-
1
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S., and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biol. 11: R106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
2
-
-
23744471980
-
A protective role for the embryo surrounding region of the maize endosperm, as evidenced by the characterisation of ZmESR-6, a defensin gene specifically expressed in this region
-
Balandín, M., Royo, J., Gómez, E., Muniz, L.M., Molina, A., and Hueros, G. (2005). A protective role for the embryo surrounding region of the maize endosperm, as evidenced by the characterisation of ZmESR-6, a defensin gene specifically expressed in this region. Plant Mol. Biol. 58: 269-282.
-
(2005)
Plant Mol. Biol
, vol.58
, pp. 269-282
-
-
Balandín, M.1
Royo, J.2
Gómez, E.3
Muniz, L.M.4
Molina, A.5
Hueros, G.6
-
3
-
-
0036359902
-
Genomic imprinting during seed development
-
Baroux, C., Spillane, C., and Grossniklaus, U. (2002). Genomic imprinting during seed development. Adv. Genet. 46: 165-214.
-
(2002)
Adv. Genet
, vol.46
, pp. 165-214
-
-
Baroux, C.1
Spillane, C.2
Grossniklaus, U.3
-
4
-
-
27544473473
-
Quantitative trait loci analysis using the false discovery rate
-
Benjamini, Y., and Yekutieli, D. (2005). Quantitative trait loci analysis using the false discovery rate. Genetics 171: 783-790.
-
(2005)
Genetics
, vol.171
, pp. 783-790
-
-
Benjamini, Y.1
Yekutieli, D.2
-
5
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y., and Hochberg, H. (1995). Controlling the false discovery rate: A practical and powerful approach to multiple testing. J.R. Stat. Soc., B 57: 289-300.
-
(1995)
J.R. Stat. Soc., B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, H.2
-
6
-
-
70349565235
-
Parental memories shape seeds
-
Berger, F., and Chaudhury, A. (2009). Parental memories shape seeds. Trends Plant Sci. 14: 550-556.
-
(2009)
Trends Plant Sci
, vol.14
, pp. 550-556
-
-
Berger, F.1
Chaudhury, A.2
-
7
-
-
34548676152
-
Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants
-
Bomblies, K., Lempe, J., Epple, P., Warthmann, N., Lanz, C., Dangl, J.L., andWeigel, D. (2007). Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants. PLoS Biol. 5: e236.
-
(2007)
PLoS Biol
, vol.5
-
-
Bomblies, K.1
Lempe, J.2
Epple, P.3
Warthmann, N.4
Lanz, C.5
Dangl, J.L.6
Andweigel, D.7
-
8
-
-
84856569650
-
Hybrid incompatibility in Arabidopsis is determined by a multiple-locus genetic network
-
Burkart-Waco, D., Josefsson, C., Dilkes, B.R., Kozloff, N., Torjek, O., Meyer, R., Altmann, T., and Comai, L. (2012). Hybrid incompatibility in Arabidopsis is determined by a multiple-locus genetic network. Plant Physiol. 158: 801-812.
-
(2012)
Plant Physiol
, vol.158
, pp. 801-812
-
-
Burkart-Waco, D.1
Josefsson, C.2
Dilkes, B.R.3
Kozloff, N.4
Torjek, O.5
Meyer, R.6
Altmann, T.7
Comai, L.8
-
9
-
-
0037780969
-
The basis of natural and artificial postzygotic hybridization barriers in Arabidopsis species
-
Bushell, C., Spielman, M., and Scott, R.J. (2003). The basis of natural and artificial postzygotic hybridization barriers in Arabidopsis species. Plant Cell 15: 1430-1442.
-
(2003)
Plant Cell
, vol.15
, pp. 1430-1442
-
-
Bushell, C.1
Spielman, M.2
Scott, R.J.3
-
10
-
-
0028191408
-
Characterization of an Arabidopsis mutant that is nonresponsive to inducers of systemic acquired resistance
-
Cao, H., Bowling, S.A., Gordon, A.S., and Dong, X. (1994). Characterization of an Arabidopsis mutant that is nonresponsive to inducers of systemic acquired resistance. Plant Cell 6: 1583-1592.
-
(1994)
Plant Cell
, vol.6
, pp. 1583-1592
-
-
Cao, H.1
Bowling, S.A.2
Gordon, A.S.3
Dong, X.4
-
11
-
-
0030887626
-
Fertilization-independent seed development in Arabidopsis thaliana
-
Chaudhury, A.M., Ming, L., Miller, C., Craig, S., Dennis, E.S., and Peacock, W.J. (1997). Fertilization-independent seed development in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 94: 4223-4228.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 4223-4228
-
-
Chaudhury, A.M.1
Ming, L.2
Miller, C.3
Craig, S.4
Dennis, E.S.5
Peacock, W.J.6
-
12
-
-
75949117260
-
Molecular mechanisms of polyploidy and hybrid vigor
-
Chen, Z.J. (2010). Molecular mechanisms of polyploidy and hybrid vigor. Trends Plant Sci. 15: 57-71.
-
(2010)
Trends Plant Sci
, vol.15
, pp. 57-71
-
-
Chen, Z.J.1
-
13
-
-
33645389485
-
Mechanisms of genomic rearrangements and gene expression changes in plant polyploids
-
Chen, Z.J., and Ni, Z. (2006). Mechanisms of genomic rearrangements and gene expression changes in plant polyploids. Bioessays 28: 240-252.
