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Volumn 7, Issue 8, 2013, Pages 1531-1543

Biogeography of the uncultured marine picoeukaryote MAST-4: Temperature-driven distribution patterns

Author keywords

ARISA; Biogeography; Fixation index; ITS1; MAST 4; Temperature

Indexed keywords

RIBOSOMAL SPACER DNA; RNA 18S; SEA WATER;

EID: 84880923776     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2013.53     Document Type: Article
Times cited : (34)

References (60)
  • 1
    • 33750969711 scopus 로고    scopus 로고
    • Culture isolation and culture-independent clone libraries reveal new marine Synechococcus ecotypes with distinctive light and N physiologies
    • Ahlgren NA, Rocap G. (2006). Culture isolation and culture-independent clone libraries reveal new marine Synechococcus ecotypes with distinctive light and N physiologies. Appl Environ Microbiol 72: 7193-7204.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 7193-7204
    • Ahlgren, N.A.1    Rocap, G.2
  • 4
    • 0036800884 scopus 로고    scopus 로고
    • Phytoplankton size distribution and growth rates in the Alboran Sea (SW Mediterranean): Short term variability related to mesoscale hydrodynamics
    • Arin L, Moran X, Estrada M. (2002). Phytoplankton size distribution and growth rates in the Alboran Sea (SW Mediterranean): Short term variability related to mesoscale hydrodynamics. J Plankton Res 24: 1019.
    • (2002) J Plankton Res , vol.24 , pp. 1019
    • Arin, L.1    Moran, X.2    Estrada, M.3
  • 6
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt H, Forster P, Röhl A. (1999). Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48.
    • (1999) Mol Biol Evol , vol.16 , pp. 37-48
    • Bandelt, H.1    Forster, P.2    Röhl, A.3
  • 8
    • 0001925746 scopus 로고
    • The great ocean conveyor
    • Broecker WS. (1991). The great ocean conveyor. Oceanography 4: 79-89.
    • (1991) Oceanography , vol.4 , pp. 79-89
    • Broecker, W.S.1
  • 9
    • 28944440027 scopus 로고    scopus 로고
    • Marine bacterial microdiversity as revealed by internal transcribed spacer analysis
    • Brown M, Fuhrman J. (2005). Marine bacterial microdiversity as revealed by internal transcribed spacer analysis. Aquat Microb Ecol 41: 15-23.
    • (2005) Aquat Microb Ecol , vol.41 , pp. 15-23
    • Brown, M.1    Fuhrman, J.2
  • 11
    • 70349328531 scopus 로고    scopus 로고
    • Controls on diatom biogeography in the ocean
    • Cermeño P, Falkowski PG. (2009). Controls on diatom biogeography in the ocean. Science 325: 1539-1541.
    • (2009) Science , vol.325 , pp. 1539-1541
    • Cermeño, P.1    Falkowski, P.G.2
  • 13
    • 57649155508 scopus 로고    scopus 로고
    • Is there a molecular key to the level of biological species in eukaryotes? A DNA guide
    • Coleman AW. (2009). Is there a molecular key to the level of ''biological species'' in eukaryotes? A DNA guide. Mol Phylogenet Evol 50: 197-203.
    • (2009) Mol Phylogenet Evol , vol.50 , pp. 197-203
    • Coleman, A.W.1
  • 14
    • 78651380983 scopus 로고    scopus 로고
    • Coherent patterns in bacterial growth, growth efficiency, and leucine metabolism along a northeastern Pacific inshore-offshore transect
    • del Giorgio PA, Condon R, Bouvier T, Longnecker K, Bouvier C, Sherr E et al. (2011). Coherent patterns in bacterial growth, growth efficiency, and leucine metabolism along a northeastern Pacific inshore-offshore transect. Limnol Oceanogr 56: 1-16.
    • (2011) Limnol Oceanogr , vol.56 , pp. 1-16
    • Del Giorgio, P.A.1    Condon, R.2    Bouvier, T.3    Longnecker, K.4    Bouvier, C.5    Sherr, E.6
  • 15
    • 3843126289 scopus 로고    scopus 로고
    • Distribution of eukaryotic picoplankton assemblages across hydrographic fronts in the Southern Ocean, studied by denaturing gradient gel electrophoresis
    • Díez B, Massana R, Estrada M, Pedrós-Alió C. (2004). Distribution of eukaryotic picoplankton assemblages across hydrographic fronts in the Southern Ocean, studied by denaturing gradient gel electrophoresis. Limnol Oceanogr 49: 1022-1034.
