AFLP-based genetic mapping of the " bud-flowering" trait in heather (Calluna vulgaris)

BMC Genetics

Volumn 14, Issue , 2013, Pages

  Behrend, Anne ^a   Borchert, Thomas ^a,b   Spiller, Monika ^c   Hohe, Annette ^a  

^a LEIBNIZ INSTITUTE OF VEGETABLE AND ORNAMENTAL CROPS   (Germany)

^b Siemens Healthcare Diagnostics Holding GmbH   (Germany)

^c LEIBNIZ UNIVERSITY HANNOVER   (Germany)

Author keywords

Bud bloomer; Flower architecture; Linkage map; ML mapping; Molecular marker

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BUD; CALLUNA; CALLUNA VULGARIS; CHROMOSOME NUMBER; CONTROLLED STUDY; FLOWER; FLOWERING; GENE LOCUS; GENE MAPPING; GENETIC LINKAGE; GENETIC TRAIT; INHERITANCE; NONHUMAN; SEGREGATION DISTORTION;

ALGORITHMS; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; CALLUNA; FLOWERS; GENETIC LINKAGE; LIKELIHOOD FUNCTIONS;

CALLUNA; CALLUNA VULGARIS;

EID: 84880899955     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-14-64     Document Type: Article

References (40)

1. Ehsen B. Sichtungsergebnisse von Calluna-Knospenblühern, von einer " Laune" der Natur zum Verkaufsschlager. Deutsche Baumschule 2011, 6:15-17.
2. McClintock D. Harmonising botanical and cultivar classification with special reference to hardy heathers. Acta Horticulturae (ISHS) 1986, 182:277-284.
3. Borchert T, Hohe A. Classification of flower types in Calluna vulgaris L. (HULL). Acta Horticulturae (ISHS) 2010, 855:41-46.
4. Borchert T, Eckardt K, Fuchs J, Kruger K, Hohe A. 'Who's who' in two different flower types of Calluna vulgaris (Ericaceae): morphological and molecular analyses of flower organ identity. BMC Plant Biol 2009, 9.
5. Borchert T, Hohe A. Identification of molecular markers for the flower type in the ornamental crop Calluna vulgaris. Euphytica 2009, 170(1-2):203-213.
6. Borchert T, Krueger J, Hohe A. Implementation of a model for identifying essentially derived varieties in vegetatively propagated Calluna vulgaris varieties. BMC Genet 2008, 9.
7. Uhrikova A, Majovsky J. Chromosome number reports LXIX. Taxon 1980, 29:725-726.
8. Fraga MI. Números cromosomáticos de plantas occidentales, 223-233. An Jard Bot Madr 1983, 39:533-539.
9. Uotila P, Pellinen K. Chromosome numbers in vascular plants from Finland. Acta Botanica Fennica 1985, 130:1-37. Finnish Botanical Publishing Board, Helsiki.
10. Borchert T, Gawenda I. Development and application of high-throughput amplified fragment length polymorphism technique in Calluna vulgaris (Ericaceae). Electron J Biotechnol 2010, 13(2).
11. Doligez A, Adam-Blondon AF, Cipriani G, Laucou V, Merdinoglu D, Meredith CP, Riaz S, Roux C, This P, Di Gaspero G. An integrated SSR map of grapevine based on five mapping populations. Theor Appl Genet 2006, 113(3):369-382. 10.1007/s00122-006-0295-1, 16799809.
12. Young WP, Schupp JM, Keim P. DNA methylation and AFLP marker distribution in the soybean genome. Theor Appl Genet 1999, 99(5):785-792.
13. Voorrips RE. MapChart: Software for the graphical presentation of linkage maps and QTLs. J Hered 2002, 93(1):77-78. 10.1093/jhered/93.1.77, 12011185.
14. De Keyser E, Shu Q, Van Bockstaele E, De Riek J. Multipoint-likelihood maximization mapping on 4 segregating populations to achieve an integrated framework map for QTL analysis in pot azalea (Rhododendron simsii hybrids). BMC Mol Biol 2010, 11(1).
15. Van Ooijen JW. JoinMap 4, Software for the calculation of gentic linkage maps in experimental population 2006, Wageningen, Netherlands: Kyazma, Kyazma.
16. Meyerowitz, Weigel. The ABCs of floral homeotic genes. Cell 1994, 79(1):180.
17. Lee DW, Brammeier S, Smith AP. The selective advantages of anthocyanins in developing leaves of mango and cacao. Biotropica 1987, 19(1):40-49.
18. Woodall GS, Stewart GR. Do anthocyanins play a role in UV protection of the red juvenile leaves of Syzygium?. J Exp Bot 1998, 49(325):1447-1450.
19. Han TH, van Eck HJ, De Jeu MJ, Jacobsen E. Mapping of quantitative trait loci involved in ornamental traits in Alstroemeria. Hortscience 2002, 37(3):585-592.