-
(2006)
Bioessays
, vol.28
, pp. 240-252
-
-
Chen, Z.J.1
Ni, Z.2
-
14
-
-
77955041686
-
Multiple molecular mechanisms cause reproductive isolation between three yeast species
-
Chou, J.Y., Hung, Y.S., Lin, K.H., Lee, H.Y., and Leu, J.Y. (2010). Multiple molecular mechanisms cause reproductive isolation between three yeast species. PLoS Biol. 8: e1000432.
-
(2010)
PLoS Biol
, vol.8
-
-
Chou, J.Y.1
Hung, Y.S.2
Lin, K.H.3
Lee, H.Y.4
Leu, J.Y.5
-
15
-
-
77951726798
-
Speciation through cytonuclear incompatibility: Insights from yeast and implications for higher eukaryotes
-
Chou, J.Y., and Leu, J.Y. (2010). Speciation through cytonuclear incompatibility: Insights from yeast and implications for higher eukaryotes. Bioessays 32: 401-411.
-
(2010)
Bioessays
, vol.32
, pp. 401-411
-
-
Chou, J.Y.1
Leu, J.Y.2
-
16
-
-
0033824517
-
Genetic and epigenetic interactions in allopolyploid plants
-
Comai, L. (2000). Genetic and epigenetic interactions in allopolyploid plants. Plant Mol. Biol. 43: 387-399.
-
(2000)
Plant Mol. Biol
, vol.43
, pp. 387-399
-
-
Comai, L.1
-
17
-
-
0033789617
-
Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allotetraploids
-
Comai, L., Tyagi, A.P., Winter, K., Holmes-Davis, R., Reynolds, S.H., Stevens, Y., and Byers, B. (2000). Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allotetraploids. Plant Cell 12: 1551-1568.
-
(2000)
Plant Cell
, vol.12
, pp. 1551-1568
-
-
Comai, L.1
Tyagi, A.P.2
Winter, K.3
Holmes-Davis, R.4
Reynolds, S.H.5
Stevens, Y.6
Byers, B.7
-
18
-
-
21644453696
-
A differential dosage hypothesis for parental effects in seed development
-
Dilkes, B.P., and Comai, L. (2004). A differential dosage hypothesis for parental effects in seed development. Plant Cell 16: 3174-3180.
-
(2004)
Plant Cell
, vol.16
, pp. 3174-3180
-
-
Dilkes, B.P.1
Comai, L.2
-
19
-
-
84883798946
-
The maternally expressed WRKY transcription factor TTG2 controls lethality in interploidy crosses of Arabidopsis
-
Dilkes, B.P., Spielman, M., Weizbauer, R., Watson, B., Burkart-Waco, D., Scott, R.J., and Comai, L. (2008). The maternally expressed WRKY transcription factor TTG2 controls lethality in interploidy crosses of Arabidopsis. PLoS Biol. 6: 2707-2720.
-
(2008)
PLoS Biol
, vol.6
, pp. 2707-2720
-
-
Dilkes, B.P.1
Spielman, M.2
Weizbauer, R.3
Watson, B.4
Burkart-Waco, D.5
Scott, R.J.6
Comai, L.7
-
20
-
-
0001232092
-
Studies on hybrid sterility. II. Localization of sterility factors in Drosophila pseudoobscura hybrids
-
Dobzhansky, T. (1936). Studies on hybrid sterility. II. Localization of sterility factors in Drosophila pseudoobscura hybrids. Genetics 21: 113-135.
-
(1936)
Genetics
, vol.21
, pp. 113-135
-
-
Dobzhansky, T.1
-
21
-
-
25844459758
-
Maternal control of integument cell elongation and zygotic control of endosperm growth are coordinated to determine seed size in Arabidopsis
-
Garcia, D., Fitz Gerald, J.N., and Berger, F. (2005). Maternal control of integument cell elongation and zygotic control of endosperm growth are coordinated to determine seed size in Arabidopsis. Plant Cell 17: 52-60.
-
(2005)
Plant Cell
, vol.17
, pp. 52-60
-
-
Garcia, D.1
Fitz, G.J.N.2
Berger, F.3
-
22
-
-
0037391632
-
Arabidopsis haiku mutants reveal new controls of seed size by endosperm
-
Garcia, D., Saingery, V., Chambrier, P., Mayer, U., Jürgens, G., and Berger, F. (2003). Arabidopsis haiku mutants reveal new controls of seed size by endosperm. Plant Physiol. 131: 1661-1670.
-
(2003)
Plant Physiol
, vol.131
, pp. 1661-1670
-
-
Garcia, D.1
Saingery, V.2
Chambrier, P.3
Mayer, U.4
Jürgens, G.5
Berger, F.6
-
23
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring, M., Bubb, K.L., and Henikoff, S. (2009). Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 324: 1447-1451.
-
(2009)
Science
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.L.2
Henikoff, S.3
-
24
-
-
2942651120
-
Imprinting and seed development
-
Gehring, M., Choi, Y., and Fischer, R.L. (2004). Imprinting and seed development. Plant Cell 16 (Suppl): S203-S213.
-
(2004)
Plant Cell
, vol.16
, Issue.SUPPL.