    • (2004) Limnol Oceanogr , vol.49 , pp. 1022-1034
    • Díez, B.1    Massana, R.2    Estrada, M.3    Pedrós-Alió, C.4
  • 16
    • 33645243017 scopus 로고    scopus 로고
    • Microbial biogeography?
    • Dolan J. (2006). Microbial biogeography? J Biogeogr 33: 199-200.
    • (2006) J Biogeogr , vol.33 , pp. 199-200
    • Dolan, J.1
  • 17
    • 4043087606 scopus 로고    scopus 로고
    • The ubiquity of small species: Patterns of local and global diversity
    • Fenchel T, Finlay BJ. (2004). The ubiquity of small species: Patterns of local and global diversity. Bioscience 54: 777-784.
    • (2004) Bioscience , vol.54 , pp. 777-784
    • Fenchel, T.1    Finlay, B.J.2
  • 18
    • 0037052531 scopus 로고    scopus 로고
    • Global dispersal of free-living microbial eukaryote species
    • Finlay BJ. (2002). Global dispersal of free-living microbial eukaryote species. Science 296: 1061-1063.
    • (2002) Science , vol.296 , pp. 1061-1063
    • Finlay, B.J.1
  • 19
    • 33749436421 scopus 로고    scopus 로고
    • Multiple cosmopolitan ecotypes within a microbial eukaryote morphospecies
    • Finlay BJ, Esteban G, Brown S, Fenchel T, Hoef-Emden K. (2006). Multiple cosmopolitan ecotypes within a microbial eukaryote morphospecies. Protist 157: 377-390.
    • (2006) Protist , vol.157 , pp. 377-390
    • Finlay, B.J.1    Esteban, G.2    Brown, S.3    Fenchel, T.4    Hoef-Emden, K.5
  • 20
    • 0032879764 scopus 로고    scopus 로고
    • Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities
    • Fisher MM, Triplett EW. (1999). Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl Environ Microbiol 65: 4630-4636.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4630-4636
    • Fisher, M.M.1    Triplett, E.W.2
  • 21
  • 24
    • 33645862985 scopus 로고    scopus 로고
    • Improved strategy for comparing microbial assemblage fingerprints
    • Hewson I, Fuhrman J. (2006). Improved strategy for comparing microbial assemblage fingerprints. Microb Ecol 51: 147-153.
    • (2006) Microb Ecol , vol.51 , pp. 147-153
    • Hewson, I.1    Fuhrman, J.2
  • 26
    • 44349119087 scopus 로고    scopus 로고
    • Inter- and intraspecific community structure within the diatom genus Pseudo-nitzschia (Bacillariophyceae
    • Hubbard K, Rocap G, Armbrust E. (2008). Inter- and intraspecific community structure within the diatom genus Pseudo-nitzschia (Bacillariophyceae). J Phycol 44: 637-649.
    • (2008) J Phycol , vol.44 , pp. 637-649
    • Hubbard, K.1    Rocap, G.2    Armbrust, E.3
  • 27
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • Katoh K, Toh H. (2008). Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9: 286-298.
    • (2008) Brief Bioinform , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 28
    • 33745815862 scopus 로고    scopus 로고
    • Molecular analysis of complete SSU to LSU rDNA sequence in the harmful dinoflagellate Alexandrium tamarense (korean isolate, HY970328M
    • Ki J, Han M. (2005). Molecular analysis of complete SSU to LSU rDNA sequence in the harmful dinoflagellate Alexandrium tamarense (korean isolate, HY970328M). Ocean Sci J 40: 43-54.
    • (2005) Ocean Sci J , vol.40 , pp. 43-54
    • Ki, J.1    Han, M.2
  • 29
    • 40949157578 scopus 로고    scopus 로고
    • Global diversity and biogeography of Skeletonema species (Bacillariophyta
    • Kooistra WH, Sarno D, Balzano S, Gu H, Andersen RA, Zingone A. (2008). Global diversity and biogeography of Skeletonema species (Bacillariophyta). Protist 159: 177-193.
    • (2008) Protist , vol.159 , pp. 177-193
    • Kooistra, W.H.1    Sarno, D.2    Balzano, S.3    Gu, H.4    Andersen, R.A.5    Zingone, A.6
  • 32
    • 33646583481 scopus 로고    scopus 로고
    • Diversity and distribution of marine microbial eukaryotes in the Arctic Ocean and adjacent seas
