Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA

Frontiers in Ecology and the Environment

Volumn 8, Issue 5, 2010, Pages 233-238

  Chariton, Anthony A ^a   Court, Leon N ^a   Hartley, Diana M ^a   Colloff, Matthew J ^a   Hardy, Christopher M ^a  

^a CSIRO   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; CONSERVATION MANAGEMENT; CONSERVATION PLANNING; DECISION MAKING; DNA; ECOLOGICAL APPROACH; ENVIRONMENTAL ASSESSMENT; ENVIRONMENTAL MANAGEMENT; ESTUARINE SEDIMENT; EUKARYOTE; GENOMICS; HUMAN ACTIVITY; RESOURCE USE; SPECIES DIVERSITY; THEORETICAL STUDY;

EUKARYOTA;

EID: 77953353038     PISSN: 15409295     EISSN: 15409309     Source Type: Journal    
DOI: 10.1890/090115     Document Type: Article

References (21)

1. ANZECC/ARMCANZ (Australia New Zealand Environment and Conservation Council/Agriculture and Resource Management Council of Australia and New Zealand). 2000. Australian and New Zealand guidelines for fresh and marine water quality. Canberra, Australia: ANZECC/ARMCANZ.
2. Balmford A, Bennun L, ten Brink B, et al. 2005. The convention on biological diversity's 2010 target. Science 307: 212-213
3. Beesley PL, Ross GJ, and Wells A. 1998. Fauna of Australia, vol 5. Mollusca: a southern synthesis. Sydney, Australia: CSIRO Publishing and Australian Biological Resources Study.
4. Bellan-Santini D. 1980. Relationship between populations of amphipods and pollution. Mar Poll Bull 11: 224-227 (Pubitemid 10023406)
5. Chapman PM, McDonald BG, and Lawrence GS. 2002. Weight of evidence issues and frameworks for sediment quality (and other) assessments. Human Ecol Risk Assess 8: 1489-1516.
6. Coull BC and Chandler GT. 1992. Pollution and meiofauna: field, laboratory, and mesocosm studies. Oceanogr Mar Biol Ann Rev 30: 191-271.
7. Dinsdale EA, Edwards RA, Hall D, et al. 2008. Functional metagenomic profiling of nine biomes. Nature 452: 629-633
8. Eaton L. 2001. Development and validation of biocriteria using benthic macroinvertebrates for North Carolina estuarine waters. Mar Pol Bull 42: 23-30. (Pubitemid 32107037)
9. Goodsell PJ, Underwood AJ, and Chapman MG. 2009. Evidence necessary for taxa to be reliable indicators of environmental conditions or impacts. Mar Poll Bull 58: 323-331
10. Hardy CM, Krull ES, Hartley DM, and Oliver R. 2010. Carbon source accounting for fish using combined DNA and stable isotope analyses in a regulated lowland river weir pool. Mol Ecol 19: 197-212.
11. Hudson M. 2008. Sequencing breakthroughs for genomic ecology and evolutionary biology. Mol Ecol Resour 8: 3-17. (Pubitemid 350231221)
12. Johnston EL and Roberts DA. 2009. Contaminants reduce the richness and evenness of marine communities: a review and meta-analysis. Env Poll 157: 1745-1752
13. Kennedy AD and Jacoby AC. 1999. Biological indicators of marine environmental health: meiofauna - a neglected benthic component. Environ Monitor Assess 54: 47-68.
14. Liolios K, Mavromatis K, Tavernaraki N, and Kyrpides NC. 2008. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 36: D475-D479.
15. Markmann M and Tautz D. 2005. Reverse taxonomy: an approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences. Phil Trans R Soc B 360:1917-1924
16. Marshall MM, Amos RN, Henrich VC, and Rublee PA. 2008. Developing SSU rDNA metagenomic profiles of aquatic microbial communities for environmental assessments. Ecol Indic 8: 442-453
17. McTaggart SJ, Dudycha JL, Omilian A, and Crease TJ. 2007. Rates of recombination in the ribosomal DNA of apomictically propagated Daphnia obtusa lines. Genetics 175: 311-320
18. Sanger F, Nicklen S, and Coulson AR. 1977. Sequencing with chain-terminating inhibitors. P Natl Acad Sci USA 74: 5463-5467
19. Solis-Weiss V, Aleffi F, Bettoso N, et al. 2004. Effects of industrial and urban pollution on the benthic macrofauna in the Bay of Muggia (industrial port of Trieste, Italy). Sci Total Environ 328: 247-263
20. Telford MJ and Holland PW. 1997. Evolution of 28S ribosomal DNA in chaetognaths: duplicate genes and molecular phylogeny. J Mol Evol 44: 135-144
21. Venter JC, RemingtonK, Heidelberg JF, et al. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74. (Pubitemid 38451457)