-
-
Gehring, M.1
Choi, Y.2
Fischer, R.L.3
-
25
-
-
0038141780
-
Imprinting in the endosperm: A possible role in preventing wide hybridization
-
Gutierrez-Marcos, J.F., Pennington, P.D., Costa, L.M., and Dickinson, H.G. (2003). Imprinting in the endosperm: a possible role in preventing wide hybridization. Philos. Trans. R. Soc. Lond. B Biol. Sci. 358: 1105-1111.
-
(2003)
Philos. Trans. R. Soc. Lond. B Biol. Sci
, vol.358
, pp. 1105-1111
-
-
Gutierrez-Marcos, J.F.1
Pennington, P.D.2
Costa, L.M.3
Dickinson, H.G.4
-
26
-
-
70449588694
-
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids
-
Ha, M., Lu, J., Tian, L., Ramachandran, V., Kasschau, K.D., Chapman, E.J., Carrington, J.C., Chen, X., Wang, X.J., and Chen, Z.J. (2009). Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proc. Natl. Acad. Sci. USA 106: 17835-17840.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 17835-17840
-
-
Ha, M.1
Lu, J.2
Tian, L.3
Ramachandran, V.4
Kasschau, K.D.5
Chapman, E.J.6
Carrington, J.C.7
Chen, X.8
Wang, X.J.9
Chen, Z.J.10
-
27
-
-
0001968978
-
Genomic imprinting in endosperm: Its effects on seed development in crosses between species and between different ploidies of the same species, and its implications for the evolution of apomixis
-
Haig, D., and Westoby, M. (1991). Genomic imprinting in endosperm: Its effects on seed development in crosses between species and between different ploidies of the same species, and its implications for the evolution of apomixis. Phil. Trans. R. Soc. Lond. B. 333: Issue 1266, 1-13.
-
(1991)
Phil. Trans. R. Soc. Lond. B
, vol.333
, Issue.1266
, pp. 1-13
-
-
Haig, D.1
Westoby, M.2
-
28
-
-
34548395815
-
Towards the molecular basis of heterosis
-
Hochholdinger, F., and Hoecker, N. (2007). Towards the molecular basis of heterosis. Trends Plant Sci. 12: 427-432.
-
(2007)
Trends Plant Sci
, vol.12
, pp. 427-432
-
-
Hochholdinger, F.1
Hoecker, N.2
-
29
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, W., Sherman, B.T., and Lempicki, R.A. (2009a). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4: 44-57.
-
(2009)
Nat. Protoc
, vol.4
, pp. 44-57
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
30
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang, W., Sherman, B.T., and Lempicki, R.A. (2009b). Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37: 1-13.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1-13
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
31
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang, X., and Madan, A. (1999). CAP3: A DNA sequence assembly program. Genome Res. 9: 868-877.
-
(1999)
Genome Res
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
32
-
-
72049104777
-
Rin4 causes hybrid necrosis and race-specific resistance in an interspecific lettuce hybrid
-
Jeuken, M.J., Zhang, N.W., McHale, L.K., Pelgrom, K., den Boer, E., Lindhout, P., Michelmore, R.W., Visser, R.G., and Niks, R.E. (2009). Rin4 causes hybrid necrosis and race-specific resistance in an interspecific lettuce hybrid. Plant Cell 21: 3368-3378.
-
(2009)
Plant Cell
, vol.21
, pp. 3368-3378
-
-
Jeuken, M.J.1
Zhang, N.W.2
McHale, L.K.3
Pelgrom, K.4
den Boer, E.5
Lindhout, P.6
Michelmore, R.W.7
Visser, R.G.8
Niks, R.E.9
-
33
-
-
0035983845
-
TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor
-
Johnson, C.S., Kolevski, B., and Smyth, D.R. (2002). TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor. Plant Cell 14: 1359-1375.
-
(2002)
Plant Cell
, vol.14
, pp. 1359-1375
-
-
Johnson, C.S.1
Kolevski, B.2
Smyth, D.R.3
-
34
-
-
33745668459
-
Parent-dependent loss of gene silencing during interspecies hybridization
-
Josefsson, C., Dilkes, B., and Comai, L. (2006). Parent-dependent loss of gene silencing during interspecies hybridization. Curr. Biol. 16: 1322-1328.
-
(2006)
Curr. Biol
, vol.16
, pp. 1322-1328
-
-
Josefsson, C.1
Dilkes, B.2
Comai, L.3
-
35
-
-
33745458520
-
Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting
-
Jullien, P.E., Kinoshita, T., Ohad, N., and Berger, F. (2006). Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting. Plant Cell 18: 1360-1372.
-
(2006)
Plant Cell
, vol.18
, pp. 1360-1372
-
-
Jullien, P.E.1
Kinoshita, T.2
Ohad, N.3
Berger, F.4
-
36
-
-
48249142888
-
The AGL62 MADS domain protein regulates cellularization during endosperm development in Arabidopsis
-
Kang, I.H., Steffen, J.G., Portereiko, M.F., Lloyd, A., and Drews, G.N. (2008). The AGL62 MADS domain protein regulates cellularization during endosperm development in Arabidopsis. Plant Cell 20: 635-647.
-
(2008)
Plant Cell
, vol.20
, pp. 635-647
-
-
Kang, I.H.1
Steffen, J.G.2
Portereiko, M.F.3
Lloyd, A.4
Drews, G.N.5
-
37
-
-
0037226595
-
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
-
Kashkush, K., Feldman, M., and Levy, A.A. (2003). Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat. Genet. 33: 102-106.