    • Lovejoy C, Massana R, Pedrós-Alió C. (2006). Diversity and distribution of marine microbial eukaryotes in the Arctic Ocean and adjacent seas. Appl Environ Microbiol 72: 3085-3095.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3085-3095
    • Lovejoy, C.1    Massana, R.2    Pedrós-Alió, C.3
  • 33
    • 79551711675 scopus 로고    scopus 로고
    • Microbial eukaryotic distribution in a dynamic Beaufort Sea and the Arctic Ocean
    • Lovejoy C, Potvin M. (2011). Microbial eukaryotic distribution in a dynamic Beaufort Sea and the Arctic Ocean. J Plankton Res 3: 431-444.
    • (2011) J Plankton Res , vol.3 , pp. 431-444
    • Lovejoy, C.1    Potvin, M.2
  • 38
    • 0034114417 scopus 로고    scopus 로고
    • A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces
    • Massana R, DeLong EF, Pedrós-Alió C. (2000). A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl Environ Microbiol 66: 1777-1787.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1777-1787
    • Massana, R.1    DeLong, E.F.2    Pedrós-Alió, C.3
  • 39
    • 33746757776 scopus 로고    scopus 로고
    • Distribution and abundance of uncultured heterotrophic flagellates in the world oceans
    • Massana R, Terrado R, Forn I, Lovejoy C, Pedrós-Alió C. (2006). Distribution and abundance of uncultured heterotrophic flagellates in the world oceans. Environ Microbiol 8: 1515-1522.
    • (2006) Environ Microbiol , vol.8 , pp. 1515-1522
    • Massana, R.1    Terrado, R.2    Forn, I.3    Lovejoy, C.4    Pedrós-Alió, C.5
  • 40
    • 36749046801 scopus 로고    scopus 로고
    • If everything is everywhere, do they share a common gene pool?
    • Medlin L. (2007). If everything is everywhere, do they share a common gene pool? Gene 406: 180-183.
    • (2007) Gene , vol.406 , pp. 180-183
    • Medlin, L.1
  • 41
    • 77954557093 scopus 로고    scopus 로고
    • Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity
    • Nolte V, Pandey RV, Jost S, Medinger R, Ottenwälder B, Boenigk J et al. (2010). Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity. Mol Ecol 19: 2908-2915.
    • (2010) Mol Ecol , vol.19 , pp. 2908-2915
    • Nolte, V.1    Pandey, R.V.2    Jost, S.3    Medinger, R.4    Ottenwälder, B.5    Boenigk, J.6
  • 42
    • 53349168564 scopus 로고    scopus 로고
    • Protistan assemblages across the Indian Ocean, with a specific emphasis on the picoeukaryotes
    • Not F, Latasa M, Scharek R, Viprey M, Karleskind P, Balagué V et al. (2008). Protistan assemblages across the Indian Ocean, with a specific emphasis on the picoeukaryotes. Deep-Sea Res I 55: 1456-1473.
    • (2008) Deep-Sea Res I , vol.55 , pp. 1456-1473
    • Not, F.1    Latasa, M.2    Scharek, R.3    Viprey, M.4    Karleskind, P.5    Balagué, V.6
  • 43
    • 25144518564 scopus 로고    scopus 로고
    • Late summer community composition and abundance of photosynthetic picoeukaryotes inNorwegian and Barents Seas
    • Not F, Massana R, Latasa M, Marie D, Colson C, Eikrem W et al. (2005). Late summer community composition and abundance of photosynthetic picoeukaryotes inNorwegian and Barents Seas. Limnol Oceanogr 50: 1677-1686.
    • (2005) Limnol Oceanogr , vol.50 , pp. 1677-1686
    • Not, F.1    Massana, R.2    Latasa, M.3    Marie, D.4    Colson, C.5    Eikrem, W.6
  • 44
    • 50149083715 scopus 로고    scopus 로고
    • Everything is everywhere: But the environment selects' ubiquitous distribution and ecological determinism in microbial biogeography
    • O'Malley MA. (2008). 'Everything is everywhere: But the environment selects': Ubiquitous distribution and ecological determinism in microbial biogeography. Stud His Phil Biol Biomed Sci 39: 314-325.
    • (2008) Stud His Phil Biol Biomed Sci , vol.39 , pp. 314-325
    • O'Malley, M.A.1
  • 45
    • 2542430587 scopus 로고    scopus 로고
    • Multiple rDNA ITS-types within the diatom Pseudo-nitzschia delicatissima (Bacillariophyceae) and their relative abundances across a spring bloom in the Gulf of Naples
