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Volumn 10, Issue 4, 2010, Pages 666-676

Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure

Author keywords

Biodiversity; DNA barcoding; High throughput sequencing; Metagenetics; Nematode

Indexed keywords

ANIMALIA; METAZOA; NEMATODA;

EID: 77954025874     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2009.02819.x     Document Type: Article
Times cited : (89)

References (28)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 1997, 25:3389-3402.
    • (1997) Nucleic Acids Research , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3
  • 2
    • 0032697191 scopus 로고    scopus 로고
    • The influence of nematodes on below-ground processes in grassland ecosystems
    • Bardgett RD, Cook R, Yeates GW, Denton CS. The influence of nematodes on below-ground processes in grassland ecosystems. Plant and Soil 1999, 212:23-33.
    • (1999) Plant and Soil , vol.212 , pp. 23-33
    • Bardgett, R.D.1    Cook, R.2    Yeates, G.W.3    Denton, C.S.4
  • 3
    • 0025673209 scopus 로고    scopus 로고
    • Decay rates, nitrogen fluxes, and decomposer communities of single- and mixed-species foliar litter
    • Blair JM, Parmelee RW, Beare MH. Decay rates, nitrogen fluxes, and decomposer communities of single- and mixed-species foliar litter. Ecology 1999, 71:1976-1985.
    • (1999) Ecology , vol.71 , pp. 1976-1985
    • Blair, J.M.1    Parmelee, R.W.2    Beare, M.H.3
  • 4
    • 0031869216 scopus 로고    scopus 로고
    • Soil nematode biodiversity in terrestrial ecosystems
    • Boag B, Yeates GW. Soil nematode biodiversity in terrestrial ecosystems. Biodiversity and Conservation 1998, 7:617-630.
    • (1998) Biodiversity and Conservation , vol.7 , pp. 617-630
    • Boag, B.1    Yeates, G.W.2
  • 5
    • 0003712357 scopus 로고
    • Koninklijke Nederlandse Natuurhistorische Vereniging, Utrecht
    • Bongers T. De Nematoden van Nederland 1988, Koninklijke Nederlandse Natuurhistorische Vereniging, Utrecht
    • (1988) De Nematoden van Nederland
    • Bongers, T.1
  • 6
    • 0025660096 scopus 로고
    • The maturity index: an ecological measure of environmental disturbance based on nematode species composition
    • Bongers T. The maturity index: an ecological measure of environmental disturbance based on nematode species composition. Oecologia 1990, 83:14-19.
    • (1990) Oecologia , vol.83 , pp. 14-19
    • Bongers, T.1
  • 7
    • 0036137277 scopus 로고    scopus 로고
    • DNA sequence quality trimming and vector removal
    • Chou H, Holmes M. DNA sequence quality trimming and vector removal. Bioinformatics 2001, 12:1092-1104.
    • (2001) Bioinformatics , vol.12 , pp. 1092-1104
    • Chou, H.1    Holmes, M.2
  • 8
    • 77954738022 scopus 로고    scopus 로고
    • Ultra-deep 454 sequencing of the meiofaunal biosphere: practice, promises and pitfalls
    • Creer S, Fonseca VG, Porazinska DL. Ultra-deep 454 sequencing of the meiofaunal biosphere: practice, promises and pitfalls. Molecular Ecology 2010, 19:1-17.
    • (2010) Molecular Ecology , vol.19 , pp. 1-17
    • Creer, S.1    Fonseca, V.G.2    Porazinska, D.L.3
  • 10
    • 0020478245 scopus 로고
    • Molecular drive: a cohesive mode of species evolution
    • Dover GA. Molecular drive: a cohesive mode of species evolution. Nature 1982, 299:111-117.
    • (1982) Nature , vol.299 , pp. 111-117
    • Dover, G.A.1
  • 11
    • 33745595097 scopus 로고    scopus 로고
    • Using pyrosequencing to shed light on deep mine microbial ecology
    • doi: 10.1186/1471-2164-7-57
    • Edwards RA, Rodriguez-Brito B, Wegley L. Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 2006, 7:57. 10.1186/1471-2164-7-57, doi
    • (2006) BMC Genomics , vol.7 , pp. 57
    • Edwards, R.A.1    Rodriguez-Brito, B.2    Wegley, L.3
