메뉴 건너뛰기




Volumn 25, Issue 6, 2013, Pages 2056-2069

Arabidopsis root initiation defective1, a DEAH-box RNA helicase involved in pre-mrna splicing, is essential for plant development

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; DEAD BOX PROTEIN; PRP22 PROTEIN, S CEREVISIAE; RID1 PROTEIN, ARABIDOPSIS; RNA HELICASE; RNA PRECURSOR; SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 84880961877     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.113.111922     Document Type: Article
Times cited : (54)

References (46)
  • 1
    • 80051724649 scopus 로고    scopus 로고
    • AtSAP130/AtSF3b-3 function is required for reproduction in Arabidopsis thaliana
    • Aki, S., Nakai, H., Aoyama, T., Oka, A., and Tsuge, T. (2011). AtSAP130/AtSF3b-3 function is required for reproduction in Arabidopsis thaliana. Plant Cell Physiol. 52: 1330-1339.
    • (2011) Plant Cell Physiol , vol.52 , pp. 1330-1339
    • Aki, S.1    Nakai, H.2    Aoyama, T.3    Oka, A.4    Tsuge, T.5
  • 2
    • 0028055069 scopus 로고
    • Assignment of 30 microsatellite loci to the linkage map of Arabidopsis
    • Bell, C.J., and Ecker, J.R. (1994). Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19: 137-144.
    • (1994) Genomics , vol.19 , pp. 137-144
    • Bell, C.J.1    Ecker, J.R.2
  • 3
    • 0001468848 scopus 로고    scopus 로고
    • Splicing of precursors to mRNAs by the spliceosomes
    • 2nd ed, R.F. Geste-land, T.R. Cech, and J.F. Atkins, eds (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press)
    • Burge, C.B., Tuschl, T., and Sharp, P.A. (1999). Splicing of precursors to mRNAs by the spliceosomes. In The RNA World, 2nd ed, R.F. Geste-land, T.R. Cech, and J.F. Atkins, eds (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press), pp. 525-560.
    • (1999) The RNA World , pp. 525-560
    • Burge, C.B.1    Tuschl, T.2    Sharp, P.A.3
  • 4
    • 61349087877 scopus 로고    scopus 로고
    • MERISTEMDEFECTIVE, an RS domain protein, is required for the correct meristem patterning and function in Arabidopsis
    • Casson, S.A., Topping, J.F., and Lindsey, K. (2009). MERISTEMDEFECTIVE, an RS domain protein, is required for the correct meristem patterning and function in Arabidopsis. Plant J. 57: 857-869.
    • (2009) Plant J , vol.57 , pp. 857-869
    • Casson, S.A.1    Topping, J.F.2    Lindsey, K.3
  • 5
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
    • (1998) Plant J , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 6
    • 0033216777 scopus 로고    scopus 로고
    • Technical advance: Spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein
    • Colón-Carmona, A., You, R., Haimovitch-Gal, T., and Doerner, P. (1999). Technical advance: Spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein. Plant J. 20: 503-508.
    • (1999) Plant J , vol.20 , pp. 503-508
    • Colón-Carmona, A.1    You, R.2    Haimovitch-Gal, T.3    Doerner, P.4
  • 7
    • 0026088747 scopus 로고
    • Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes
    • Company, M., Arenas, J., and Abelson, J. (1991). Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes. Nature 349: 487-493.
    • (1991) Nature , vol.349 , pp. 487-493
    • Company, M.1    Arenas, J.2    Abelson, J.3
  • 8
    • 34249067974 scopus 로고    scopus 로고
    • Segregation distortion in Arabidopsis gametophytic factor 1 (gfa1) mutants is caused by a deficiency of an essential RNA splicing factor
    • Coury, D.A., Zhang, C., Ko, A., Skaggs, M.I., Christensen, C.A., Drews, G.N., Feldmann, K.A., and Yadegiri, R. (2007). Segregation distortion in Arabidopsis gametophytic factor 1 (gfa1) mutants is caused by a deficiency of an essential RNA splicing factor. Sex. Plant Reprod. 20: 87-97.