    • Orsini L, Procaccini G, Sarno D, Montresor M. (2004). Multiple rDNA ITS-types within the diatom Pseudo-nitzschia delicatissima (Bacillariophyceae) and their relative abundances across a spring bloom in the Gulf of Naples. Mar Ecol Prog Ser 271: 87-98.
    • (2004) Mar Ecol Prog Ser , vol.271 , pp. 87-98
    • Orsini, L.1    Procaccini, G.2    Sarno, D.3    Montresor, M.4
  • 46
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J et al. (2007). SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6
  • 48
    • 64749099600 scopus 로고    scopus 로고
    • Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities
    • Ramette A. (2009). Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities. Appl Environ Microbiol 75: 2495-2505.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2495-2505
    • Ramette, A.1
  • 50
    • 58549120997 scopus 로고    scopus 로고
    • Distribution of the uncultured protist MAST-4 in the Indian Ocean, Drake Passage and Mediterranean Sea assessed by real-time quantitative PCR
    • Rodríguez-Martínez R, Labrenz M, Del Campo J, Forn I, Jürgens K, Massana R. (2009). Distribution of the uncultured protist MAST-4 in the Indian Ocean, Drake Passage and Mediterranean Sea assessed by real-time quantitative PCR. Environ Microbiol 11: 397-408.
    • (2009) Environ Microbiol , vol.11 , pp. 397-408
    • Rodríguez-Martínez, R.1    Labrenz, M.2    Del Campo, J.3    Forn, I.4    Jürgens, K.5    Massana, R.6
  • 51
    • 84862890144 scopus 로고    scopus 로고
    • Low evolutionary diversification in a widespread and abundant uncultured protist MAST-4
    • Rodríguez-Martínez R, Rocap G, Logares R, Romac S, Massana R. (2012). Low evolutionary diversification in a widespread and abundant uncultured protist MAST-4). Mol Biol Evol 29: 1393-1406.
    • (2012) Mol Biol Evol , vol.29 , pp. 1393-1406
    • Rodríguez-Martínez, R.1    Rocap, G.2    Logares, R.3    Romac, S.4    Massana, R.5
  • 52
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Opensource, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB et al. (2009). Introducing mothur: Opensource, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 53
    • 69649103400 scopus 로고    scopus 로고
    • Dispersal and biogeography of marine plankton: Long-distance dispersal of the foraminifer Truncorotalia truncatulinoides
    • Sexton PF, Norris RD. (2008). Dispersal and biogeography of marine plankton: Long-distance dispersal of the foraminifer Truncorotalia truncatulinoides. Geology 36: 899-902.
    • (2008) Geology , vol.36 , pp. 899-902
    • Sexton, P.F.1    Norris, R.D.2
  • 54
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. (2006). RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 57
    • 0042242559 scopus 로고    scopus 로고
    • Geographic barriers isolate endemic populations of hyperthermophilic Archaea
    • Whitaker RJ. (2003). Geographic barriers isolate endemic populations of hyperthermophilic Archaea. Science 301: 976-978.
    • (2003) Science , vol.301 , pp. 976-978
    • Whitaker, R.J.1
  • 58
    • 27744553666 scopus 로고    scopus 로고
    • Biogeography: Is everything everywhere?
    • Whitfield J. (2005). Biogeography: Is everything everywhere? Science 310: 960-961.
    • (2005) Science , vol.310 , pp. 960-961
    • Whitfield, J.1
  • 59
    • 46149089912 scopus 로고    scopus 로고
    • Relationship of geographic distance, depth, temperature, and viruses with prokaryotic communities in the eastern tropical atlantic ocean
    • Winter C, Moeseneder MM, Herndl GJ, Weinbauer MG. (2008). Relationship of geographic distance, depth, temperature, and viruses with prokaryotic communities in the Eastern Tropical Atlantic Ocean. Microb Ecol 56: 383-389.
    • (2008) Microb Ecol , vol.56 , pp. 383-389
    • Winter, C.1    Moeseneder, M.M.2    Herndl, G.J.3    Weinbauer, M.G.4
  • 60
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. (2003). mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406
    • Zuker, M.1


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