  • 14
    • 33748158280 scopus 로고    scopus 로고
    • Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades
    • Holterman M, van der Wurff A, van den Elsen S. Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. Molecular Biology and Evolution 2006, 23:1792-1800.
    • (2006) Molecular Biology and Evolution , vol.23 , pp. 1792-1800
    • Holterman, M.1    van der Wurff, A.2    van den Elsen, S.3
  • 15
    • 35148888609 scopus 로고    scopus 로고
    • Microbial population structure in the deep marine biosphere
    • Huber JA, Welch DBM, Morrison HG. Microbial population structure in the deep marine biosphere. Science 2007, 318:97-100.
    • (2007) Science , vol.318 , pp. 97-100
    • Huber, J.A.1    Welch, D.B.M.2    Morrison, H.G.3
  • 16
    • 34948842866 scopus 로고    scopus 로고
    • Accuracy and quality of massively parallel DNA pyrosequencing
    • doi: 10.1186/gb-2007-8-7-r143
    • Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biology 2007, 8. 10.1186/gb-2007-8-7-r143, doi
    • (2007) Genome Biology , vol.8
    • Huse, S.M.1    Huber, J.A.2    Morrison, H.G.3    Sogin, M.L.4    Welch, D.M.5
  • 17
    • 57149093416 scopus 로고    scopus 로고
    • Exploring microbial diversity and taxonomy using rRNA hypervariable tag sequencing
    • doi: 10.1371/journal.pgen.1000255
    • Huse SM, Dethlefsen L, Huber JA, Welch DM, Relman DA, Sogin ML. Exploring microbial diversity and taxonomy using rRNA hypervariable tag sequencing. PLoS Genetics 2008, 4. 10.1371/journal.pgen.1000255, doi
    • (2008) PLoS Genetics , vol.4
    • Huse, S.M.1    Dethlefsen, L.2    Huber, J.A.3    Welch, D.M.4    Relman, D.A.5    Sogin, M.L.6
  • 18
    • 0031890663 scopus 로고    scopus 로고
    • Biodiversity inventories, indicator taxa and effects of habitat modification in tropical forest
    • Lawton JH, Bignell DE, Bolton B. Biodiversity inventories, indicator taxa and effects of habitat modification in tropical forest. Nature 1998, 391:72-76.
    • (1998) Nature , vol.391 , pp. 72-76
    • Lawton, J.H.1    Bignell, D.E.2    Bolton, B.3
  • 21
    • 70349915703 scopus 로고    scopus 로고
    • Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity
    • Porazinska DL, Giblin-Davis RM, Farmerie W. Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity. Molecular Ecology Resources 2009, 9:1439-1450.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 1439-1450
    • Porazinska, D.L.1    Giblin-Davis, R.M.2    Farmerie, W.3
  • 23
    • 38449089943 scopus 로고    scopus 로고
    • Overview of gene structure
    • ed, WormBook, doi/
    • Spieth J, Lawson D. Overview of gene structure. WormBook 2006, http://dx.doi.org/10.1895/wormbook.1.65.1http://www.wormbook.org,In, ed,WormBook, doi/
    • (2006) WormBook
    • Spieth, J.1    Lawson, D.2
  • 24
    • 38549118536 scopus 로고    scopus 로고
    • C. elegans noncoding RNA genes
    • ed, WormBook, doi/
    • Stricklin SL, Griffith-Jones S, Eddy S. C. elegans noncoding RNA genes. WormBook 2005, http://dx.doi.org/10.1895/wormbook.1.1.1, http://www.wormbook.org, ed, WormBook,doi/
    • (2005) WormBook
    • Stricklin, S.L.1    Griffith-Jones, S.2    Eddy, S.3
  • 26
    • 62049086193 scopus 로고    scopus 로고
    • Molecular profiling of soil animal diversity in natural ecosystems: incongruence of molecular and morphological results
    • Wu T, Ayres E, Li G, Bardgett RD, Wall DH, Garey JR. Molecular profiling of soil animal diversity in natural ecosystems: incongruence of molecular and morphological results. Soil Biology and Biochemistry 2009, 41:849-857.
    • (2009) Soil Biology and Biochemistry , vol.41 , pp. 849-857
    • Wu, T.1    Ayres, E.2    Li, G.3    Bardgett, R.D.4    Wall, D.H.5    Garey, J.R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.