-
(2003)
Nat. Genet
, vol.33
, pp. 102-106
-
-
Kashkush, K.1
Feldman, M.2
Levy, A.A.3
-
38
-
-
84864360669
-
Epigenetic mechanisms underlying genomic imprinting in plants
-
Köhler, C., Wolff, P., and Spillane, C. (2012). Epigenetic mechanisms underlying genomic imprinting in plants. Annu. Rev. Plant Biol. 63: 331-352.
-
(2012)
Annu. Rev. Plant Biol
, vol.63
, pp. 331-352
-
-
Köhler, C.1
Wolff, P.2
Spillane, C.3
-
39
-
-
53749106965
-
RETARDED GROWTH OF EMBRYO1, a new basic helix-loop-helix protein, expresses in endosperm to control embryo growth
-
Kondou, Y., Nakazawa, M., Kawashima, M., Ichikawa, T., Yoshizumi, T., Suzuki, K., Ishikawa, A., Koshi, T., Matsui, R., Muto, S., and Matsui, M. (2008). RETARDED GROWTH OF EMBRYO1, a new basic helix-loop-helix protein, expresses in endosperm to control embryo growth. Plant Physiol. 147: 1924-1935.
-
(2008)
Plant Physiol
, vol.147
, pp. 1924-1935
-
-
Kondou, Y.1
Nakazawa, M.2
Kawashima, M.3
Ichikawa, T.4
Yoshizumi, T.5
Suzuki, K.6
Ishikawa, A.7
Koshi, T.8
Matsui, R.9
Muto, S.10
Matsui, M.11
-
40
-
-
43449129747
-
Heterosis in the freezing tolerance, and sugar and flavonoid contents of crosses between Arabidopsis thaliana accessions of widely varying freezing tolerance
-
Korn, M., Peterek, S., Mock, H.P., Heyer, A.G., and Hincha, D.K. (2008). Heterosis in the freezing tolerance, and sugar and flavonoid contents of crosses between Arabidopsis thaliana accessions of widely varying freezing tolerance. Plant Cell Environ. 31: 813-827.
-
(2008)
Plant Cell Environ
, vol.31
, pp. 813-827
-
-
Korn, M.1
Peterek, S.2
Mock, H.P.3
Heyer, A.G.4
Hincha, D.K.5
-
41
-
-
77951769145
-
The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato
-
Krieger, U., Lippman, Z.B., and Zamir, D. (2010). The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato. Nat. Genet. 42: 459-463.
-
(2010)
Nat. Genet
, vol.42
, pp. 459-463
-
-
Krieger, U.1
Lippman, Z.B.2
Zamir, D.3
-
42
-
-
0037177596
-
A tomato cysteine protease required for Cf-2-dependent disease resistance and suppression of autonecrosis
-
Krüger, J., Thomas, C.M., Golstein, C., Dixon, M.S., Smoker, M., Tang, S., Mulder, L., and Jones, J.D. (2002). A tomato cysteine protease required for Cf-2-dependent disease resistance and suppression of autonecrosis. Science 296: 744-747.
-
(2002)
Science
, vol.296
, pp. 744-747
-
-
Krüger, J.1
Thomas, C.M.2
Golstein, C.3
Dixon, M.S.4
Smoker, M.5
Tang, S.6
Mulder, L.7
Jones, J.D.8
-
43
-
-
77952382638
-
Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors
-
Le, B.H., et al. (2010). Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors. Proc. Natl. Acad. Sci. USA 107: 8063-8070.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 8063-8070
-
-
Le, B.H.1
-
44
-
-
33646723046
-
Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis
-
Levesque, M.P., Vernoux, T., Busch, W., Cui, H., Wang, J.Y., Blilou, I., Hassan, H., Nakajima, K., Matsumoto, N., Lohmann, J.U., Scheres, B., and Benfey, P.N. (2006). Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. PLoS Biol. 4: e143.
-
(2006)
PLoS Biol
, vol.4
-
-
Levesque, M.P.1
Vernoux, T.2
Busch, W.3
Cui, H.4
Wang, J.Y.5
Blilou, I.6
Hassan, H.7
Nakajima, K.8
Matsumoto, N.9
Lohmann, J.U.10
Scheres, B.11
Benfey, P.N.12
-
45
-
-
84966178706
-
Unilateral interspecific incompatibility in flowering plants
-
Lewis, D., and Crowe, L.K. (1958). Unilateral interspecific incompatibility in flowering plants. Heredity 12: 233-256.
-
(1958)
Heredity
, vol.12
, pp. 233-256
-
-
Lewis, D.1
Crowe, L.K.2
-
46
-
-
84872190480
-
Tobacco TTG2 suppresses resistance to pathogens by sequestering NPR1 from the nucleus
-
Li, B., Gao, R., Cui, R., Lu, B., Li, X., Zhao, Y., You, Z., Tian, S., and Dong, H. (2012). Tobacco TTG2 suppresses resistance to pathogens by sequestering NPR1 from the nucleus. J. Cell Sci. 125: 4913-4922.
-
(2012)
J. Cell Sci
, vol.125
, pp. 4913-4922
-
-
Li, B.1
Gao, R.2
Cui, R.3
Lu, B.4
Li, X.5
Zhao, Y.6
You, Z.7
Tian, S.8
Dong, H.9
-
47
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., and Durbin, R. (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
48
-
-
33846543858
-
Heterosis: Revisiting the magic
-
Lippman, Z.B., and Zamir, D. (2007). Heterosis: Revisiting the magic. Trends Genet. 23: 60-66.