    • (2007) Sex. Plant Reprod , vol.20 , pp. 87-97
    • Coury, D.A.1    Zhang, C.2    Ko, A.3    Skaggs, M.I.4    Christensen, C.A.5    Drews, G.N.6    Feldmann, K.A.7    Yadegiri, R.8
  • 9
    • 0024967250 scopus 로고
    • The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing
    • Goodall, G.J., and Filipowicz, W. (1989). The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing. Cell 58: 473-483.
    • (1989) Cell , vol.58 , pp. 473-483
    • Goodall, G.J.1    Filipowicz, W.2
  • 11
    • 33750062572 scopus 로고    scopus 로고
    • Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis
    • Herr, A.J., Molnàr, A., Jones, A., and Baulcombe, D.C. (2006). Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis. Proc. Natl. Acad. Sci. USA 103: 14994-15001.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 14994-15001
    • Herr, A.J.1    Molnàr, A.2    Jones, A.3    Baulcombe, D.C.4
  • 12
    • 0027650566 scopus 로고
    • A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCRbased markers
    • Konieczny, A., and Ausubel, F.M. (1993). A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCRbased markers. Plant J. 4: 403-410.
    • (1993) Plant J , vol.4 , pp. 403-410
    • Konieczny, A.1    Ausubel, F.M.2
  • 13
    • 0347382519 scopus 로고    scopus 로고
    • Genetic analysis of adventitious root formation with a novel series of temperature-sensitive mutants of Arabidopsis thaliana
    • Konishi, M., and Sugiyama, M. (2003). Genetic analysis of adventitious root formation with a novel series of temperature-sensitive mutants of Arabidopsis thaliana. Development 130: 5637-5647.
    • (2003) Development , vol.130 , pp. 5637-5647
    • Konishi, M.1    Sugiyama, M.2
  • 15
    • 58049196877 scopus 로고    scopus 로고
    • Role of Cajal bodies and nucleolus in the maturation of the U1 snRNP in Arabidopsis
    • Lorkovic, Z.J., and Barta, A. (2008). Role of Cajal bodies and nucleolus in the maturation of the U1 snRNP in Arabidopsis. PLoS ONE 3: e3989.
    • (2008) PLoS ONE , vol.3
    • Lorkovic, Z.J.1    Barta, A.2
  • 16
    • 3042803315 scopus 로고    scopus 로고
    • Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells
    • Lorkovic, Z.J., Hilscher, J., and Barta, A. (2004). Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells. Mol. Biol. Cell 15: 3233-3243.
    • (2004) Mol. Biol. Cell , vol.15 , pp. 3233-3243
    • Lorkovic, Z.J.1    Hilscher, J.2    Barta, A.3
  • 18
    • 37549039886 scopus 로고    scopus 로고
    • Differential requirement for the function of SRD2, an snRNA transcription activator, in various stages of plant development
    • Ohtani, M., Demura, T., and Sugiyama, M. (2008). Differential requirement for the function of SRD2, an snRNA transcription activator, in various stages of plant development. Plant Mol. Biol. 66: 303-314.
    • (2008) Plant Mol. Biol , vol.66 , pp. 303-314
    • Ohtani, M.1    Demura, T.2    Sugiyama, M.3
  • 19
    • 78651331354 scopus 로고    scopus 로고
    • Particular significance of SRD2-dependent snRNA accumulation in polarized pattern generation during lateral root development of Arabidopsis
    • Ohtani, M., Demura, T., and Sugiyama, M. (2010). Particular significance of SRD2-dependent snRNA accumulation in polarized pattern generation during lateral root development of Arabidopsis. Plant Cell Physiol. 51: 2002-2012.
