Chemical approaches for the construction of multi-enzyme reaction systems

Current Opinion in Structural Biology

Volumn 23, Issue 4, 2013, Pages 613-621

  Schoffelen, Sanne ^a   Van Hest, Jan C M ^a  

^a RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ALKYNE; AZIDE; DNA; MOLECULAR SCAFFOLD; MULTIENZYME COMPLEX; NANOPARTICLE;

AMINO TERMINAL SEQUENCE; BIOCATALYST; CONJUGATION; CYCLOADDITION; ENZYME ENGINEERING; ENZYME IMMOBILIZATION; ENZYME LOCALIZATION; ENZYME MECHANISM; ENZYME MODIFICATION; MICROFLUIDICS; NONHUMAN; POSITIONAL IMMOBILIZATION; PRIORITY JOURNAL; PROTEIN CROSS LINKING; RANDOM CO IMMOBILIZATION; REVIEW; SEQUENTIAL IMMOBILIZATION; SITE SPECIFIC ENZYME IMMOBILIZATION; TRANSAMINATION;

ALKYNES; AZIDES; CYCLOADDITION REACTION; DNA; MULTIENZYME COMPLEXES; NANOPARTICLES; PROTEIN ENGINEERING;

EID: 84881093666     PISSN: 0959440X     EISSN: 1879033X     Source Type: Journal    
DOI: 10.1016/j.sbi.2013.06.010     Document Type: Review

References (47)