-
(2007)
Trends Genet
, vol.23
, pp. 60-66
-
-
Lippman, Z.B.1
Zamir, D.2
-
49
-
-
84859464802
-
Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds
-
Lu, J.Z., Zhang, C., Baulcombe, D.C., and Chen, Z.J. (2012). Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds. Proc. Natl. Acad. Sci. USA 109: 5529-5534.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 5529-5534
-
-
Lu, J.Z.1
Zhang, C.2
Baulcombe, D.C.3
Chen, Z.J.4
-
50
-
-
0034641701
-
Expression and parent-of-origin effects for FIS2, MEA, and FIE in the endosperm and embryo of developing Arabidopsis seeds
-
Luo, M., Bilodeau, P., Dennis, E.S., Peacock, W.J., and Chaudhury, A. (2000). Expression and parent-of-origin effects for FIS2, MEA, and FIE in the endosperm and embryo of developing Arabidopsis seeds. Proc. Natl. Acad. Sci. USA 97: 10637-10642.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 10637-10642
-
-
Luo, M.1
Bilodeau, P.2
Dennis, E.S.3
Peacock, W.J.4
Chaudhury, A.5
-
51
-
-
28444461439
-
MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis
-
Luo, M., Dennis, E.S., Berger, F., Peacock, W.J., and Chaudhury, A. (2005). MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis. Proc. Natl. Acad. Sci. USA 102: 17531-17536.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 17531-17536
-
-
Luo, M.1
Dennis, E.S.2
Berger, F.3
Peacock, W.J.4
Chaudhury, A.5
-
52
-
-
12844257041
-
Genomic changes in synthetic Arabidopsis polyploids
-
Madlung, A., Tyagi, A.P., Watson, B., Jiang, H., Kagochi, T., Doerge, R.W., Martienssen, R., and Comai, L. (2005). Genomic changes in synthetic Arabidopsis polyploids. Plant J. 41: 221-230.
-
(2005)
Plant J
, vol.41
, pp. 221-230
-
-
Madlung, A.1
Tyagi, A.P.2
Watson, B.3
Jiang, H.4
Kagochi, T.5
Doerge, R.W.6
Martienssen, R.7
Comai, L.8
-
53
-
-
0034527676
-
Genes normally expressed in the endosperm are expressed at early stages of microspore embryogenesis in maize
-
Magnard, J.L., Le Deunff, E., Domenech, J., Rogowsky, P.M., Testillano, P.S., Rougier, M., Risueño, M.C., Vergne, P., and Dumas, C. (2000). Genes normally expressed in the endosperm are expressed at early stages of microspore embryogenesis in maize. Plant Mol. Biol. 44: 559-574.
-
(2000)
Plant Mol. Biol
, vol.44
, pp. 559-574
-
-
Magnard, J.L.1
Le Deunff, E.2
Domenech, J.3
Rogowsky, P.M.4
Testillano, P.S.5
Rougier, M.6
Risueño, M.C.7
Vergne, P.8
Dumas, C.9
-
54
-
-
80755169477
-
The genetics of hybrid incompatibilities
-
Maheshwari, S., and Barbash, D.A. (2011). The genetics of hybrid incompatibilities. Annu. Rev. Genet. 45: 331-355.
-
(2011)
Annu. Rev. Genet
, vol.45
, pp. 331-355
-
-
Maheshwari, S.1
Barbash, D.A.2
-
55
-
-
79952358199
-
Cysteine-rich peptides (CRPs) mediate diverse aspects of cell-cell communication in plant reproduction and development
-
Marshall, E., Costa, L.M., and Gutierrez-Marcos, J. (2011). Cysteine-rich peptides (CRPs) mediate diverse aspects of cell-cell communication in plant reproduction and development. J. Exp. Bot. 62: 1677-1686.
-
(2011)
J. Exp. Bot
, vol.62
, pp. 1677-1686
-
-
Marshall, E.1
Costa, L.M.2
Gutierrez-Marcos, J.3
-
56
-
-
77950948347
-
Heterochromatin, small RNA and postfertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis
-
Martienssen, R.A. (2010). Heterochromatin, small RNA and postfertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis. New Phytol. 186: 46-53.
-
(2010)
New Phytol
, vol.186
, pp. 46-53
-
-
Martienssen, R.A.1
-
57
-
-
0021715393
-
The significance of responses of the genome to challenge
-
McClintock, B. (1984). The significance of responses of the genome to challenge. Science 226: 792-801.
-
(1984)
Science
, vol.226
, pp. 792-801
-
-
McClintock, B.1
-
58
-
-
80053562293
-
Autoimmune response and repression of mitotic cell division occur in inter-specific crosses between tetraploid wheat and Aegilops tauschii Coss. that show low temperature-induced hybrid necrosis
-
Mizuno, N., Shitsukawa, N., Hosogi, N., Park, P., and Takumi, S. (2011). Autoimmune response and repression of mitotic cell division occur in inter-specific crosses between tetraploid wheat and Aegilops tauschii Coss. that show low temperature-induced hybrid necrosis. Plant J. 68: 114-128.