    • (2010) Plant Cell Physiol , vol.51 , pp. 2002-2012
    • Ohtani, M.1    Demura, T.2    Sugiyama, M.3
  • 20
    • 27144476606 scopus 로고    scopus 로고
    • Involvement of SRD2-mediated activation of snRNA transcription in the control of cell proliferation competence in Arabidopsis
    • Ohtani, M., and Sugiyama, M. (2005). Involvement of SRD2-mediated activation of snRNA transcription in the control of cell proliferation competence in Arabidopsis. Plant J. 43: 479-490.
    • (2005) Plant J , vol.43 , pp. 479-490
    • Ohtani, M.1    Sugiyama, M.2
  • 21
    • 0029935326 scopus 로고    scopus 로고
    • A human RNA helicase-like protein, HRH1, facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome
    • Ohno, M., and Shimura, Y. (1996). A human RNA helicase-like protein, HRH1, facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. Genes Dev. 10: 997-1007.
    • (1996) Genes Dev , vol.10 , pp. 997-1007
    • Ohno, M.1    Shimura, Y.2
  • 22
    • 0031975651 scopus 로고    scopus 로고
    • Organogenic responses in tissue culture of srd mutants of Arabidopsis thaliana
    • Ozawa, S., Yasutani, I., Fukuda, H., Komamine, A., and Sugiyama, M. (1998). Organogenic responses in tissue culture of srd mutants of Arabidopsis thaliana. Development 125: 135-142.
    • (1998) Development , vol.125 , pp. 135-142
    • Ozawa, S.1    Yasutani, I.2    Fukuda, H.3    Komamine, A.4    Sugiyama, M.5
  • 23
    • 33847343883 scopus 로고    scopus 로고
    • Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: Regulation by hormones and stresses
    • Palusa, S.G., Ali, G.S., and Reddy, A.S.N. (2007). Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: Regulation by hormones and stresses. Plant J. 49: 1091-1107.
    • (2007) Plant J , vol.49 , pp. 1091-1107
    • Palusa, S.G.1    Ali, G.S.2    Reddy, A.S.N.3
  • 24
    • 56649117675 scopus 로고    scopus 로고
    • The assembly of a spliceosomal small nuclear ribonucleoprotein particle
    • Patel, S.B., and Bellini, M. (2008). The assembly of a spliceosomal small nuclear ribonucleoprotein particle. Nucleic Acids Res. 36: 6482-6493.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6482-6493
    • Patel, S.B.1    Bellini, M.2
  • 26
    • 53549086961 scopus 로고    scopus 로고
    • Vein patterning screens and the defectively organized tributaries mutants in Arabidopsis thaliana
    • Petricka, J.J., Clay, N.K., and Nelson, T.M. (2008). Vein patterning screens and the defectively organized tributaries mutants in Arabidopsis thaliana. Plant J. 56: 251-263.
    • (2008) Plant J , vol.56 , pp. 251-263
    • Petricka, J.J.1    Clay, N.K.2    Nelson, T.M.3
  • 27
    • 0036674269 scopus 로고    scopus 로고
    • Largescale proteomic analysis of the human spliceosome
    • Rappsilber, J., Ryder, U., Lamond, A.I., and Mann, M. (2002). Largescale proteomic analysis of the human spliceosome. Genome Res. 12: 1231-1245.
    • (2002) Genome Res , vol.12 , pp. 1231-1245
    • Rappsilber, J.1    Ryder, U.2    Lamond, A.I.3    Mann, M.4
  • 29
    • 0032055765 scopus 로고    scopus 로고
    • Prp22, a DExH-box RNA helicase, plays two distinct roles in yeast pre-mRNA splicing
    • Schwer, B., and Gross, C.H. (1998). Prp22, a DExH-box RNA helicase, plays two distinct roles in yeast pre-mRNA splicing. EMBO J. 17: 2086-2094.
    • (1998) EMBO J , vol.17 , pp. 2086-2094
    • Schwer, B.1    Gross, C.H.2
  • 30
    • 0034423411 scopus 로고    scopus 로고
    • RNA helicase dynamics in premRNA splicing
    • Schwer, B., and Meszaros, T. (2000). RNA helicase dynamics in premRNA splicing. EMBO J. 19: 6582-6591.