1. Ricca E., Brucher B., Schrittwieser J.H. Multi-enzymatic cascade reactions: overview and perspectives. Adv Synth Catal 2011, 353:2239-2262.
2. Zhang Y.H.P. Substrate channeling and enzyme complexes for biotechnological applications. Biotechnol Adv 2011, 29:715-725.
3. Schoffelen S., van Hest J.C.M. Multi-enzyme systems: bringing enzymes together in vitro. Soft Matter 2012, 8:1736-1746.
4. Hirakawa H., Haga T., Nagamune T. Artificial protein complexes for biocatalysis. Top Catal 2012, 55:1124-1137.
5. Kim H., Sun Q., Liu F., Tsai S.L., Chen W. Biologically assembled nanobiocatalysts. Top Catal 2012, 55:1138-1145.
6. Conrado R.J., Wu G.C., Boock J.T., Xu H.S., Chen S.Y., Lebar T., Turnsek J., Tomsic N., Avbelj M., Gaber R., Koprivnjak T., et al. DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency. Nucleic Acids Res 2012, 40:1879-1889.
7. Delebecque C.J., Lindner A.B., Silver P.A., Aldaye F.A. Organization of intracellular reactions with rationally designed RNA assemblies. Science 2011, 333:470-474.
8. Dueber J.E., Wu G.C., Malmirchegini G.R., Moon T.S., Petzold C.J., Ullal A.V., Prather K.L.J., Keasling J.D. Synthetic protein scaffolds provide modular control over metabolic flux. Nat Biotechnol 2009, 27. 753-U107.
9. You C., Myung S., Zhang Y.H.P. Facilitated substrate channeling in a self-assembled trifunctional enzyme complex. Angew Chem Int Ed 2012, 51:8787-8790.
10. Hirakawa H., Nagamune T. Molecular assembly of p450 with ferredoxin and ferredoxin reductase by fusion to PCNA. ChemBioChem 2010, 11:1517-1520.
11. Good M.C., Zalatan J.G., Lim W.A. Scaffold proteins: hubs for controlling the flow of cellular information. Science 2011, 332:680-686.
12. Stephanopoulos N., Francis M.B. Choosing an effective protein bioconjugation strategy. Nat Chem Biol 2011, 7:876-884.
13. Betancor L., Luckarift H.R. Co-immobilized coupled enzyme systems in biotechnology. Biotechnol Genet Eng 2010, 27:95-114.
14. Zhang H.F., Liu R.X., Zheng J.B. Selective determination of cholesterol based on cholesterol oxidase-alkaline phosphatase bienzyme electrode. Analyst 2012, 137:5363-5367.
15. Eguilaz M., Villalonga R., Yanez-Sedeno P., Pingarron J.M. Designing electrochemical interfaces with functionalized magnetic nanoparticles and wrapped carbon nanotubes as platforms for the construction of high-performance bienzyme biosensors. Anal Chem 2011, 83:7807-7814.
16. Yang K., Xu N.S., Su W.W. Co-immobilized enzymes in magnetic chitosan beads for improved hydrolysis of macromolecular substrates under a time-varying magnetic field. J Biotechnol 2010, 148:119-127.
17. Dong Q., Ouyang L.M., Yu H.L., Xu J.H. Efficient biosynthesis of uridine diphosphate glucose from maltodextrin by multiple enzymes immobilized on magnetic nanoparticles. Carbohydr Res 2010, 345:1622-1626.
18. Netto C.G.C.M., Toma H.E., Andrade L.H. Superparamagnetic nanoparticles as versatile carriers and supporting materials for enzymes. J Mol Catal B: Enzym 2013, 85-86:71-92.
19. Zhang Y., Gao F., Zhang S.P., Su Z.G., Ma G.H., Wang P. Simultaneous production of 1,3-dihydroxyacetone and xylitol from glycerol and xylose using a nanoparticle-supported multi-enzyme system with in situ cofactor regeneration. Bioresour Technol 2011, 102:1837-1843.
20. Grotzky A., Nauser T., Erdogan H., Schluter A.D., Walde P. A fluorescently labeled dendronized polymer-enzyme conjugate carrying multiple copies of two different types of active enzymes. J Am Chem Soc 2012, 134:11392-11395.
21. Babich L., Hartog A.F., van Hemert L.J.C., Rutjes F.P.J.T., Wever R. Synthesis of carbohydrates in a continuous flow reactor by immobilized phosphatase and aldolase. ChemSusChem 2012, 5:2348-2353.
22. Fornera S., Kuhn P., Lombardi D., Schluter A.D., Dittrich P.S., Walde P. Sequential immobilization of enzymes in microfluidic channels for cascade reactions. ChemPlusChem 2012, 77:98-101.
23. Niemeyer C.M., Boldt L., Ceyhan B., Blohm D. DNA-directed immobilization: efficient, reversible, and site-selective surface binding of proteins by means of covalent DNA-streptavidin conjugates. Anal Biochem 1999, 268:54-63.
24. Wilner O.I., Weizmann Y., Gill R., Lioubashevski O., Freeman R., Willner I. Enzyme cascades activated on topologically programmed DNA scaffolds. Nat Nanotechnol 2009, 4:249-254.