-
(2011)
Plant J
, vol.68
, pp. 114-128
-
-
Mizuno, N.1
Shitsukawa, N.2
Hosogi, N.3
Park, P.4
Takumi, S.5
-
59
-
-
84859619396
-
The MADS box genes SEEDSTICK and ARABIDOPSIS Bsister play a maternal role in fertilization and seed development
-
Mizzotti, C., Mendes, M.A., Caporali, E., Schnittger, A., Kater, M.M., Battaglia, R., and Colombo, L. (2012). The MADS box genes SEEDSTICK and ARABIDOPSIS Bsister play a maternal role in fertilization and seed development. Plant J. 70: 409-420.
-
(2012)
Plant J
, vol.70
, pp. 409-420
-
-
Mizzotti, C.1
Mendes, M.A.2
Caporali, E.3
Schnittger, A.4
Kater, M.M.5
Battaglia, R.6
Colombo, L.7
-
60
-
-
67650461957
-
Uniparental expression of PolIVdependent siRNAs in developing endosperm of Arabidopsis
-
Mosher, R.A., Melnyk, C.W., Kelly, K.A., Dunn, R.M., Studholme, D.J., and Baulcombe, D.C. (2009). Uniparental expression of PolIVdependent siRNAs in developing endosperm of Arabidopsis. Nature 460: 283-286.
-
(2009)
Nature
, vol.460
, pp. 283-286
-
-
Mosher, R.A.1
Melnyk, C.W.2
Kelly, K.A.3
Dunn, R.M.4
Studholme, D.J.5
Baulcombe, D.C.6
-
61
-
-
65849291758
-
NPR1 in plant defense: It's not over 'til it's turned over
-
Mukhtar, M.S., Nishimura, M.T., and Dangl, J. (2009). NPR1 in plant defense: It's not over 'til it's turned over. Cell 137: 804-806.
-
(2009)
Cell
, vol.137
, pp. 804-806
-
-
Mukhtar, M.S.1
Nishimura, M.T.2
Dangl, J.3
-
62
-
-
0002101476
-
Isolating Mechanisms, Evolution and Temperature
-
Tempe, Arizona: Jaques Cattell Press
-
Muller, H. (1942). Isolating Mechanisms, Evolution and Temperature. In Biological Symposia. (Tempe, Arizona: Jaques Cattell Press) pp. 71-125.
-
(1942)
Biological Symposia
, pp. 71-125
-
-
Muller, H.1
-
63
-
-
84862777313
-
Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility
-
Ng, D.W., Lu, J., and Chen, Z.J. (2012). Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility. Curr. Opin. Plant Biol. 15: 154-161.
-
(2012)
Curr. Opin. Plant Biol
, vol.15
, pp. 154-161
-
-
Ng, D.W.1
Lu, J.2
Chen, Z.J.3
-
64
-
-
44649083780
-
Retrotransposition as a source of new promoters
-
Okamura, K., and Nakai, K. (2008). Retrotransposition as a source of new promoters. Mol. Biol. Evol. 25: 1231-1238.
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 1231-1238
-
-
Okamura, K.1
Nakai, K.2
-
65
-
-
0028942011
-
The population genetics of speciation: The evolution of hybrid incompatibilities
-
Orr, H.A. (1995). The population genetics of speciation: The evolution of hybrid incompatibilities. Genetics 139: 1805-1813.
-
(1995)
Genetics
, vol.139
, pp. 1805-1813
-
-
Orr, H.A.1
-
66
-
-
0026889350
-
The isolation and characterisation of the tapetum-specific Arabidopsis thaliana A9 gene
-
Paul, W., Hodge, R., Smartt, S., Draper, J., and Scott, R. (1992). The isolation and characterisation of the tapetum-specific Arabidopsis thaliana A9 gene. Plant Mol. Biol. 19: 611-622.
-
(1992)
Plant Mol. Biol
, vol.19
, pp. 611-622
-
-
Paul, W.1
Hodge, R.2
Smartt, S.3
Draper, J.4
Scott, R.5
-
67
-
-
80053571297
-
Clustering of pathogen-response genes in the genome of Arabidopsis thaliana
-
Postnikova, O.A., Minakova, N.Y., Boutanaev, A.M., and Nemchinov, L.G. (2011). Clustering of pathogen-response genes in the genome of Arabidopsis thaliana. J. Integr. Plant Biol. 53: 824-834.
-
(2011)
J. Integr. Plant Biol
, vol.53
, pp. 824-834
-
-
Postnikova, O.A.1
Minakova, N.Y.2
Boutanaev, A.M.3
Nemchinov, L.G.4
-
68
-
-
0038705142
-
Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold
-
Ratcliffe, O.J., Kumimoto, R.W., Wong, B.J., and Riechmann, J.L. (2003). Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold. Plant Cell 15: 1159-1169.
-
(2003)
Plant Cell
, vol.15
, pp. 1159-1169
-
-
Ratcliffe, O.J.1
Kumimoto, R.W.2
Wong, B.J.3
Riechmann, J.L.4
-
70
-
-
84858754773
-
Retrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes
-
Sakai, H., Mizuno, H., Kawahara, Y., Wakimoto, H., Ikawa, H., Kawahigashi, H., Kanamori, H., Matsumoto, T., Itoh, T., and Gaut, B.S. (2011). Retrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes. Genome Biol. Evol. 3: 1357-1368.
-
(2011)
Genome Biol. Evol
, vol.3
, pp. 1357-1368
-
-
Sakai, H.1
Mizuno, H.2
Kawahara, Y.3
Wakimoto, H.4
Ikawa, H.5
Kawahigashi, H.6
Kanamori, H.7
Matsumoto, T.8
Itoh, T.9
Gaut, B.S.10
-
71
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M., Schölkopf, B., Weigel, D., and Lohmann, J.U. (2005). A gene expression map of Arabidopsis thaliana development. Nat. Genet. 37: 501-506.