    • (2000) EMBO J , vol.19 , pp. 6582-6591
    • Schwer, B.1    Meszaros, T.2
  • 31
    • 84855281842 scopus 로고    scopus 로고
    • Nucleoli: Composition, function, and dynamics
    • Shaw, P., and Brown, J. (2012). Nucleoli: Composition, function, and dynamics. Plant Physiol. 158: 44-51.
    • (2012) Plant Physiol , vol.158 , pp. 44-51
    • Shaw, P.1    Brown, J.2
  • 32
  • 33
    • 0032489021 scopus 로고    scopus 로고
    • Mechanical devices of the spliceosome: Motors, clocks, springs, and things
    • Staley, J.P., and Guthrie, C. (1998). Mechanical devices of the spliceosome: Motors, clocks, springs, and things. Cell 92: 315-326.
    • (1998) Cell , vol.92 , pp. 315-326
    • Staley, J.P.1    Guthrie, C.2
  • 34
    • 79952616415 scopus 로고    scopus 로고
    • Knock-out mutations of Arabidopsis SmD3-b induce pleotropic phenotypes through altered transcript splicing
    • Swaraz, A.M., Park, Y.-D., and Hur, Y. (2011). Knock-out mutations of Arabidopsis SmD3-b induce pleotropic phenotypes through altered transcript splicing. Plant Sci. 180: 661-671.
    • (2011) Plant Sci , vol.180 , pp. 661-671
    • Swaraz, A.M.1    Park, Y.-D.2    Hur, Y.3
  • 35
    • 0034857262 scopus 로고    scopus 로고
    • DExD/H box RNA helicases: From generic motors to specific dissociation functions
    • Tanner, N.K., and Linder, P. (2001). DExD/H box RNA helicases: From generic motors to specific dissociation functions. Mol. Cell 8: 251-262.
    • (2001) Mol. Cell , vol.8 , pp. 251-262
    • Tanner, N.K.1    Linder, P.2
  • 36
    • 33845744361 scopus 로고    scopus 로고
    • Insights into nuclear organization in plants as revealed by the dynamic distribution of Arabidopsis SR splicing factors
    • Tillemans, V., Leponce, I., Rausin, G., Dispa, L., and Motte, P. (2006). Insights into nuclear organization in plants as revealed by the dynamic distribution of Arabidopsis SR splicing factors. Plant Cell 18: 3218-3234.
    • (2006) Plant Cell , vol.18 , pp. 3218-3234
    • Tillemans, V.1    Leponce, I.2    Rausin, G.3    Dispa, L.4    Motte, P.5
  • 37
    • 84871649090 scopus 로고    scopus 로고
    • How do 'housekeeping' genes control organogenesis?-Unexpected new findings on the role of housekeeping genes in cell and organ differentiation
    • Tsukaya, H., Byrne, M.E., Horiguchi, G., Sugiyama, M., Van Lijsebettens, M., and Lenhard, M. (2013). How do 'housekeeping' genes control organogenesis?-Unexpected new findings on the role of housekeeping genes in cell and organ differentiation. J. Plant Res. 126: 3-15.
    • (2013) J. Plant Res , vol.126 , pp. 3-15
    • Tsukaya, H.1    Byrne, M.E.2    Horiguchi, G.3    Sugiyama, M.4    van Lijsebettens, M.5    Lenhard, M.6
  • 38
    • 18044371378 scopus 로고    scopus 로고
    • The ASRG database: Identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing
    • Wang, B.-B., and Brendel, V. (2004). The ASRG database: Identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing. Genome Biol. 5: R102.
    • (2004) Genome Biol , vol.5
    • Wang, B.-B.1    Brendel, V.2
  • 39
    • 60349104299 scopus 로고    scopus 로고
    • The spliceosome: Design principles of a dynamic RNP machine
    • Wahl, M.C., Will, C.L., and Lührmann, R. (2009). The spliceosome: Design principles of a dynamic RNP machine. Cell 136: 701-718.