25. Niemeyer C.M. Semisynthetic DNA-protein conjugates for biosensing and nanofabrication. Angew Chem Int Ed 2010, 49:1200-1216.
26. Fu J.L., Liu M.H., Liu Y., Woodbury N.W., Yan H. Interenzyme substrate diffusion for an enzyme cascade organized on spatially addressable DNA nanostructures. J Am Chem Soc 2012, 134:5516-5519.
27. Fu Y., Zeng D., Chao J., Jin Y., Zhang Z., Liu H., Li D., Ma H., Huang Q., Gothelf K.V., Fan C. Single-step rapid assembly of DNA origami nanostructures for addressable nanoscale bioreactors. J Am Chem Soc 2013, 135:696-702.
28. You M.X., Wang R.W., Zhang X.B., Chen Y., Wang K.L., Peng L., Tan W.H. Photon-regulated DNA-enzymatic nanostructures by molecular assembly. ACS Nano 2011, 5:10090-10095.
29. Liu W.S., Wang L., Jiang R.R. Specific enzyme immobilization approaches and their application with nanomaterials. Top Catal 2012, 55:1146-1156.
30. Vong T., Schoffelen S., van Dongen S.F.M., van Beek T.A., Zuilhof H., van Hest J.C.M. A DNA-based strategy for dynamic positional enzyme immobilization inside fused silica microchannels. Chem Sci 2011, 2:1278-1285.
31. Khatwani S.L., Kang J.S., Mullen D.G., Hast M.A., Beese L.S., Distefano M.D., Taton T.A. Covalent protein-oligonucleotide conjugates by copper-free click reaction. Biorg Med Chem 2012, 20:4532-4539.
32. Amir L., Carnally S.A., Rayo J., Rosenne S., Melamed Yerushalmi S., Schlesinger O., Meijler M.M., Alfonta L. Surface display of a redox enzyme and its site-specific wiring to gold electrodes. J Am Chem Soc 2013, 135:70-73.
33. Mackenzie K.J., Francis M.B. Recyclable thermoresponsive polymer-cellulase bioconjugates for biomass depolymerization. J Am Chem Soc 2013, 135:293-300.
34. Roessl U., Nahalka J., Nidetzky B. Carrier-free immobilized enzymes for biocatalysis. Biotechnol Lett 2010, 32:341-350.
35. Sheldon R.A. Cross-linked enzyme aggregates as industrial biocatalysts. Org Process Res Dev 2011, 15:213-223.
36. Taboada-Puig R., Junghanns C., Demarche P., Moreira M.T., Feijoo G., Lema J.M., Agathos S.N. Combined cross-linked enzyme aggregates from versatile peroxidase and glucose oxidase: production, partial characterization and application for the elimination of endocrine disruptors. Bioresour Technol 2011, 102:6593-6599.
37. Vafiadi C., Topakas E., Christakopoulos P. Preparation of multipurpose cross-linked enzyme aggregates and their application to production of alkyl ferulates. J Mol Catal B: Enzym 2008, 54:35-41.
38. Scism R.A., Bachmann B.O. Five-component cascade synthesis of nucleotide analogues in an engineered self-immobilized enzyme aggregate. ChemBioChem 2010, 11:67-70.
39. Baumler H., Georgieva R. Coupled enzyme reactions in multicompartment microparticles. Biomacromolecules 2010, 11:1480-1487.
40. Dalal S., Kapoor M., Gupta M.N. Preparation and characterization of combi-cleas catalyzing multiple non-cascade reactions. J Mol Catal B: Enzym 2007, 44:128-132.
41. Moehlenbrock M.J., Toby T.K., Waheed A., Minteer S.D. Metabolon catalyzed pyruvate/air biofuel cell. J Am Chem Soc 2010, 132:6288-6289.
42. Shimada J., Maruyama T., Kitaoka M., Yoshinaga H., Nakano K., Kamiya N., Goto M. Programmable protein-protein conjugation via DNA-based self-assembly. Chem Commun 2012, 48:6226-6228.
43. Moehlenbrock M.J., Meredith M.T., Minteer S.D. Bioelectrocatalytic oxidation of glucose in CNT impregnated hydrogels: advantages of synthetic enzymatic metabolon formation. ACS Catal 2012, 2:17-25.
44. Matsumoto T., Tanaka T., Kondo A. Enzyme-mediated methodologies for protein modification and bioconjugate synthesis. Biotechnol J 2012, 7:1137-1146.
45. Hirakawa H., Kamiya N., Tanaka T., Nagamune T. Intramolecular electron transfer in a cytochrome p450cam system with a site-specific branched structure. Protein Eng Des Sel 2007, 20:453-459.
46. Minamihata K., Goto M., Kamiya N. Protein heteroconjugation by the peroxidase-catalyzed tyrosine coupling reaction. Bioconjug Chem 2011, 22:2332-2338.
47. Schoffelen S., Beekwilder J., Debets M.F., Bosch D., van Hest J.C.M. Construction of a multifunctional enzyme complex via the strain-promoted azide-alkyne cycloaddition. Bioconjug Chem 2013, 10.1021/bc400021j.