-
(2005)
Nat. Genet
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Schölkopf, B.7
Weigel, D.8
Lohmann, J.U.9
-
72
-
-
0031670487
-
Parent-of-origin effects on seed development in Arabidopsis thaliana
-
Scott, R.J., Spielman, M., Bailey, J., and Dickinson, H.G. (1998). Parent-of-origin effects on seed development in Arabidopsis thaliana. Development 125: 3329-3341.
-
(1998)
Development
, vol.125
, pp. 3329-3341
-
-
Scott, R.J.1
Spielman, M.2
Bailey, J.3
Dickinson, H.G.4
-
73
-
-
0033079140
-
The Arabidopsis ssi1 mutation restores pathogenesis-related gene expression in npr1 plants and renders defensin gene expression salicylic acid dependent
-
Shah, J., Kachroo, P., and Klessig, D.F. (1999). The Arabidopsis ssi1 mutation restores pathogenesis-related gene expression in npr1 plants and renders defensin gene expression salicylic acid dependent. Plant Cell 11: 191-206.
-
(1999)
Plant Cell
, vol.11
, pp. 191-206
-
-
Shah, J.1
Kachroo, P.2
Klessig, D.F.3
-
74
-
-
0031032430
-
Characterization of a salicylic acid-insensitive mutant (sai1) of Arabidopsis thaliana, identified in a selective screen utilizing the SA-inducible expression of the tms2 gene
-
Shah, J., Tsui, F., and Klessig, D.F. (1997). Characterization of a salicylic acid-insensitive mutant (sai1) of Arabidopsis thaliana, identified in a selective screen utilizing the SA-inducible expression of the tms2 gene. Mol. Plant Microbe Interact. 10: 69-78.
-
(1997)
Mol. Plant Microbe Interact
, vol.10
, pp. 69-78
-
-
Shah, J.1
Tsui, F.2
Klessig, D.F.3
-
75
-
-
0034866855
-
Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
-
Shaked, H., Kashkush, K., Ozkan, H., Feldman, M., and Levy, A.A. (2001). Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13: 1749-1759.
-
(2001)
Plant Cell
, vol.13
, pp. 1749-1759
-
-
Shaked, H.1
Kashkush, K.2
Ozkan, H.3
Feldman, M.4
Levy, A.A.5
-
76
-
-
0029851292
-
Embryo rescue in plants-A review
-
Sharma, D., Kaur, R., and Kumar, K. (1996). Embryo rescue in plants-A review. Euphytica 89: 325-337.
-
(1996)
Euphytica
, vol.89
, pp. 325-337
-
-
Sharma, D.1
Kaur, R.2
Kumar, K.3
-
77
-
-
79952267014
-
Genome-wide transcript profiling of endosperm without paternal contribution identifies parent-of-origin-dependent regulation of AGAMOUS-LIKE36
-
Shirzadi, R., Andersen, E.D., Bjerkan, K.N., Gloeckle, B.M., Heese, M., Ungru, A., Winge, P., Koncz, C., Aalen, R.B., Schnittger, A., and Grini, P.E. (2011). Genome-wide transcript profiling of endosperm without paternal contribution identifies parent-of-origin-dependent regulation of AGAMOUS-LIKE36. PLoS Genet. 7: e1001303.
-
(2011)
PLoS Genet
, vol.7
-
-
Shirzadi, R.1
Andersen, E.D.2
Bjerkan, K.N.3
Gloeckle, B.M.4
Heese, M.5
Ungru, A.6
Winge, P.7
Koncz, C.8
Aalen, R.B.9
Schnittger, A.10
Grini, P.E.11
-
78
-
-
84857189983
-
Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs
-
Shivaprasad, P.V., Dunn, R.M., Santos, B.A., Bassett, A., and Baulcombe, D.C. (2012). Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs. EMBO J. 31: 257-266.
-
(2012)
EMBO J
, vol.31
, pp. 257-266
-
-
Shivaprasad, P.V.1
Dunn, R.M.2
Santos, B.A.3
Bassett, A.4
Baulcombe, D.C.5
-
79
-
-
65849096454
-
Proteasome-mediated turnover of the transcription coactivator NPR1 plays dual roles in regulating plant immunity
-
Spoel, S.H., Mou, Z., Tada, Y., Spivey, N.W., Genschik, P., and Dong, X. (2009). Proteasome-mediated turnover of the transcription coactivator NPR1 plays dual roles in regulating plant immunity. Cell 137: 860-872.
-
(2009)
Cell
, vol.137
, pp. 860-872
-
-
Spoel, S.H.1
Mou, Z.2
Tada, Y.3
Spivey, N.W.4
Genschik, P.5
Dong, X.6
-
80
-
-
33847701258
-
Allelic variation and heterosis in maize: How do two halves make more than a whole?
-
Springer, N.M., and Stupar, R.M. (2007). Allelic variation and heterosis in maize: How do two halves make more than a whole? Genome Res. 17: 264-275.
-
(2007)
Genome Res
, vol.17
, pp. 264-275
-
-
Springer, N.M.1
Stupar, R.M.2
-
81
-
-
33750018038
-
Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation
-
Ungerer, M.C., Strakosh, S.C., and Zhen, Y. (2006). Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation. Curr. Biol. 16: R872-R873.