    • (2009) Cell , vol.136 , pp. 701-718
    • Wahl, M.C.1    Will, C.L.2    Lührmann, R.3
  • 40
    • 80051558192 scopus 로고    scopus 로고
    • Spliceosome structure and function. Cold Spring Harb
    • Will, C.L., and Lührmann, R. (2011). Spliceosome structure and function. Cold Spring Harb. Perspect. Biol. 3: a003707.
    • (2011) Perspect. Biol , vol.3
    • Will, C.L.1    Lührmann, R.2
  • 41
    • 73449139768 scopus 로고    scopus 로고
    • Tape-Arabidopsis Sandwich - A simpler Arabidopsis protoplast isolation method
    • Wu, F.-H., Shen, S.-C., Lee, L.-Y., Lee, S.-H., Chan, M.-T., and Lin, C.-S. (2009). Tape-Arabidopsis Sandwich - A simpler Arabidopsis protoplast isolation method. Plant Methods 5: 16.
    • (2009) Plant Methods , vol.5 , pp. 16
    • Wu, F.-H.1    Shen, S.-C.2    Lee, L.-Y.3    Lee, S.-H.4    Chan, M.-T.5    Lin, C.-S.6
  • 42
    • 0033961136 scopus 로고    scopus 로고
    • Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot
    • Wysocka-Diller, J.W., Helariutta, Y., Fukaki, H., Malamy, J.E., and Benfey, P.N. (2000). Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot. Development 127: 595-603.
    • (2000) Development , vol.127 , pp. 595-603
    • Wysocka-Diller, J.W.1    Helariutta, Y.2    Fukaki, H.3    Malamy, J.E.4    Benfey, P.N.5
  • 43
    • 63049139105 scopus 로고    scopus 로고
    • VAJ/GFA1/CLO is involved in the directional control of floral organ growth
    • Yagi, N., Takeda, S., Matsumoto, N., and Okada, K. (2009). VAJ/GFA1/CLO is involved in the directional control of floral organ growth. Plant Cell Physiol. 50: 515-527.
    • (2009) Plant Cell Physiol , vol.50 , pp. 515-527
    • Yagi, N.1    Takeda, S.2    Matsumoto, N.3    Okada, K.4
  • 44
    • 49249121142 scopus 로고    scopus 로고
    • Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots
    • Yamaguchi, M., Kubo, M., Fukuda, H., and Demura, T. (2008). Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots. Plant J. 55: 652-664.
    • (2008) Plant J , vol.55 , pp. 652-664
    • Yamaguchi, M.1    Kubo, M.2    Fukuda, H.3    Demura, T.4
  • 45
    • 77953212311 scopus 로고    scopus 로고
    • VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis
    • Yamaguchi, M., Ohtani, M., Mitsuda, N., Kubo, M., Ohme-Takagi, M., Fukuda, H., and Demura, T. (2010). VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis. Plant Cell 22: 1249-1263.
    • (2010) Plant Cell , vol.22 , pp. 1249-1263
    • Yamaguchi, M.1    Ohtani, M.2    Mitsuda, N.3    Kubo, M.4    Ohme-Takagi, M.5    Fukuda, H.6    Demura, T.7
  • 46
    • 0028051111 scopus 로고
    • Isolation of temperature-sensitive mutants of Arabidopsis thaliana that are defective in the redifferentiation of shoots
    • Yasutani, I., Ozawa, S., Nishida, T., Sugiyama, M., and Komamine, A. (1994). Isolation of temperature-sensitive mutants of Arabidopsis thaliana that are defective in the redifferentiation of shoots. Plant Physiol. 105: 815-822.
    • (1994) Plant Physiol , vol.105 , pp. 815-822
    • Yasutani, I.1    Ozawa, S.2    Nishida, T.3    Sugiyama, M.4    Komamine, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.