20. Ky CL, Barre P, Lorieux M, Trouslot P, Akaffou S, Louarn J, Charrier A, Hamon S, Noirot M. Interspecific genetic linkage map, segregation distortion and genetic conversion in coffee (Coffea sp.). Theor Appl Genet 2000, 101(4):669-676.
21. Hackett CA, Broadfoot LB. Effects of genotyping errors, missing values and segregation distortion in molecular marker data on the construction of linkage maps. Heredity 2003, 90(1):33-38. 10.1038/sj.hdy.6800173, 12522423.
22. Doucleff M, Jin Y, Gao F, Riaz S, Krivanek AF, Walker MA. A genetic linkage map of grape, utilizing Vitis rupestris and Vitis arizonica. Theor Appl Genet 2004, 109(6):1178-1187. 10.1007/s00122-004-1728-3, 15292989.
23. Yan Z, Denneboom C, Hattendorf A, Dolstra O, Debener T, Stam P, Visser PB. Construction of an integrated map of rose with AFLP, SSR, PK, RGA, RFLP, SCAR and morphological markers. Theor Appl Genet 2005, 110(4):766-777. 10.1007/s00122-004-1903-6, 15672277.
24. Reinisch AJ, Dong J, Brubaker CL, Stelly DM, Wendel JF, Paterson AH. A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: Chromosome organization and evolution in a disomic polyploid genome. Genetics 1994, 138(3):829-847. 1206231, 7851778.
25. Ky CL, Doulbeau S, Guyot B, Akaffou S, Charrier A, Hamon S, Louarn J, Noirot M. Inheritance of coffee bean sucrose content in the interspecific cross Coffea pseudozanguebariae x Coffea liberica 'dewevrei'. Plant Breeding 2000, 119(2):165-168.
26. Cloutier S, Cappadocia M, Landry BS. Analysis of RFLP mapping inaccuracy in Brassica napus L. Theor Appl Genet 1997, 95(1-2):83-91.
27. Vekemans X, Beauwens T, Lemaire M, Roldán-Ruiz I. Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Mol Ecol 2002, 11(1):139-151. 10.1046/j.0962-1083.2001.01415.x, 11903911.
28. Gort G, Koopman WJM, Stein A. Fragment length distributions and collision probabilities for AFLP markers. Biometrics 2006, 62(4):1107-1115. 10.1111/j.1541-0420.2006.00613.x, 17156285.
29. Nikaido A, Yoshimaru H, Tsumura Y, Suyama Y, Murai M, Nagasaka K. Segregation distortion for AFLP markers in Cryptomeria japonica. Genes Genet Syst 1999, 74(2):55-59.
30. Cartwright DA, Troggio M, Velasco R, Gutin A. Genetic mapping in the presence of genotyping errors. Genetics 2007, 176(4):2521-2527. 10.1534/genetics.106.063982, 1950651, 17277374.
31. Maliepaard C, Jansen J, Van Ooijen JW. Linkage analysis in a full-sib family of an outbreeding plant species: overview and consequences for applications. Genet Res 1997, 70(3):237-250.
32. Pelgas B, Bousquet J, Beauseigle S, Isabel N. A composite linkage map from two crosses for the species complex Picea mariana x Picea rubens and analysis of synteny with other Pinaceae. Theor Appl Genet 2005, 111(8):1466-1488. 10.1007/s00122-005-0068-2, 16215729.
33. Van Ooijen JW. Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species. Genet Res 2011, 93(5):343-349.
34. Ferreira A, da Silva MF, Silva L, Cruz CD. Estimating the effects of population size and type on the accuracy of genetic maps. Genet Mol Biol 2006, 29(1):187-192.
35. Grattapaglia D, Sederoff R. Genetic-linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 1994, 137(4):1121-1137. 1206059, 7982566.
36. Berlin S, Lagercrantz U, von Arnold S, Ost T, Ronnberg-Wastljung AC. High-density linkage mapping and evolution of paralogs and orthologs in Salix and Populus. BMC Genomics 2010, 11.
37. Kosambi DD. The estimation of map distance from recombination values. Ann Eugen 1944, 12(3):172-175.
38. Jansen J, de Jong AG, Van Ooijen JW. Constructing dense genetic linkage maps. Theor Appl Genet 2001, 102(6-7):1113-1122.
39. Chakravarti A, Lasher LK, Reefer JE. A maximum likelihood method for estimating genome length using genetic linkage data. Genetics 1991, 128(1):175-182. 1204446, 2060775.
40. Stein J, Pessino SC, Martinez EJ, Rodriguez MP, Siena LA, Quarin CL, Ortiz JPA. A genetic map of tetraploid Paspalum notatum Flügge (bahiagrass) based on single-dose molecular markers. Mol Breed 2007, 20(2):153-166.