PARma: Identification of microRNA target sites in AGO-PAR-CLIP data

Genome Biology

Volumn 14, Issue 7, 2013, Pages

  Erhard, Florian ^a   Dölken, Lars ^b   Jaskiewicz, Lukasz ^c   Zimmer, Ralf ^a  

^a UNIVERSITY OF MUNICH   (Germany)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

Author keywords

EM algorithm; Generative model; MicroRNA; PAR CLIP

Indexed keywords

ARGONAUTE PROTEIN; MICRORNA; RIBONUCLEOSIDE;

ACCURACY; ARTICLE; BINDING AFFINITY; BINDING SITE; COMPUTER MODEL; DATA ANALYSIS; DATA ANALYSIS SOFTWARE; GENE CLUSTER; GENE FUNCTION; GENE IDENTIFICATION; HUMAN; INTERMETHOD COMPARISON; INVESTIGATIVE PROCEDURES; MOLECULAR DYNAMICS; NUCLEIC ACID ANALYSIS; PAR CLIP TECHNIQUE; PARMA ANALYSIS; PROCESS DEVELOPMENT; PROTEIN DETERMINATION; PROTEIN FUNCTION; RNA BINDING; RNA BINDING PROTEIN IMMUNOPRECIPITATION FOLLOWED BY CHIP ANALYSIS; SCORING SYSTEM; SINGLE NUCLEOTIDE POLYMORPHISM; VALIDATION PROCESS; ALGORITHM; B LYMPHOCYTE; BIOLOGICAL MODEL; CLUSTER ANALYSIS; COMPUTER PROGRAM; GENETICS; IMMUNOPRECIPITATION; METABOLISM; REPRODUCIBILITY;

ALGORITHMS; ARGONAUTE PROTEINS; B-LYMPHOCYTES; CLUSTER ANALYSIS; HUMANS; IMMUNOPRECIPITATION; MICRORNAS; MODELS, GENETIC; REPRODUCIBILITY OF RESULTS; RIBONUCLEOSIDES; SOFTWARE;

EID: 84880956561     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2013-14-7-r79     Document Type: Article

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