-
(2006)
Curr. Biol
, vol.16
-
-
Ungerer, M.C.1
Strakosh, S.C.2
Zhen, Y.3
-
82
-
-
67649884531
-
Dosage-dependent deregulation of an AGAMOUSLIKE gene cluster contributes to interspecific incompatibility
-
Walia, H., Josefsson, C., Dilkes, B., Kirkbride, R., Harada, J., and Comai, L. (2009). Dosage-dependent deregulation of an AGAMOUSLIKE gene cluster contributes to interspecific incompatibility. Curr. Biol. 19: 1128-1132.
-
(2009)
Curr. Biol
, vol.19
, pp. 1128-1132
-
-
Walia, H.1
Josefsson, C.2
Dilkes, B.3
Kirkbride, R.4
Harada, J.5
Comai, L.6
-
83
-
-
77955693962
-
The VQ motif protein IKU1 regulates endosperm growth and seed size in Arabidopsis
-
Wang, A., Garcia, D., Zhang, H., Feng, K., Chaudhury, A., Berger, F., Peacock, W.J., Dennis, E.S., and Luo, M. (2010). The VQ motif protein IKU1 regulates endosperm growth and seed size in Arabidopsis. Plant J. 63: 670-679.
-
(2010)
Plant J
, vol.63
, pp. 670-679
-
-
Wang, A.1
Garcia, D.2
Zhang, H.3
Feng, K.4
Chaudhury, A.5
Berger, F.6
Peacock, W.J.7
Dennis, E.S.8
Luo, M.9
-
84
-
-
0035969499
-
Isochorismate synthase is required to synthesize salicylic acid for plant defence
-
Wildermuth, M.C., Dewdney, J., Wu, G., and Ausubel, F.M. (2001). Isochorismate synthase is required to synthesize salicylic acid for plant defence. Nature 414: 562-565.
-
(2001)
Nature
, vol.414
, pp. 562-565
-
-
Wildermuth, M.C.1
Dewdney, J.2
Wu, G.3
Ausubel, F.M.4
-
85
-
-
79959848590
-
High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis endosperm
-
Wolff, P., Weinhofer, I., Seguin, J., Roszak, P., Beisel, C., Donoghue, M.T., Spillane, C., Nordborg, M., Rehmsmeier, M., and Köhler, C. (2011). High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis endosperm. PLoS Genet. 7: e1002126.
-
(2011)
PLoS Genet
, vol.7
-
-
Wolff, P.1
Weinhofer, I.2
Seguin, J.3
Roszak, P.4
Beisel, C.5
Donoghue, M.T.6
Spillane, C.7
Nordborg, M.8
Rehmsmeier, M.9
Köhler, C.10
-
86
-
-
77949889853
-
Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky- Muller incompatibility in rice
-
Yamamoto, E., Takashi, T., Morinaka, Y., Lin, S., Wu, J., Matsumoto, T., Kitano, H., Matsuoka, M., and Ashikari, M. (2010). Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky- Muller incompatibility in rice. Mol. Genet. Genomics 283: 305-315.
-
(2010)
Mol. Genet. Genomics
, vol.283
, pp. 305-315
-
-
Yamamoto, E.1
Takashi, T.2
Morinaka, Y.3
Lin, S.4
Wu, J.5
Matsumoto, T.6
Kitano, H.7
Matsuoka, M.8
Ashikari, M.9
-
87
-
-
1542723291
-
The wheat VRN2 gene is a flowering repressor downregulated by vernalization
-
Yan, L., Loukoianov, A., Blechl, A., Tranquilli, G., Ramakrishna, W., SanMiguel, P., Bennetzen, J.L., Echenique, V., and Dubcovsky, J. (2004). The wheat VRN2 gene is a flowering repressor downregulated by vernalization. Science 303: 1640-1644.
-
(2004)
Science
, vol.303
, pp. 1640-1644
-
-
Yan, L.1
Loukoianov, A.2
Blechl, A.3
Tranquilli, G.4
Ramakrishna, W.5
Sanmiguel, P.6
Bennetzen, J.L.7
Echenique, V.8
Dubcovsky, J.9
-
88
-
-
58149350318
-
The endosperm-specific ZHOUPI gene of Arabidopsis thaliana regulates endosperm breakdown and embryonic epidermal development
-
Yang, S., Johnston, N., Talideh, E., Mitchell, S., Jeffree, C., Goodrich, J., and Ingram, G. (2008). The endosperm-specific ZHOUPI gene of Arabidopsis thaliana regulates endosperm breakdown and embryonic epidermal development. Development 135: 3501-3509.
-
(2008)
Development
, vol.135
, pp. 3501-3509
-
-
Yang, S.1
Johnston, N.2
Talideh, E.3
Mitchell, S.4
Jeffree, C.5
Goodrich, J.6
Ingram, G.7
-
89
-
-
84855714022
-
Roles of target site location and sequence complementarity in trans-acting siRNA formation in Arabidopsis
-
Zhang, C., Ng, D.W., Lu, J., and Chen, Z.J. (2012). Roles of target site location and sequence complementarity in trans-acting siRNA formation in Arabidopsis. Plant J. 69: 217-226.
-
(2012)
Plant J
, vol.69
, pp. 217-226
-
-
Zhang, C.1
Ng, D.W.2
Lu, J.3
Chen, Z.J.4
|