1022 (2011
    • (2011) Genes Dev , vol.25 , Issue.10 , pp. 1010-1022
    • Deaton, A.M.1    Bird, A.2
  • 10
    • 79959686697 scopus 로고    scopus 로고
    • Measurement of GSTP1 promoter methylation in body fluids may complement PSA screening: A meta-Analysis
    • Wu T, Giovannucci E, Welge J, Mallick P, Tang WY, Ho SM. Measurement of GSTP1 promoter methylation in body fluids may complement PSA screening: A meta-Analysis. Br. J. Cancer 105(1), 65-73 (2011
    • (2011) Br. J. Cancer , vol.105 , Issue.1 , pp. 65-73
    • Wu, T.1    Giovannucci, E.2    Welge, J.3    Mallick, P.4    Tang, W.Y.5    Ho, S.M.6
  • 11
    • 20044372154 scopus 로고    scopus 로고
    • MGMT gene silencing and benefit from temozolomide in glioblastoma
    • Hegi ME, Diserens AC, Gorlia T et al. MGMT gene silencing and benefit from temozolomide in glioblastoma. N. Engl. J. Med. 352(10), 997-1003 (2005
    • (2005) N. Engl. J. Med , vol.352 , Issue.10 , pp. 997-1003
    • Hegi, M.E.1    Diserens, A.C.2    Gorlia, T.3
  • 12
    • 85027954125 scopus 로고    scopus 로고
    • DNA methylation profiling in the clinic: Applications and challenges
    • Heyn H, Esteller M. DNA methylation profiling in the clinic: Applications and challenges. Nat. Rev. Genet. 13(10), 679-692 (2012
    • (2012) Nat. Rev. Genet , vol.13 , Issue.10 , pp. 679-692
    • Heyn, H.1    Esteller, M.2
  • 13
    • 80053144962 scopus 로고    scopus 로고
    • A decade of exploring the cancer epigenome-biological and translational implications
    • Baylin SB, Jones PA. A decade of exploring the cancer epigenome-biological and translational implications. Nat. Rev. Cancer 11(10), 726-734 (2011
    • (2011) Nat. Rev. Cancer , vol.11 , Issue.10 , pp. 726-734
    • Baylin, S.B.1    Jones, P.A.2
  • 14
    • 79960127277 scopus 로고    scopus 로고
    • Tissue-specific distribution and dynamic changes of 5- hydroxymethylcytosine in mammalian genomes
    • Kinney SM, Chin HG, Vaisvila R et al. Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes. J. Biol. Chem. 286(28), 24685-24693 (2011
    • (2011) J. Biol. Chem , vol.286 , Issue.28 , pp. 24685-24693
    • Kinney, S.M.1    Chin, H.G.2    Vaisvila, R.3
  • 15
    • 84255200412 scopus 로고    scopus 로고
    • 5-hydroxymethylcytosine is strongly depleted in human cancers but its levels do not correlate with IDH1 mutations
    • Jin SG, Jiang Y, Qiu R et al. 5-hydroxymethylcytosine is strongly depleted in human cancers but its levels do not correlate with IDH1 mutations. Cancer Res. 71(24), 7360-7365 (2011
    • (2011) Cancer Res , vol.71 , Issue.24 , pp. 7360-7365
    • Jin, S.G.1    Jiang, Y.2    Qiu, R.3
  • 16
    • 80051578149 scopus 로고    scopus 로고
    • Dominantly inherited constitutional epigenetic silencing of MLH1 in a cancer-Affected family is linked to a single nucleotide variant within the 5́UTR
    • Hitchins MP, Rapkins RW, Kwok CT et al. Dominantly inherited constitutional epigenetic silencing of MLH1 in a cancer-Affected family is linked to a single nucleotide variant within the 5́UTR. Cancer Cell 20(2), 200-213 (2011
    • (2011) Cancer Cell , vol.20 , Issue.2 , pp. 200-213
    • Hitchins, M.P.1    Rapkins, R.W.2    Kwok, C.T.3
  • 17
    • 79959868249 scopus 로고    scopus 로고
    • Targeted methylation of two tumor suppressor genes is sufficient to transform mesenchymal stem cells into cancer stem/initiating cells
    • Teng IW, Hou PC, Lee KD et al. Targeted methylation of two tumor suppressor genes is sufficient to transform mesenchymal stem cells into cancer stem/initiating cells. Cancer Res. 71(13), 4653-4663 (2011
    • (2011) Cancer Res , vol.71 , Issue.13 , pp. 4653-4663
    • Teng, I.W.1    Hou, P.C.2    Lee, K.D.3
  • 18
    • 84860561774 scopus 로고    scopus 로고
    • Epigenetic reprogramming of cancer cells via targeted DNA methylation
    • Rivenbark AG, Stolzenburg S, Beltran AS et al. Epigenetic reprogramming of cancer cells via targeted DNA methylation. Epigenetics 7(4), 350-360 (2012
    • (2012) Epigenetics , vol.7 , Issue.4 , pp. 350-360
    • Rivenbark, A.G.1    Stolzenburg, S.2    Beltran, A.S.3
  • 19
    • 84860589110 scopus 로고    scopus 로고
    • Selective DNA demethylation by fusion of TDG with a sequence-specific DNA-binding domain
    • Gregory DJ, Mikhaylova L, Fedulov AV. Selective DNA demethylation by fusion of TDG with a sequence-specific DNA-binding domain. Epigenetics 7(4), 344-349 (2012
    • (2012) Epigenetics , vol.7 , Issue.4 , pp. 344-349
    • Gregory, D.J.1    Mikhaylova, L.2    Fedulov, A.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.